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Source: skewer
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Build-Depends: debhelper-compat (= 13)
Standards-Version: 4.6.0
Homepage: https://github.com/relipmoc/skewer
Rules-Requires-Root: no
Vcs-Browser: https://salsa.debian.org/med-team/skewer
Vcs-Git: https://salsa.debian.org/med-team/skewer.git
Package: skewer
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Description: post-processing of high-throughput DNA sequence reads
skewer implements the bit-masked k-difference matching algorithm
dedicated to the task of adapter trimming and it is specially designed
for processing next-generation sequencing (NGS) paired-end sequences.
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Features
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* Detection and removal of adapter sequences
* Insertion and deletion allowed in pattern matching
* Targeted at Single End, Paired End (PE), and Long Mate Pair (LMP) reads
* Demultiplexing of barcoded sequencing runs
* Multi-threading support
* Trimming based on phred quality scores
* IUPAC characters for barcodes and adapters
* Compressed input and output support
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