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from setuptools import setup, Extension, find_packages
import sys
if ("install" in sys.argv) and sys.version_info < (2, 7, 0):
print "SMALR requires Python 2.7"
sys.exit(-1)
globals = {}
execfile("smalr/__init__.py", globals)
__version__ = globals["__version__"]
__author__ = globals["__author__"]
__email__ = globals["__email__"]
with open('README.rst') as readme_file:
readme = readme_file.read()
requirements = [
'pbcore >= 0.9.4',
'h5py >= 2.0.1',
'numpy >= 1.7.1, < 1.14',
'cython >= 0.17',
]
setup_requirements = [
# TODO(jbeaulaurier): put setup requirements (distutils extensions, etc.) here
"nose",
]
setup(
name = 'smalr',
version=__version__,
author=__author__,
author_email=__email__,
description='A pipeline for single molecule-level modification analysis of SMRT reads',
long_description=readme,
url='https://github.com/jbeaulaurier/SMALR',
packages=find_packages(include=['smalr']),
include_package_data=True,
package_data= {'smalr': ['R/*.r']},
zip_safe= False,
keywords='smalr methylation single-molecule bacteria SMRT pacbio',
entry_points={"console_scripts" : ["smalr = smalr.smalr_multicontig:main"]},
install_requires=requirements,
classifiers=[
'Development Status :: 5 - Production/Stable',
'Intended Audience :: Developers',
'License :: OSI Approved :: BSD License',
'Natural Language :: English',
'Programming Language :: Python :: 2',
'Programming Language :: Python :: 2.7',
],
)
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