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Description: Allow running the tests from any current directory
Author: Rebecca N. Palmer <rebecca_palmer@zoho.com>
Forwarded: no
--- a/tests/tests.py
+++ b/tests/tests.py
@@ -1645,29 +1645,29 @@ def test_generate_unit_tests():
@skip_on_windows
def test_metadata_migration():
- outpath = Path(
- "tests/test_metadata_migration/some/veryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryverylong"
+ outpath = dpath(
+ "test_metadata_migration/some/veryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryverylong"
)
os.makedirs(outpath, exist_ok=True)
- metapath = Path(
- "tests/test_metadata_migration/.snakemake/metadata/@c29tZS92ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5L3Zlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5L3Zlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcn/@l2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeS92ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnkvdmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnkvdmVyeXZlcnl2ZXJ5dmVy"
+ metapath = dpath(
+ "test_metadata_migration/.snakemake/metadata/@c29tZS92ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5L3Zlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5L3Zlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcn/@l2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeS92ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnkvdmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnkvdmVyeXZlcnl2ZXJ5dmVy"
)
os.makedirs(metapath, exist_ok=True)
- exppath = Path(
- "tests/test_metadata_migration/expected-results/some/veryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryverylong"
+ exppath = dpath(
+ "test_metadata_migration/expected-results/some/veryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryveryveryveryveryvery/veryveryveryveryveryveryveryveryveryveryveryveryverylong"
)
os.makedirs(exppath, exist_ok=True)
- with open(outpath / "path.txt", "w"):
+ with open(outpath + "/path.txt", "w"):
# generate empty file
pass
# generate artificial incomplete metadata in v1 format for migration
with open(
metapath
- / "eXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeWxvbmcvcGF0aC50eHQ=",
+ + "/eXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeXZlcnl2ZXJ5dmVyeWxvbmcvcGF0aC50eHQ=",
"w",
) as meta:
print('{"incomplete": true, "external_jobid": null}', file=meta)
- with open(exppath / "path.txt", "w") as out:
+ with open(exppath + "/path.txt", "w") as out:
print("updated", file=out)
# run workflow, incomplete v1 metadata should be migrated and trigger rerun of the rule,
|
