1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327
|
# --*- Makefile -*--
# Run tests in a test directory (tests/ by default) and report if
# all tests pass.
# USAGE:
# make clean
# make distclean
# make tests
# make
#------------------------------------------------------------------------------
# Include local configuration files from this directory:
MAKECONF_FILES = ${filter-out %~, ${wildcard Makeconf*}}
ifneq ("${MAKECONF_FILES}","")
include ${MAKECONF_FILES}
endif
#------------------------------------------------------------------------------
JFLAGS =
SRC_DIR = src
CLS_DIR = classes
SRC_FILES = ${wildcard ${SRC_DIR}/*.java}
PKG_FILES = $(shell find ${SRC_DIR}/net -name '*.java')
JFILES = ${PKG_FILES} ${SRC_FILES}
CLSFILES = ${JFILES:${SRC_DIR}/%.java=${CLS_DIR}/%.class}
MANIFEST = MANIFEST.txt
JARFILE = jars/smiles-scripts-${VERSION}.jar
JARLINK = jars/smiles-scripts.jar
TARGET = ${JARFILE}
MAIN_JFILES = ${wildcard ${SRC_DIR}/[a-z]*.java}
MAIN_CLASSES = ${MAIN_JFILES:${SRC_DIR}/%.java=${CLS_DIR}/%.class}
# From https://stackoverflow.com/questions/2372056/how-to-turn-off-logging-from-slf4j:
# if needed, 'nop' loads slf4j-nop.jar which is a no-operation logger
SLF4J_LOGGER = simple
JUNIT_DIR = tests/junit
JUNIT_SRC_DIR = ${JUNIT_DIR}/src
JUNIT_CLS_DIR = ${JUNIT_DIR}/classes
JUNIT_FILES := $(shell find ${JUNIT_DIR} -name '*.java')
JUNIT_CLASSES = ${JUNIT_FILES:${JUNIT_SRC_DIR}/%.java=${JUNIT_CLS_DIR}/%.class}
CLASSPATH := ${JARFILE}${CLASSPATH}
export CLASSPATH
JUNIT_CLASSPATH = ${CLASSPATH}:/usr/share/java/junit4.jar
PATH := bin:scripts:${PATH}
export PATH
PERL5LIB := $(shell pwd)/lib/perl5:${PERL5LIB}
export PERL5LIB
#------------------------------------------------------------------------------
COMPILED = ${JARFILE} \
${PM_TO_BLIB_FILES} \
${BUILD_FILES}
#------------------------------------------------------------------------------
BIN_DIR = .
TEST_DIR = tests/cases
OUTP_DIR = tests/outputs
INP_FILES = ${wildcard ${TEST_DIR}/*.inp}
OPT_FILES = ${wildcard ${TEST_DIR}/*.opt}
SH_FILES = ${wildcard ${TEST_DIR}/*.sh}
INP_DIFFS = ${INP_FILES:${TEST_DIR}/%.inp=${OUTP_DIR}/%.diff}
INP_OUTS = ${INP_FILES:${TEST_DIR}/%.inp=${OUTP_DIR}/%.out}
OPT_DIFFS = ${OPT_FILES:${TEST_DIR}/%.opt=${OUTP_DIR}/%.diff}
OPT_OUTS = ${OPT_FILES:${TEST_DIR}/%.opt=${OUTP_DIR}/%.out}
SH_DIFFS = ${SH_FILES:${TEST_DIR}/%.sh=${OUTP_DIR}/%.diff}
SH_OUTS = ${SH_FILES:${TEST_DIR}/%.sh=${OUTP_DIR}/%.out}
DIFF_FILES = $(sort ${INP_DIFFS} ${OPT_DIFFS} ${SH_DIFFS})
OUTP_FILES = $(sort ${INP_OUTS} ${OPT_OUTS} ${SH_OUTS})
.PHONY: all clean cleanAll distclean check test tests out outputs
all: ${COMPILED}
#------------------------------------------------------------------------------
# Include Makefiles with additional rules for this directory:
MAKELOCAL_FILES = ${filter-out %~, ${wildcard Makelocal*}}
ifneq ("${MAKELOCAL_FILES}","")
include ${MAKELOCAL_FILES}
endif
#------------------------------------------------------------------------------
${SRC_FILES:%.java=%.class}: ${PKG_FILES:%.java=%.class}
${JUNIT_CLS_DIR}/%.class: ${JUNIT_SRC_DIR}/%.java
javac ${JFLAGS} -cp ${JUNIT_CLASSPATH} -d ${JUNIT_CLS_DIR} $<
${CLS_DIR}/%.class: ${SRC_DIR}/%.java
javac ${JFLAGS} -cp ${CLS_DIR}:${CLASSPATH}:$$(grep '^ ' MANIFEST.txt | xargs | tr ' ' :) -d ${CLS_DIR} $<
${JARFILE}: ${MANIFEST} ${CLSFILES}
jar cfm $@ ${MANIFEST} -C ${CLS_DIR} .
ln -sf $(@F) ${JARLINK}
SMILES = --smiles c1ccccc1
.PHONY: echo display
echo display:
@echo ${COMPILED}
@echo ${JUNIT_FILES}
@echo ${JUNIT_CLASSES}
run: ${MAIN_CLASSES}
for FILE in $^; do ( \
CLASS=$$(basename $$FILE .class); \
set -x; \
java $${CLASS} ${SMILES} \
) done
#------------------------------------------------------------------------------
${MANIFEST}:
echo 'Manifest-Version: 1.0\r' > $@
echo 'Created-By: 1.8.0_151 (Oracle Corporation)\r' >> $@
echo 'Class-Path: \r' >> $@
find /usr/share/java -name 'cdk-*.jar' | grep -P 'cdk-[^-]+\.jar' | sort | xargs -i echo -e ' '{}' \r' >> $@
find /usr/share/java -name 'freehep-graphicsio-*.jar' | grep -P 'freehep-graphicsio-[^-0-9]+\.jar' | sort | xargs -i echo -e ' '{}' \r' >> $@
echo ' /usr/share/java/beam-core.jar \r' >> $@
echo ' /usr/share/java/soptions.jar \r' >> $@
echo ' /usr/share/java/freehep-graphics2d.jar \r' >> $@
echo ' /usr/share/java/freehep-graphicsbase.jar \r' >> $@
echo ' /usr/share/java/freehep-graphicsio.jar \r' >> $@
echo ' /usr/share/java/guava.jar \r' >> $@
echo ' /usr/share/java/jna.jar \r' >> $@
echo ' /usr/share/java/jna-inchi-api.jar \r' >> $@
echo ' /usr/share/java/log4j-1.2.jar \r' >> $@
echo ' /usr/share/java/slf4j-api.jar \r' >> $@
echo ' /usr/share/java/slf4j-$(SLF4J_LOGGER).jar \r' >> $@
echo ' /usr/share/java/soptions.jar \r' >> $@
echo ' /usr/share/java/vecmath.jar \r' >> $@
#------------------------------------------------------------------------------
DEPEND = .depend
include ${DEPEND}
${DEPEND}: ${JFILES} src/Version.java
mkjavadepend ${SRC_DIR} ${CLS_DIR} > $@
#------------------------------------------------------------------------------
check test tests: ${DIFF_FILES}
out outputs: ${OUTP_FILES}
#------------------------------------------------------------------------------
define filter_output
perl -lpe 's,at [-+\.\/\w\d]+ line \d+\.?,at <script_name> line <line_no>.,'
endef
#------------------------------------------------------------------------------
# Rules to run script-specific tests:
${OUTP_DIR}/%.diff: ${TEST_DIR}/%.inp ${TEST_DIR}/%.opt ${OUTP_DIR}/%.out ${COMPILED}
-@printf "%-50s " "$<:" ; \
if [ ! -e ${TEST_DIR}/$*.chk ] || ${TEST_DIR}/$*.chk; then \
test -f $(dir $<)/$*.env && . $(dir $<)/$*.env; \
$(shell echo $* | sed -e 's/_[0-9]*$$//') \
$(shell grep -v '^#' ${word 2, $^}) \
$< 2>&1 \
| ${filter_output} \
| diff ${OUTP_DIR}/$*.out - > $@ ; \
if [ $$? = 0 ]; then echo "OK"; else echo "FAILED:"; cat $@; fi; \
else \
touch $@; \
fi
${OUTP_DIR}/%.diff: ${TEST_DIR}/%.inp ${OUTP_DIR}/%.out ${COMPILED}
-@printf "%-50s " "$<:" ; \
if [ ! -e ${TEST_DIR}/$*.chk ] || ${TEST_DIR}/$*.chk; then \
test -f $(dir $<)/$*.env && . $(dir $<)/$*.env; \
$(shell echo $* | sed -e 's/_[0-9]*$$//') \
$< 2>&1 \
| ${filter_output} \
| diff ${OUTP_DIR}/$*.out - > $@ ; \
if [ $$? = 0 ]; then echo "OK"; else echo "FAILED:"; cat $@; fi; \
else \
touch $@; \
fi
${OUTP_DIR}/%.diff: ${TEST_DIR}/%.opt ${OUTP_DIR}/%.out ${COMPILED}
-@printf "%-50s " "$<:" ; \
if [ ! -e ${TEST_DIR}/$*.chk ] || ${TEST_DIR}/$*.chk; then \
test -f $(dir $<)/$*.env && . $(dir $<)/$*.env; \
$(shell echo $* | sed -e 's/_[0-9]*$$//') \
$(shell grep -v '^#' $<) \
2>&1 \
| ${filter_output} \
| diff ${OUTP_DIR}/$*.out - > $@ ; \
if [ $$? = 0 ]; then echo "OK"; else echo "FAILED:"; cat $@; fi; \
else \
touch $@; \
fi
${OUTP_DIR}/%.diff: ${TEST_DIR}/%.sh ${OUTP_DIR}/%.out ${COMPILED}
-@printf "%-50s " "$<:" ; \
if [ ! -e ${TEST_DIR}/$*.chk ] || ${TEST_DIR}/$*.chk; then \
test -f $(dir $<)/$*.env && . $(dir $<)/$*.env; \
$< 2>&1 \
| ${filter_output} \
| diff ${OUTP_DIR}/$*.out - > $@ ; \
if [ $$? = 0 ]; then echo "OK"; else echo "FAILED:"; cat $@; fi; \
else \
touch $@; \
fi
# Rules to generate sample test outputs:
${OUTP_DIR}/%.out: ${TEST_DIR}/%.inp ${TEST_DIR}/%.opt ${COMPILED}
-@test -f $@ || echo "$@:"
-@test -f $(dir $<)/$*.env && . $(dir $<)/$*.env; \
test -f $@ || \
$(shell echo $* | sed -e 's/_[0-9]*$$//') \
$(shell grep -v '^#' ${word 2, $^}) \
$< \
2>&1 \
| ${filter_output} \
| tee $@
-@touch $@
${OUTP_DIR}/%.out: ${TEST_DIR}/%.inp ${COMPILED}
-@test -f $@ || echo "$@:"
-@test -f $(dir $<)/$*.env && . $(dir $<)/$*.env; \
test -f $@ || \
$(shell echo $* | sed -e 's/_[0-9]*$$//') \
$< \
2>&1 \
| ${filter_output} \
| tee $@
-@touch $@
${OUTP_DIR}/%.out: ${TEST_DIR}/%.opt ${COMPILED}
-@test -f $@ || echo "$@:"
-@test -f $(dir $<)/$*.env && . $(dir $<)/$*.env; \
test -f $@ || \
$(shell echo $* | sed -e 's/_[0-9]*$$//') \
$(shell grep -v '^#' $<) \
2>&1 \
| ${filter_output} \
| tee $@
-@touch $@
${OUTP_DIR}/%.out: ${TEST_DIR}/%.sh ${COMPILED}
-@test -f $@ || echo "$@:"
-@test -f $(dir $<)/$*.env && . $(dir $<)/$*.env; \
test -f $@ || \
$< 2>&1 \
| ${filter_output} \
| tee $@
-@touch $@
#------------------------------------------------------------------------------
# Rules to run JUnit tests:
tests: junit-tests
.PHONY: junit-tests
JUNIT_LOG_DIR = ${OUTP_DIR}/junit
JUNIT_LOGS = ${JUNIT_CLASSES:${JUNIT_CLS_DIR}/%.class=${JUNIT_LOG_DIR}/%.log}
junit-tests: ${JUNIT_LOGS}
.PRECIOUS: ${JUNIT_CLS_DIR}/%.class
${JUNIT_LOG_DIR}/%.log: ${JUNIT_CLS_DIR}/%.class
@mkdir -p $(dir $@)
@CLASS=$$(echo $< | sed 's:^tests/junit/classes/::; s/\.class$$//; s:/:.:g'); \
echo -n $$CLASS":\t"; \
java -cp ${JUNIT_CLASSPATH}:${JUNIT_CLS_DIR} org.junit.runner.JUnitCore $${CLASS} \
> $@ 2>&1; \
if [ $$? -eq 0 ]; then echo "OK"; else echo "FAILED:"; cat $@; fi
#------------------------------------------------------------------------------
.PHONY: listdiff
listdiff:
@-( \
test -d "${OUTP_DIR}" && \
find "${OUTP_DIR}" -name '*.diff' -size +0 \
) | sort -u
#------------------------------------------------------------------------------
clean:
rm -f ${DIFF_FILES}
rm -f ${JUNIT_LOGS}
cleanAll distclean: clean
rm -f ${CLSFILES}
rm -f ${MANIFEST}
rm -f ${JARFILE} ${JARLINK}
rm -f ${JUNIT_CLASSES}
rm -f .depend
rm -rf ${JUNIT_CLS_DIR}/* ${CLS_DIR}/* ${JUNIT_LOG_DIR}/*
|