File: Snakefile

package info (click to toggle)
snakemake 7.32.4-8.1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 25,836 kB
  • sloc: python: 32,846; javascript: 1,287; makefile: 247; sh: 163; ansic: 57; lisp: 9
file content (29 lines) | stat: -rw-r--r-- 415 bytes parent folder | download | duplicates (8) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
 
SAMPLES = ["a", "b", "c"]

rule all:
    input:
        "foo.txt",
        "bar.txt"


rule aggregate:
    input:
        expand("{sample}.inter.txt", sample=SAMPLES)
    output:
        "foo.txt"
    shell:
        "touch {output}"


rule feed:
    output:
        temp("{sample}.inter.txt")
    shell:
        "touch {output}"


rule independent:
    output:
        "bar.txt"
    shell:
        "touch {output}"