package info (click to toggle)
snakemake 7.32.4-8.1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 25,836 kB
  • sloc: python: 32,846; javascript: 1,287; makefile: 247; sh: 163; ansic: 57; lisp: 9

Folder: tests

d .. (parent)
d d rwxr-xr-x 78 knapsack
d d rwxr-xr-x 4,096 linting
d d rwxr-xr-x 30 profile
d d rwxr-xr-x 33 resources
d d rwxr-xr-x 75 test (with parenthese's)
d d rwxr-xr-x 75 test01
d d rwxr-xr-x 75 test02
d d rwxr-xr-x 92 test03
d d rwxr-xr-x 92 test04
d d rwxr-xr-x 75 test05
d d rwxr-xr-x 75 test06
d d rwxr-xr-x 75 test07
d d rwxr-xr-x 94 test08
d d rwxr-xr-x 75 test09
d d rwxr-xr-x 75 test10
d d rwxr-xr-x 102 test11
d d rwxr-xr-x 75 test12
d d rwxr-xr-x 75 test13
d d rwxr-xr-x 4,096 test14
d d rwxr-xr-x 75 test15
d d rwxr-xr-x 44 testHighWorkload
d d rwxr-xr-x 57 test_all_temp
d d rwxr-xr-x 57 test_ancient
d d rwxr-xr-x 57 test_ancient_dag
d d rwxr-xr-x 81 test_archive
d d rwxr-xr-x 57 test_azure_batch
d d rwxr-xr-x 57 test_bash
d d rwxr-xr-x 57 test_batch
d d rwxr-xr-x 57 test_batch_final
d d rwxr-xr-x 77 test_benchmark
d d rwxr-xr-x 57 test_cache_multioutput
d d rwxr-xr-x 72 test_checkpoint_allowed_rules
d d rwxr-xr-x 75 test_checkpoints
d d rwxr-xr-x 75 test_checkpoints_dir
d d rwxr-xr-x 97 test_cloud_checkpoints_issue574
d d rwxr-xr-x 145 test_cluster_cancelscript
d d rwxr-xr-x 113 test_cluster_sidecar
d d rwxr-xr-x 122 test_cluster_statusscript
d d rwxr-xr-x 106 test_cluster_statusscript_multi
d d rwxr-xr-x 81 test_conda
d d rwxr-xr-x 81 test_conda_cmd_exe
d d rwxr-xr-x 81 test_conda_custom_prefix
d d rwxr-xr-x 57 test_conda_function
d d rwxr-xr-x 57 test_conda_named
d d rwxr-xr-x 117 test_conda_pin_file
d d rwxr-xr-x 113 test_conda_python_3_7_script
d d rwxr-xr-x 113 test_conda_python_script
d d rwxr-xr-x 57 test_conditional
d d rwxr-xr-x 140 test_config
d d rwxr-xr-x 155 test_config_merging
d d rwxr-xr-x 79 test_config_yte
d d rwxr-xr-x 76 test_container
d d rwxr-xr-x 97 test_containerized
d d rwxr-xr-x 48 test_convert_to_cwl
d d rwxr-xr-x 102 test_converting_path_for_r_script
d d rwxr-xr-x 57 test_core_dependent_threads
d d rwxr-xr-x 76 test_cwl
d d rwxr-xr-x 76 test_default_remote
d d rwxr-xr-x 76 test_default_resources
d d rwxr-xr-x 57 test_default_target
d d rwxr-xr-x 95 test_deferred_func_eval
d d rwxr-xr-x 100 test_delete_all_output
d d rwxr-xr-x 78 test_delete_output
d d rwxr-xr-x 118 test_deploy_hashing
d d rwxr-xr-x 115 test_deploy_script
d d rwxr-xr-x 77 test_directory
d d rwxr-xr-x 57 test_dup_out_patterns
d d rwxr-xr-x 78 test_dynamic
d d rwxr-xr-x 97 test_dynamic_temp
d d rwxr-xr-x 81 test_empty_include
d d rwxr-xr-x 57 test_ensure
d d rwxr-xr-x 87 test_env_modules
d d rwxr-xr-x 57 test_envvars
d d rwxr-xr-x 57 test_expand_flag
d d rwxr-xr-x 48 test_filegraph
d d rwxr-xr-x 77 test_filesep_windows
d d rwxr-xr-x 57 test_format_params
d d rwxr-xr-x 57 test_format_wildcards
d d rwxr-xr-x 57 test_fstring
d d rwxr-xr-x 57 test_ftp_immediate_close
d d rwxr-xr-x 72 test_generate_unit_tests
d d rwxr-xr-x 123 test_get_log_both
d d rwxr-xr-x 123 test_get_log_complex
d d rwxr-xr-x 123 test_get_log_none
d d rwxr-xr-x 123 test_get_log_stderr
d d rwxr-xr-x 123 test_get_log_stdout
d d rwxr-xr-x 57 test_github_issue105
d d rwxr-xr-x 57 test_github_issue1062
d d rwxr-xr-x 57 test_github_issue1069
d d rwxr-xr-x 75 test_github_issue1158
d d rwxr-xr-x 57 test_github_issue1261
d d rwxr-xr-x 57 test_github_issue1384
d d rwxr-xr-x 57 test_github_issue1389
d d rwxr-xr-x 57 test_github_issue1396
d d rwxr-xr-x 57 test_github_issue1460
d d rwxr-xr-x 30 test_github_issue1469
d d rwxr-xr-x 78 test_github_issue1498
d d rwxr-xr-x 96 test_github_issue1500
d d rwxr-xr-x 73 test_github_issue1542
d d rwxr-xr-x 57 test_github_issue1550
d d rwxr-xr-x 57 test_github_issue1618
d d rwxr-xr-x 4,096 test_github_issue1818
d d rwxr-xr-x 57 test_github_issue1882
d d rwxr-xr-x 57 test_github_issue2142
d d rwxr-xr-x 48 test_github_issue2154
d d rwxr-xr-x 57 test_github_issue261
d d rwxr-xr-x 76 test_github_issue413
d d rwxr-xr-x 78 test_github_issue456
d d rwxr-xr-x 89 test_github_issue52
d d rwxr-xr-x 4,096 test_github_issue627
d d rwxr-xr-x 76 test_github_issue640
d d rwxr-xr-x 57 test_github_issue727
d d rwxr-xr-x 57 test_github_issue78
d d rwxr-xr-x 57 test_github_issue806
d d rwxr-xr-x 57 test_github_issue929
d d rwxr-xr-x 57 test_github_issue988
d d rwxr-xr-x 107 test_github_issue_14
d d rwxr-xr-x 120 test_globwildcards
d d rwxr-xr-x 97 test_google_lifesciences
d d rwxr-xr-x 72 test_group_job_fail
d d rwxr-xr-x 72 test_group_jobs
d d rwxr-xr-x 72 test_group_jobs_attempts
d d rwxr-xr-x 96 test_group_jobs_resources
d d rwxr-xr-x 57 test_group_parallel
d d rwxr-xr-x 72 test_group_with_pipe
d d rwxr-xr-x 57 test_groupid_expand
d d rwxr-xr-x 72 test_groupid_expand_cluster
d d rwxr-xr-x 57 test_gs_requester_pays
d d rwxr-xr-x 77 test_handover
d d rwxr-xr-x 93 test_immediate_submit
d d rwxr-xr-x 57 test_incomplete_params
d d rwxr-xr-x 57 test_inferred_resources
d d rwxr-xr-x 94 test_inoutput_is_path
d d rwxr-xr-x 114 test_input_generator
d d rwxr-xr-x 94 test_issue1037
d d rwxr-xr-x 57 test_issue1041
d d rwxr-xr-x 97 test_issue1046
d d rwxr-xr-x 75 test_issue1083
d d rwxr-xr-x 57 test_issue1085
d d rwxr-xr-x 57 test_issue1092
d d rwxr-xr-x 81 test_issue1093
d d rwxr-xr-x 57 test_issue1281
d d rwxr-xr-x 57 test_issue1284
d d rwxr-xr-x 57 test_issue1331
d d rwxr-xr-x 57 test_issue260
d d rwxr-xr-x 74 test_issue328
d d rwxr-xr-x 72 test_issue381
d d rwxr-xr-x 57 test_issue471
d d rwxr-xr-x 57 test_issue584
d d rwxr-xr-x 57 test_issue612
d d rwxr-xr-x 110 test_issue635
d d rwxr-xr-x 57 test_issue805
d d rwxr-xr-x 57 test_issue823_1
d d rwxr-xr-x 57 test_issue823_2
d d rwxr-xr-x 57 test_issue823_3
d d rwxr-xr-x 72 test_issue850
d d rwxr-xr-x 57 test_issue854
d d rwxr-xr-x 72 test_issue860
d d rwxr-xr-x 57 test_issue894
d d rwxr-xr-x 87 test_issue912
d d rwxr-xr-x 107 test_issue916
d d rwxr-xr-x 72 test_issue930
d d rwxr-xr-x 57 test_issue956
d d rwxr-xr-x 73 test_issue958
d d rwxr-xr-x 75 test_job_properties
d d rwxr-xr-x 101 test_jupyter_notebook
d d rwxr-xr-x 95 test_jupyter_notebook_draft
d d rwxr-xr-x 95 test_keyword_list
d d rwxr-xr-x 92 test_kubernetes
d d rwxr-xr-x 57 test_lazy_resources
d d rwxr-xr-x 83 test_list_untracked
d d rwxr-xr-x 88 test_local_import
d d rwxr-xr-x 57 test_localrule
d d rwxr-xr-x 57 test_log_input
d d rwxr-xr-x 75 test_long_shell
d d rwxr-xr-x 30 test_many_jobs
d d rwxr-xr-x 57 test_match_by_wildcard_names
d d rwxr-xr-x 51 test_metadata_migration
d d rwxr-xr-x 4,096 test_module_complex
d d rwxr-xr-x 4,096 test_module_complex2
d d rwxr-xr-x 75 test_module_input_func
d d rwxr-xr-x 4,096 test_module_local_git
d d rwxr-xr-x 112 test_module_nested
d d rwxr-xr-x 93 test_module_no_prefixing_modified_paths
d d rwxr-xr-x 4,096 test_module_report
d d rwxr-xr-x 78 test_module_wildcard_constraints
d d rwxr-xr-x 79 test_module_with_script
d d rwxr-xr-x 96 test_module_workflow_snakefile_usage
d d rwxr-xr-x 96 test_modules_all
d d rwxr-xr-x 124 test_modules_all_exclude
d d rwxr-xr-x 125 test_modules_meta_wrapper
d d rwxr-xr-x 110 test_modules_peppy
d d rwxr-xr-x 96 test_modules_prefix
d d rwxr-xr-x 92 test_modules_ruledeps_inheritance
d d rwxr-xr-x 79 test_modules_specific
d d rwxr-xr-x 72 test_multicomp_group_jobs
d d rwxr-xr-x 57 test_multiext
d d rwxr-xr-x 142 test_multiple_includes
d d rwxr-xr-x 57 test_name_override
d d rwxr-xr-x 88 test_no_workflow_profile
d d rwxr-xr-x 57 test_nonstr_params
d d rwxr-xr-x 57 test_omitfrom
d d rwxr-xr-x 73 test_output_file_cache
d d rwxr-xr-x 76 test_output_file_cache_remote
d d rwxr-xr-x 57 test_params
d d rwxr-xr-x 96 test_paramspace
d d rwxr-xr-x 96 test_paramspace_single_wildcard
d d rwxr-xr-x 76 test_parser
d d rwxr-xr-x 57 test_parsing_terminal_comment_following_statement
d d rwxr-xr-x 85 test_pathlib
d d rwxr-xr-x 57 test_pathlib_missing_file
d d rwxr-xr-x 90 test_peppy
d d rwxr-xr-x 57 test_persistent_dict
d d rwxr-xr-x 57 test_pipe_depend
d d rwxr-xr-x 57 test_pipes
d d rwxr-xr-x 57 test_pipes2
d d rwxr-xr-x 57 test_pipes_fail
d d rwxr-xr-x 57 test_pipes_multiple
d d rwxr-xr-x 118 test_prebuilt_conda_script
d d rwxr-xr-x 139 test_profile
d d rwxr-xr-x 57 test_protected_symlink_output
d d rwxr-xr-x 77 test_r_wrapper
d d rwxr-xr-x 76 test_remote
d d rwxr-xr-x 57 test_remote_auto
d d rwxr-xr-x 50 test_remote_azure
d d rwxr-xr-x 84 test_remote_gs
d d rwxr-xr-x 57 test_remote_http
d d rwxr-xr-x 4,096 test_remote_irods
d d rwxr-xr-x 76 test_remote_log
d d rwxr-xr-x 57 test_remote_ncbi
d d rwxr-xr-x 57 test_remote_ncbi_simple
d d rwxr-xr-x 57 test_remote_sftp
d d rwxr-xr-x 76 test_remote_zenodo
d d rwxr-xr-x 4,096 test_report
d d rwxr-xr-x 118 test_report_dir
d d rwxr-xr-x 75 test_report_display_code
d d rwxr-xr-x 4,096 test_report_zip
d d rwxr-xr-x 90 test_restartable_job_cmd_exit_1
d d rwxr-xr-x 109 test_restartable_job_qsub_exit_1
d d rwxr-xr-x 57 test_retries
d d rwxr-xr-x 57 test_retries_not_overriden
d d rwxr-xr-x 84 test_rule_defined_in_for_loop
d d rwxr-xr-x 118 test_rule_inheritance_globals
d d rwxr-xr-x 100 test_ruledag
d d rwxr-xr-x 57 test_ruledeps
d d rwxr-xr-x 57 test_run_namedlist
d d rwxr-xr-x 80 test_same_wildcard
d d rwxr-xr-x 57 test_scatter_gather
d d rwxr-xr-x 57 test_scatter_gather_multiple_processes
d d rwxr-xr-x 131 test_script
d d rwxr-xr-x 97 test_script_py
d d rwxr-xr-x 57 test_service_jobs
d d rwxr-xr-x 57 test_set_resources
d d rwxr-xr-x 75 test_shadow
d d rwxr-xr-x 75 test_shadow_copy
d d rwxr-xr-x 90 test_shadow_prefix
d d rwxr-xr-x 57 test_shadowed_log
d d rwxr-xr-x 75 test_shell
d d rwxr-xr-x 77 test_singularity
d d rwxr-xr-x 81 test_singularity_conda
d d rwxr-xr-x 57 test_singularity_global
d d rwxr-xr-x 98 test_singularity_module
d d rwxr-xr-x 57 test_singularity_none
d d rwxr-xr-x 91 test_slurm_mpi
d d rwxr-xr-x 57 test_solver
d d rwxr-xr-x 56 test_source_path
d d rwxr-xr-x 100 test_spaces_in_fnames
d d rwxr-xr-x 30 test_speed
d d rwxr-xr-x 77 test_srcdir
d d rwxr-xr-x 4,096 test_static_remote
d d rwxr-xr-x 57 test_strict_mode
d d rwxr-xr-x 75 test_string_resources
d d rwxr-xr-x 103 test_subworkflow_config
d d rwxr-xr-x 82 test_subworkflows
d d rwxr-xr-x 81 test_symlink_temp
d d rwxr-xr-x 57 test_symlink_time_handling
d d rwxr-xr-x 91 test_temp
d d rwxr-xr-x 57 test_temp_expand
d d rwxr-xr-x 115 test_template_engine
d d rwxr-xr-x 82 test_tes
d d rwxr-xr-x 57 test_threads
d d rwxr-xr-x 57 test_threads0
d d rwxr-xr-x 156 test_tibanna
d d rwxr-xr-x 57 test_tmpdir
d d rwxr-xr-x 57 test_touch
d d rwxr-xr-x 75 test_touch_pipeline_with_temp_dir
d d rwxr-xr-x 63 test_touch_remote_prefix
d d rwxr-xr-x 57 test_touch_with_directories
d d rwxr-xr-x 107 test_unpack_dict
d d rwxr-xr-x 107 test_unpack_list
d d rwxr-xr-x 57 test_until
d d rwxr-xr-x 135 test_update_config
d d rwxr-xr-x 75 test_url_include
d d rwxr-xr-x 57 test_use_rule_same_module
d d rwxr-xr-x 4,096 test_validate
d d rwxr-xr-x 57 test_wildcard_count_ambiguity
d d rwxr-xr-x 57 test_wildcard_keyword
d d rwxr-xr-x 88 test_workflow_profile
d d rwxr-xr-x 76 test_wrapper
d d rwxr-xr-x 30 test_xrootd
d d rwxr-xr-x 77 test_yaml_config
- - rw-r--r-- 706 Snakefile
- - rw-r--r-- 0 __init__.py
- - rw-r--r-- 9,879 common.py
- - rw-r--r-- 994 conftest.py
- - rw-r--r-- 717 test_azure_batch_executor.py
- - rw-r--r-- 2,279 test_expand.py
- - rw-r--r-- 6,364 test_google_lifesciences.py
- - rw-r--r-- 3,570 test_io.py
- - rw-r--r-- 3,236 test_kubernetes.py
- - rw-r--r-- 1,339 test_linting.py
- - rw-r--r-- 1,766 test_persistence.py
- - rw-r--r-- 3,597 test_schema.py
- - rw-r--r-- 16,998 test_script.py
- - rw-r--r-- 2,749 test_slurm.py
- - rw-r--r-- 2,325 test_tes.py
- - rw-r--r-- 657 test_tibanna.py
- - rw-r--r-- 3,360 testapi.py
- - rw-r--r-- 52,401 tests.py