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|
CXX=g++
DEBUG?=0
CXXFLAGS?=
LDLIBS?=
ifneq ($(OS), Windows_NT)
UNAME_S := $(shell uname -s)
ifeq ($(UNAME_S), Darwin)
LDFLAGS+=-lpthread
LDLIBS=
else
LDFLAGS+=-pthread
endif
else
LDLIBS=-lrt
endif
SRC=src
SOURCES=$(SRC)/main.cpp $(SRC)/parameter.cpp $(SRC)/matrix.cpp $(SRC)/fastq.cpp
OBJECTS=$(SOURCES:.cpp=.o)
EXECUTABLE=skewer
ifeq ($(DEBUG), 1)
CXXFLAGS += -O0 -g -Wall -D_DEBUG
else
CXXFLAGS += -O2
endif
.PHONY: all debug clean
all:$(EXECUTABLE)
debug:
$(MAKE) $(MAKEFILE) DEBUG=1
$(EXECUTABLE):$(OBJECTS)
$(CXX) $(CXXFLAGS) $(LDFLAGS) $(OBJECTS) -o $@ $(LDLIBS)
.cpp.o:
$(CXX) $(CPPFLAGS) $(CXXFLAGS) -c $< -o $@
$(SRC)/main.o: $(SRC)/parameter.h $(SRC)/matrix.h $(SRC)/fastq.h $(SRC)/common.h
$(SRC)/parameter.o: $(SRC)/parameter.h $(SRC)/fastq.h $(SRC)/common.h
$(SRC)/matrix.o: $(SRC)/matrix.h $(SRC)/common.h
$(SRC)/fastq.o: $(SRC)/fastq.h $(SRC)/common.h
# Clean
clean:
rm -rf $(OBJECTS) $(EXECUTABLE)
# Install
install:
mv -f $(EXECUTABLE) /usr/local/bin
|
