 |
|
|
|
.. (parent) |
 |
d |
rwxr-xr-x |
78 |
knapsack
|
 |
d |
rwxr-xr-x |
4,096 |
linting
|
 |
d |
rwxr-xr-x |
30 |
profile
|
 |
d |
rwxr-xr-x |
33 |
resources
|
 |
d |
rwxr-xr-x |
75 |
test (with parenthese's)
|
 |
d |
rwxr-xr-x |
75 |
test01
|
 |
d |
rwxr-xr-x |
75 |
test02
|
 |
d |
rwxr-xr-x |
92 |
test03
|
 |
d |
rwxr-xr-x |
92 |
test04
|
 |
d |
rwxr-xr-x |
75 |
test05
|
 |
d |
rwxr-xr-x |
75 |
test06
|
 |
d |
rwxr-xr-x |
75 |
test07
|
 |
d |
rwxr-xr-x |
94 |
test08
|
 |
d |
rwxr-xr-x |
75 |
test09
|
 |
d |
rwxr-xr-x |
75 |
test10
|
 |
d |
rwxr-xr-x |
102 |
test11
|
 |
d |
rwxr-xr-x |
75 |
test12
|
 |
d |
rwxr-xr-x |
75 |
test13
|
 |
d |
rwxr-xr-x |
4,096 |
test14
|
 |
d |
rwxr-xr-x |
75 |
test15
|
 |
d |
rwxr-xr-x |
44 |
testHighWorkload
|
 |
d |
rwxr-xr-x |
57 |
test_all_temp
|
 |
d |
rwxr-xr-x |
57 |
test_ancient
|
 |
d |
rwxr-xr-x |
57 |
test_ancient_dag
|
 |
d |
rwxr-xr-x |
81 |
test_archive
|
 |
d |
rwxr-xr-x |
57 |
test_azure_batch
|
 |
d |
rwxr-xr-x |
57 |
test_bash
|
 |
d |
rwxr-xr-x |
57 |
test_batch
|
 |
d |
rwxr-xr-x |
57 |
test_batch_final
|
 |
d |
rwxr-xr-x |
77 |
test_benchmark
|
 |
d |
rwxr-xr-x |
57 |
test_cache_multioutput
|
 |
d |
rwxr-xr-x |
72 |
test_checkpoint_allowed_rules
|
 |
d |
rwxr-xr-x |
75 |
test_checkpoints
|
 |
d |
rwxr-xr-x |
75 |
test_checkpoints_dir
|
 |
d |
rwxr-xr-x |
97 |
test_cloud_checkpoints_issue574
|
 |
d |
rwxr-xr-x |
145 |
test_cluster_cancelscript
|
 |
d |
rwxr-xr-x |
113 |
test_cluster_sidecar
|
 |
d |
rwxr-xr-x |
122 |
test_cluster_statusscript
|
 |
d |
rwxr-xr-x |
106 |
test_cluster_statusscript_multi
|
 |
d |
rwxr-xr-x |
81 |
test_conda
|
 |
d |
rwxr-xr-x |
81 |
test_conda_cmd_exe
|
 |
d |
rwxr-xr-x |
81 |
test_conda_custom_prefix
|
 |
d |
rwxr-xr-x |
57 |
test_conda_function
|
 |
d |
rwxr-xr-x |
57 |
test_conda_named
|
 |
d |
rwxr-xr-x |
117 |
test_conda_pin_file
|
 |
d |
rwxr-xr-x |
113 |
test_conda_python_3_7_script
|
 |
d |
rwxr-xr-x |
113 |
test_conda_python_script
|
 |
d |
rwxr-xr-x |
57 |
test_conditional
|
 |
d |
rwxr-xr-x |
140 |
test_config
|
 |
d |
rwxr-xr-x |
155 |
test_config_merging
|
 |
d |
rwxr-xr-x |
79 |
test_config_yte
|
 |
d |
rwxr-xr-x |
76 |
test_container
|
 |
d |
rwxr-xr-x |
97 |
test_containerized
|
 |
d |
rwxr-xr-x |
48 |
test_convert_to_cwl
|
 |
d |
rwxr-xr-x |
102 |
test_converting_path_for_r_script
|
 |
d |
rwxr-xr-x |
57 |
test_core_dependent_threads
|
 |
d |
rwxr-xr-x |
76 |
test_cwl
|
 |
d |
rwxr-xr-x |
76 |
test_default_remote
|
 |
d |
rwxr-xr-x |
76 |
test_default_resources
|
 |
d |
rwxr-xr-x |
57 |
test_default_target
|
 |
d |
rwxr-xr-x |
95 |
test_deferred_func_eval
|
 |
d |
rwxr-xr-x |
100 |
test_delete_all_output
|
 |
d |
rwxr-xr-x |
78 |
test_delete_output
|
 |
d |
rwxr-xr-x |
118 |
test_deploy_hashing
|
 |
d |
rwxr-xr-x |
115 |
test_deploy_script
|
 |
d |
rwxr-xr-x |
77 |
test_directory
|
 |
d |
rwxr-xr-x |
57 |
test_dup_out_patterns
|
 |
d |
rwxr-xr-x |
78 |
test_dynamic
|
 |
d |
rwxr-xr-x |
97 |
test_dynamic_temp
|
 |
d |
rwxr-xr-x |
81 |
test_empty_include
|
 |
d |
rwxr-xr-x |
57 |
test_ensure
|
 |
d |
rwxr-xr-x |
87 |
test_env_modules
|
 |
d |
rwxr-xr-x |
57 |
test_envvars
|
 |
d |
rwxr-xr-x |
57 |
test_expand_flag
|
 |
d |
rwxr-xr-x |
48 |
test_filegraph
|
 |
d |
rwxr-xr-x |
77 |
test_filesep_windows
|
 |
d |
rwxr-xr-x |
57 |
test_format_params
|
 |
d |
rwxr-xr-x |
57 |
test_format_wildcards
|
 |
d |
rwxr-xr-x |
57 |
test_fstring
|
 |
d |
rwxr-xr-x |
57 |
test_ftp_immediate_close
|
 |
d |
rwxr-xr-x |
72 |
test_generate_unit_tests
|
 |
d |
rwxr-xr-x |
123 |
test_get_log_both
|
 |
d |
rwxr-xr-x |
123 |
test_get_log_complex
|
 |
d |
rwxr-xr-x |
123 |
test_get_log_none
|
 |
d |
rwxr-xr-x |
123 |
test_get_log_stderr
|
 |
d |
rwxr-xr-x |
123 |
test_get_log_stdout
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue105
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue1062
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue1069
|
 |
d |
rwxr-xr-x |
75 |
test_github_issue1158
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue1261
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue1384
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue1389
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue1396
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue1460
|
 |
d |
rwxr-xr-x |
30 |
test_github_issue1469
|
 |
d |
rwxr-xr-x |
78 |
test_github_issue1498
|
 |
d |
rwxr-xr-x |
96 |
test_github_issue1500
|
 |
d |
rwxr-xr-x |
73 |
test_github_issue1542
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue1550
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue1618
|
 |
d |
rwxr-xr-x |
4,096 |
test_github_issue1818
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue1882
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue2142
|
 |
d |
rwxr-xr-x |
48 |
test_github_issue2154
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue261
|
 |
d |
rwxr-xr-x |
76 |
test_github_issue413
|
 |
d |
rwxr-xr-x |
78 |
test_github_issue456
|
 |
d |
rwxr-xr-x |
89 |
test_github_issue52
|
 |
d |
rwxr-xr-x |
4,096 |
test_github_issue627
|
 |
d |
rwxr-xr-x |
76 |
test_github_issue640
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue727
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue78
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue806
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue929
|
 |
d |
rwxr-xr-x |
57 |
test_github_issue988
|
 |
d |
rwxr-xr-x |
107 |
test_github_issue_14
|
 |
d |
rwxr-xr-x |
120 |
test_globwildcards
|
 |
d |
rwxr-xr-x |
97 |
test_google_lifesciences
|
 |
d |
rwxr-xr-x |
72 |
test_group_job_fail
|
 |
d |
rwxr-xr-x |
72 |
test_group_jobs
|
 |
d |
rwxr-xr-x |
72 |
test_group_jobs_attempts
|
 |
d |
rwxr-xr-x |
96 |
test_group_jobs_resources
|
 |
d |
rwxr-xr-x |
57 |
test_group_parallel
|
 |
d |
rwxr-xr-x |
72 |
test_group_with_pipe
|
 |
d |
rwxr-xr-x |
57 |
test_groupid_expand
|
 |
d |
rwxr-xr-x |
72 |
test_groupid_expand_cluster
|
 |
d |
rwxr-xr-x |
57 |
test_gs_requester_pays
|
 |
d |
rwxr-xr-x |
77 |
test_handover
|
 |
d |
rwxr-xr-x |
93 |
test_immediate_submit
|
 |
d |
rwxr-xr-x |
57 |
test_incomplete_params
|
 |
d |
rwxr-xr-x |
57 |
test_inferred_resources
|
 |
d |
rwxr-xr-x |
94 |
test_inoutput_is_path
|
 |
d |
rwxr-xr-x |
114 |
test_input_generator
|
 |
d |
rwxr-xr-x |
94 |
test_issue1037
|
 |
d |
rwxr-xr-x |
57 |
test_issue1041
|
 |
d |
rwxr-xr-x |
97 |
test_issue1046
|
 |
d |
rwxr-xr-x |
75 |
test_issue1083
|
 |
d |
rwxr-xr-x |
57 |
test_issue1085
|
 |
d |
rwxr-xr-x |
57 |
test_issue1092
|
 |
d |
rwxr-xr-x |
81 |
test_issue1093
|
 |
d |
rwxr-xr-x |
57 |
test_issue1281
|
 |
d |
rwxr-xr-x |
57 |
test_issue1284
|
 |
d |
rwxr-xr-x |
57 |
test_issue1331
|
 |
d |
rwxr-xr-x |
57 |
test_issue260
|
 |
d |
rwxr-xr-x |
74 |
test_issue328
|
 |
d |
rwxr-xr-x |
72 |
test_issue381
|
 |
d |
rwxr-xr-x |
57 |
test_issue471
|
 |
d |
rwxr-xr-x |
57 |
test_issue584
|
 |
d |
rwxr-xr-x |
57 |
test_issue612
|
 |
d |
rwxr-xr-x |
110 |
test_issue635
|
 |
d |
rwxr-xr-x |
57 |
test_issue805
|
 |
d |
rwxr-xr-x |
57 |
test_issue823_1
|
 |
d |
rwxr-xr-x |
57 |
test_issue823_2
|
 |
d |
rwxr-xr-x |
57 |
test_issue823_3
|
 |
d |
rwxr-xr-x |
72 |
test_issue850
|
 |
d |
rwxr-xr-x |
57 |
test_issue854
|
 |
d |
rwxr-xr-x |
72 |
test_issue860
|
 |
d |
rwxr-xr-x |
57 |
test_issue894
|
 |
d |
rwxr-xr-x |
87 |
test_issue912
|
 |
d |
rwxr-xr-x |
107 |
test_issue916
|
 |
d |
rwxr-xr-x |
72 |
test_issue930
|
 |
d |
rwxr-xr-x |
57 |
test_issue956
|
 |
d |
rwxr-xr-x |
73 |
test_issue958
|
 |
d |
rwxr-xr-x |
75 |
test_job_properties
|
 |
d |
rwxr-xr-x |
101 |
test_jupyter_notebook
|
 |
d |
rwxr-xr-x |
95 |
test_jupyter_notebook_draft
|
 |
d |
rwxr-xr-x |
95 |
test_keyword_list
|
 |
d |
rwxr-xr-x |
92 |
test_kubernetes
|
 |
d |
rwxr-xr-x |
57 |
test_lazy_resources
|
 |
d |
rwxr-xr-x |
83 |
test_list_untracked
|
 |
d |
rwxr-xr-x |
88 |
test_local_import
|
 |
d |
rwxr-xr-x |
57 |
test_localrule
|
 |
d |
rwxr-xr-x |
57 |
test_log_input
|
 |
d |
rwxr-xr-x |
75 |
test_long_shell
|
 |
d |
rwxr-xr-x |
30 |
test_many_jobs
|
 |
d |
rwxr-xr-x |
57 |
test_match_by_wildcard_names
|
 |
d |
rwxr-xr-x |
51 |
test_metadata_migration
|
 |
d |
rwxr-xr-x |
4,096 |
test_module_complex
|
 |
d |
rwxr-xr-x |
4,096 |
test_module_complex2
|
 |
d |
rwxr-xr-x |
75 |
test_module_input_func
|
 |
d |
rwxr-xr-x |
4,096 |
test_module_local_git
|
 |
d |
rwxr-xr-x |
112 |
test_module_nested
|
 |
d |
rwxr-xr-x |
93 |
test_module_no_prefixing_modified_paths
|
 |
d |
rwxr-xr-x |
4,096 |
test_module_report
|
 |
d |
rwxr-xr-x |
78 |
test_module_wildcard_constraints
|
 |
d |
rwxr-xr-x |
79 |
test_module_with_script
|
 |
d |
rwxr-xr-x |
96 |
test_module_workflow_snakefile_usage
|
 |
d |
rwxr-xr-x |
96 |
test_modules_all
|
 |
d |
rwxr-xr-x |
124 |
test_modules_all_exclude
|
 |
d |
rwxr-xr-x |
125 |
test_modules_meta_wrapper
|
 |
d |
rwxr-xr-x |
110 |
test_modules_peppy
|
 |
d |
rwxr-xr-x |
96 |
test_modules_prefix
|
 |
d |
rwxr-xr-x |
92 |
test_modules_ruledeps_inheritance
|
 |
d |
rwxr-xr-x |
79 |
test_modules_specific
|
 |
d |
rwxr-xr-x |
72 |
test_multicomp_group_jobs
|
 |
d |
rwxr-xr-x |
57 |
test_multiext
|
 |
d |
rwxr-xr-x |
142 |
test_multiple_includes
|
 |
d |
rwxr-xr-x |
57 |
test_name_override
|
 |
d |
rwxr-xr-x |
88 |
test_no_workflow_profile
|
 |
d |
rwxr-xr-x |
57 |
test_nonstr_params
|
 |
d |
rwxr-xr-x |
57 |
test_omitfrom
|
 |
d |
rwxr-xr-x |
73 |
test_output_file_cache
|
 |
d |
rwxr-xr-x |
76 |
test_output_file_cache_remote
|
 |
d |
rwxr-xr-x |
57 |
test_params
|
 |
d |
rwxr-xr-x |
96 |
test_paramspace
|
 |
d |
rwxr-xr-x |
96 |
test_paramspace_single_wildcard
|
 |
d |
rwxr-xr-x |
76 |
test_parser
|
 |
d |
rwxr-xr-x |
57 |
test_parsing_terminal_comment_following_statement
|
 |
d |
rwxr-xr-x |
85 |
test_pathlib
|
 |
d |
rwxr-xr-x |
57 |
test_pathlib_missing_file
|
 |
d |
rwxr-xr-x |
90 |
test_peppy
|
 |
d |
rwxr-xr-x |
57 |
test_persistent_dict
|
 |
d |
rwxr-xr-x |
57 |
test_pipe_depend
|
 |
d |
rwxr-xr-x |
57 |
test_pipes
|
 |
d |
rwxr-xr-x |
57 |
test_pipes2
|
 |
d |
rwxr-xr-x |
57 |
test_pipes_fail
|
 |
d |
rwxr-xr-x |
57 |
test_pipes_multiple
|
 |
d |
rwxr-xr-x |
118 |
test_prebuilt_conda_script
|
 |
d |
rwxr-xr-x |
139 |
test_profile
|
 |
d |
rwxr-xr-x |
57 |
test_protected_symlink_output
|
 |
d |
rwxr-xr-x |
77 |
test_r_wrapper
|
 |
d |
rwxr-xr-x |
76 |
test_remote
|
 |
d |
rwxr-xr-x |
57 |
test_remote_auto
|
 |
d |
rwxr-xr-x |
50 |
test_remote_azure
|
 |
d |
rwxr-xr-x |
84 |
test_remote_gs
|
 |
d |
rwxr-xr-x |
57 |
test_remote_http
|
 |
d |
rwxr-xr-x |
4,096 |
test_remote_irods
|
 |
d |
rwxr-xr-x |
76 |
test_remote_log
|
 |
d |
rwxr-xr-x |
57 |
test_remote_ncbi
|
 |
d |
rwxr-xr-x |
57 |
test_remote_ncbi_simple
|
 |
d |
rwxr-xr-x |
57 |
test_remote_sftp
|
 |
d |
rwxr-xr-x |
76 |
test_remote_zenodo
|
 |
d |
rwxr-xr-x |
4,096 |
test_report
|
 |
d |
rwxr-xr-x |
118 |
test_report_dir
|
 |
d |
rwxr-xr-x |
75 |
test_report_display_code
|
 |
d |
rwxr-xr-x |
4,096 |
test_report_zip
|
 |
d |
rwxr-xr-x |
90 |
test_restartable_job_cmd_exit_1
|
 |
d |
rwxr-xr-x |
109 |
test_restartable_job_qsub_exit_1
|
 |
d |
rwxr-xr-x |
57 |
test_retries
|
 |
d |
rwxr-xr-x |
57 |
test_retries_not_overriden
|
 |
d |
rwxr-xr-x |
84 |
test_rule_defined_in_for_loop
|
 |
d |
rwxr-xr-x |
118 |
test_rule_inheritance_globals
|
 |
d |
rwxr-xr-x |
100 |
test_ruledag
|
 |
d |
rwxr-xr-x |
57 |
test_ruledeps
|
 |
d |
rwxr-xr-x |
57 |
test_run_namedlist
|
 |
d |
rwxr-xr-x |
80 |
test_same_wildcard
|
 |
d |
rwxr-xr-x |
57 |
test_scatter_gather
|
 |
d |
rwxr-xr-x |
57 |
test_scatter_gather_multiple_processes
|
 |
d |
rwxr-xr-x |
131 |
test_script
|
 |
d |
rwxr-xr-x |
97 |
test_script_py
|
 |
d |
rwxr-xr-x |
57 |
test_service_jobs
|
 |
d |
rwxr-xr-x |
57 |
test_set_resources
|
 |
d |
rwxr-xr-x |
75 |
test_shadow
|
 |
d |
rwxr-xr-x |
75 |
test_shadow_copy
|
 |
d |
rwxr-xr-x |
90 |
test_shadow_prefix
|
 |
d |
rwxr-xr-x |
57 |
test_shadowed_log
|
 |
d |
rwxr-xr-x |
75 |
test_shell
|
 |
d |
rwxr-xr-x |
77 |
test_singularity
|
 |
d |
rwxr-xr-x |
81 |
test_singularity_conda
|
 |
d |
rwxr-xr-x |
57 |
test_singularity_global
|
 |
d |
rwxr-xr-x |
98 |
test_singularity_module
|
 |
d |
rwxr-xr-x |
57 |
test_singularity_none
|
 |
d |
rwxr-xr-x |
91 |
test_slurm_mpi
|
 |
d |
rwxr-xr-x |
57 |
test_solver
|
 |
d |
rwxr-xr-x |
56 |
test_source_path
|
 |
d |
rwxr-xr-x |
100 |
test_spaces_in_fnames
|
 |
d |
rwxr-xr-x |
30 |
test_speed
|
 |
d |
rwxr-xr-x |
77 |
test_srcdir
|
 |
d |
rwxr-xr-x |
4,096 |
test_static_remote
|
 |
d |
rwxr-xr-x |
57 |
test_strict_mode
|
 |
d |
rwxr-xr-x |
75 |
test_string_resources
|
 |
d |
rwxr-xr-x |
103 |
test_subworkflow_config
|
 |
d |
rwxr-xr-x |
82 |
test_subworkflows
|
 |
d |
rwxr-xr-x |
81 |
test_symlink_temp
|
 |
d |
rwxr-xr-x |
57 |
test_symlink_time_handling
|
 |
d |
rwxr-xr-x |
91 |
test_temp
|
 |
d |
rwxr-xr-x |
57 |
test_temp_expand
|
 |
d |
rwxr-xr-x |
115 |
test_template_engine
|
 |
d |
rwxr-xr-x |
82 |
test_tes
|
 |
d |
rwxr-xr-x |
57 |
test_threads
|
 |
d |
rwxr-xr-x |
57 |
test_threads0
|
 |
d |
rwxr-xr-x |
156 |
test_tibanna
|
 |
d |
rwxr-xr-x |
57 |
test_tmpdir
|
 |
d |
rwxr-xr-x |
57 |
test_touch
|
 |
d |
rwxr-xr-x |
75 |
test_touch_pipeline_with_temp_dir
|
 |
d |
rwxr-xr-x |
63 |
test_touch_remote_prefix
|
 |
d |
rwxr-xr-x |
57 |
test_touch_with_directories
|
 |
d |
rwxr-xr-x |
107 |
test_unpack_dict
|
 |
d |
rwxr-xr-x |
107 |
test_unpack_list
|
 |
d |
rwxr-xr-x |
57 |
test_until
|
 |
d |
rwxr-xr-x |
135 |
test_update_config
|
 |
d |
rwxr-xr-x |
75 |
test_url_include
|
 |
d |
rwxr-xr-x |
57 |
test_use_rule_same_module
|
 |
d |
rwxr-xr-x |
4,096 |
test_validate
|
 |
d |
rwxr-xr-x |
57 |
test_wildcard_count_ambiguity
|
 |
d |
rwxr-xr-x |
57 |
test_wildcard_keyword
|
 |
d |
rwxr-xr-x |
88 |
test_workflow_profile
|
 |
d |
rwxr-xr-x |
76 |
test_wrapper
|
 |
d |
rwxr-xr-x |
30 |
test_xrootd
|
 |
d |
rwxr-xr-x |
77 |
test_yaml_config
|
 |
- |
rw-r--r-- |
706 |
Snakefile
|
 |
- |
rw-r--r-- |
0 |
__init__.py
|
 |
- |
rw-r--r-- |
9,879 |
common.py
|
 |
- |
rw-r--r-- |
994 |
conftest.py
|
 |
- |
rw-r--r-- |
717 |
test_azure_batch_executor.py
|
 |
- |
rw-r--r-- |
2,279 |
test_expand.py
|
 |
- |
rw-r--r-- |
6,364 |
test_google_lifesciences.py
|
 |
- |
rw-r--r-- |
3,570 |
test_io.py
|
 |
- |
rw-r--r-- |
3,236 |
test_kubernetes.py
|
 |
- |
rw-r--r-- |
1,339 |
test_linting.py
|
 |
- |
rw-r--r-- |
1,766 |
test_persistence.py
|
 |
- |
rw-r--r-- |
3,597 |
test_schema.py
|
 |
- |
rw-r--r-- |
16,998 |
test_script.py
|
 |
- |
rw-r--r-- |
2,749 |
test_slurm.py
|
 |
- |
rw-r--r-- |
2,325 |
test_tes.py
|
 |
- |
rw-r--r-- |
657 |
test_tibanna.py
|
 |
- |
rw-r--r-- |
3,360 |
testapi.py
|
 |
- |
rw-r--r-- |
52,401 |
tests.py
|