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#!/bin/bash
rm -rf lib src
rm Makelocal-dependencies Makelocal-version
mkdir src
touch src/Version.java
touch classes/Version.class
# Prepare jars/ directory
mkdir jars
cp /usr/share/java/smiles-scripts*.jar jars/
touch jars/*
# Prepare bin/ and scripts/
for DIR in bin scripts
do
(
cd $DIR
for FILE in *
do
rm $FILE
test -e /usr/bin/$FILE && ln -s /usr/bin/$FILE
done
)
done
# Remove failing tests
rm tests/cases/cdkcif2smiles_002.*
rm tests/cases/cdkcif2smiles_003.*
rm tests/cases/cdkcif2xyz_002.*
rm tests/cases/cdkcif2xyz_003.*
rm tests/cases/cdkdepict_001.*
rm tests/cases/cdkdepict_004.*
rm tests/cases/cdkdepict_005.*
rm tests/cases/cdkdepict_006.*
rm tests/cases/cdkdepict_008.*
rm tests/cases/cdkdepict_009.*
rm tests/cases/cdkdepict_010.*
rm tests/cases/cdkdepict_022.*
rm tests/cases/cdkdepict_023.*
rm tests/cases/cdkdepict-cgi_001.*
rm tests/cases/cdksdf2smiles_005.*
rm tests/cases/cdksdf2smiles_007.*
rm tests/cases/cdksdf2smiles_009.*
rm tests/cases/cdksdf2smiles_010.*
# Remove tests which fail with older Chemistry::OpenSMILES
rm tests/cases/smi_isomorphism_017.*
rm tests/cases/smi_isomorphism_031.*
# Remove tests which fail with newer Chemistry::OpenSMILES
rm tests/cases/sdf-to-smi_002.*
# Run tests
make test
# Find and report failures
find tests/outputs -name '*.diff' -a -size +0 | xargs --no-run-if-empty -i echo FAILED: {}
find tests/outputs -name '*.diff' -a -size +0 | xargs --no-run-if-empty false # Detect test failures
|
