File: DataWriter.cpp

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/*++

Module Name:

    DataWriter.cpp

Abstract:

    General file writer.

Environment:

    User mode service.

    Not thread safe.

--*/

#include "stdafx.h"
#include "BigAlloc.h"
#include "Compat.h"
#include "DataWriter.h"
#include "ParallelTask.h"
#include "exit.h"
#include "Bam.h"
#include "Error.h"

using std::min;
using std::max;

//#define VALIDATE_WRITE 1

char *
DataWriterSupplier::generateSortIntermediateFilePathName(AlignerOptions *options)
{
    const char * tempExtension = ".tmp";
    char* tempFileName;
    if (NULL != options->sortIntermediateDirectory) {
        //
        // Pathname is sortIntermediateDirectory + PATH_SEP + terminal component of outputFile.fileName + .tmp
        //
        const char *terminalComponent = strrchr(options->outputFile.fileName, PATH_SEP);
        if (NULL == terminalComponent) {
            terminalComponent = options->outputFile.fileName;
        }
        else {
            terminalComponent++;    // Skips over the PATH_SEP
        }

        size_t len = strlen(options->sortIntermediateDirectory) + 1 + strlen(terminalComponent) + strlen(tempExtension) + 1;     // Last +1 for string terminating null
        // todo: this is going to leak, but there's no easy way to free it, and it's small...
        tempFileName = new char[len];
        sprintf(tempFileName, "%s%c%s%s", options->sortIntermediateDirectory, PATH_SEP, terminalComponent, tempExtension);
    } else {
        size_t len = strlen(options->outputFile.fileName) + strlen(tempExtension) + 1;
        // todo: this is going to leak, but there's no easy way to free it, and it's small...
        tempFileName = new char[len];
        sprintf(tempFileName, "%s%s", options->outputFile.fileName, tempExtension);
    }

    return tempFileName;
}

class AsyncDataWriterSupplier : public DataWriterSupplier
{
public:
    AsyncDataWriterSupplier(const char* i_filename, DataWriter::FilterSupplier* i_filterSupplier,
        FileEncoder* i_encoder, int i_bufferCount, size_t i_bufferSize);

    ~AsyncDataWriterSupplier()
    {
        delete filterSupplier;
    }

    virtual DataWriter* getWriter();

    virtual void close();

private:
    friend class AsyncDataWriter;
    friend class FileEncoder;
    void advance(size_t physical, size_t logical, size_t* o_physical, size_t* o_logical);

    const char* filename;
    AsyncFile* file;
    DataWriter::FilterSupplier* filterSupplier;
    FileEncoder* encoder;
    const int bufferCount;
    const size_t bufferSize;
    ExclusiveLock lock;
    size_t sharedOffset;
    size_t sharedLogical;
    bool closing;
};

class AsyncDataWriter : public DataWriter
{
public:

    AsyncDataWriter(AsyncFile* i_file, AsyncDataWriterSupplier* i_supplier,
        int i_count, size_t i_bufferSize, Filter* i_filter, FileEncoder* i_encoder);

    virtual ~AsyncDataWriter()
    {
        for (int i = 0; i < count; i++) {
            delete batches[i].file;
            BigDealloc(batches[i].buffer);
            batches[i].buffer = NULL;
        }
        delete [] batches;
        DestroyExclusiveLock(&lock);
        if (NULL != filter) {
            delete filter;
            filter = NULL;
        }
    } // ~AsyncDataWriter

    virtual bool getBuffer(char** o_buffer, size_t* o_size);

    virtual void advance(GenomeDistance bytes, GenomeLocation location = 0);

    virtual bool getBatch(int relative, char** o_buffer, size_t* o_size, size_t* o_used, size_t* o_offset, size_t* o_logicalUsed = 0, size_t* o_logicalOffset = NULL);

    virtual bool nextBatch(bool lastBatch = false);
    
    virtual void close();

private:

    void acquireLock()
    { if (encoder != NULL) { AcquireExclusiveLock(&lock); } }

    void releaseLock()
    { if (encoder != NULL) { ReleaseExclusiveLock(&lock); } }

    struct Batch
    {
        char* buffer;
        AsyncFile::Writer* file;
        size_t bufferSizeInit;
        size_t bufferSize;
        size_t used;
        size_t fileOffset;
        size_t logicalUsed;
        size_t logicalOffset;
        EventObject encoded;
    };
    Batch* batches;
    const int count;
    AsyncDataWriterSupplier* supplier;
    int current;
    FileEncoder* encoder;
    ExclusiveLock lock;

    friend class FileEncoder;
};

FileEncoder::FileEncoder(
    int numThreads,
    bool bindToProcessors,
    ParallelWorkerManager* i_manager)
    :
    encoderRunning(false),
    coworker(numThreads == 0 ? NULL
        : new ParallelCoworker(numThreads, bindToProcessors, i_manager, FileEncoder::outputReadyCallback, this)),
    manager(i_manager)
{}

    void
FileEncoder::initialize(
    AsyncDataWriter* i_writer)
{
    writer = i_writer;
    lock = &writer->lock;
    encoderBatch = writer->count - 1;
    if (coworker != NULL) {
        coworker->getManager()->initialize(this);
        coworker->start();
    }
}

    void
FileEncoder::inputReady()
{
    AcquireExclusiveLock(lock);
    if (! encoderRunning) {
        checkForInput();
    }
    ReleaseExclusiveLock(lock);
}

    void
FileEncoder::close()
{
    // wait for pending encodes
    AcquireExclusiveLock(lock);
    int start = encoderBatch;
    int pending = (writer->current + writer->count - start) % writer->count;
    ReleaseExclusiveLock(lock);
    for (int i = 0; i < pending; i++) {
        WaitForEvent(&writer->batches[(start + i) % writer->count].encoded);
    }
    coworker->stop();
}

    void
FileEncoder::outputReadyCallback(
    void *p)
{
    ((FileEncoder*) p)->outputReady();
}

    void
FileEncoder::outputReady()
{
    AcquireExclusiveLock(lock);

    encoderRunning = false;

    // begin writing the buffer to disk
    AsyncDataWriter::Batch* write = &writer->batches[encoderBatch];
    writer->supplier->advance(write->used, 0, &write->fileOffset, &write->logicalOffset);
#ifdef VALIDATE_WRITE
    fprintf(stderr, "outputReady beginWrite #%d @%lld: %lld bytes\n", encoderBatch, write->fileOffset, write->used);
    if (!BgzfHeader::validate(write->buffer, write->used)) {
        WriteErrorMessage("BGZF Header validation failed. toUsed:%lld\n", write->used);
        soft_exit(1);
    }
#endif
    if (! write->file->beginWrite(write->buffer, write->used, write->fileOffset, NULL)) {
        WriteErrorMessage("error: file write %lld bytes at offset %lld failed\n", write->used, write->fileOffset);
        soft_exit(1);
    }

    //
    // Shrink MarkDup buffers to reduce memory consumption
    //
    if (write->bufferSize > write->bufferSizeInit) {
        if (!write->file->waitForCompletion()) {
            WriteErrorMessage("error: file write failed\n");
            soft_exit(1);
        }
        size_t newBufferSize = write->bufferSizeInit;
        char* newBuffer = (char*)BigAlloc(newBufferSize);
        if (newBuffer == NULL) {
            WriteErrorMessage("Unable to allocate %lld bytes for write buffer\n", newBufferSize);
            soft_exit(1);
        }
#ifdef VALIDATE_WRITE
        fprintf(stderr, "Shrinking MarkDup buffer from %lld to %lld bytes\n", write->bufferSize, newBufferSize);
#endif
        BigDealloc(write->buffer);
        write->buffer = newBuffer;
        write->bufferSize = newBufferSize;
    }

    AllowEventWaitersToProceed(&write->encoded);

    // check for more work
    checkForInput();

    ReleaseExclusiveLock(lock);
}

    void
FileEncoder::checkForInput()
{
    // look for another block ready to encode
    while (true) {
        int nextBatch = (encoderBatch + 1) % writer->count;
        if (nextBatch == writer->current) {
            break;
        }
        encoderBatch = nextBatch;
        AsyncDataWriter::Batch* encode = &writer->batches[encoderBatch];
#ifdef VALIDATE_WRITE
        fprintf(stderr, "Encoding batch %d, used %lld\n", encoderBatch, encode->used);
#endif
        encoderRunning = true;
        coworker->step();
        break;
    }
}

    void
FileEncoder::setupEncode(
    int relative)
{
    encoderBatch = (writer->current + relative + writer->count) % writer->count;
}

    void
FileEncoder::getEncodeBatch(
    char** o_batch,
    size_t* o_batchSize,
    size_t* o_batchUsed)
{
    AsyncDataWriter::Batch* batch = &writer->batches[encoderBatch];
    *o_batch = batch->buffer;
    *o_batchSize = batch->bufferSize;
    *o_batchUsed = batch->used;
    //fprintf(stderr, "getEncodeBatch #%d: %lld/%lld\n", encoderBatch, batch->used, batch->bufferSize);
}

    void
FileEncoder::getOffsets(
    size_t* o_logicalOffset,
    size_t* o_physicalOffset)
{
    // logical has already been set correctly in batch
    *o_logicalOffset = writer->batches[encoderBatch].logicalOffset;
    // physical is not yet updated, use shared
    *o_physicalOffset = writer->supplier->sharedOffset;
}

    void
FileEncoder::setEncodedBatchSize(
    size_t newSize)
{
    size_t old = writer->batches[encoderBatch].used;
    //fprintf(stderr, "setEncodedBatchSize #%d %lld -> %lld\n", encoderBatch, old, newSize);
    if (newSize != old) {
        AcquireExclusiveLock(lock);
        AsyncDataWriter::Batch* batch = &writer->batches[encoderBatch];
        batch->logicalUsed = batch->used;
        batch->used = newSize;
        ReleaseExclusiveLock(lock);
    }
}

AsyncDataWriter::AsyncDataWriter(
    AsyncFile* i_file,
    AsyncDataWriterSupplier* i_supplier, 
    int i_count,
    size_t i_bufferSize,
    Filter* i_filter,
    FileEncoder* i_encoder)
    :
    DataWriter(i_filter),
    encoder(i_encoder),
    supplier(i_supplier),
    count(i_count),
    current(0)
{
    _ASSERT(count >= 2);
    batches = new Batch[count];
    for (int i = 0; i < count; i++) {
        batches[i].buffer = (char*)BigAlloc(i_bufferSize);
        if (batches[i].buffer == NULL) {
            WriteErrorMessage("Unable to allocate %lld bytes for write buffer\n", i_bufferSize);
            soft_exit(1);
        }
        batches[i].bufferSizeInit = i_bufferSize;
        batches[i].bufferSize = i_bufferSize;
        batches[i].file = i_file->getWriter();
        batches[i].used = 0;
        batches[i].fileOffset = 0;
        batches[i].logicalUsed = 0;
        batches[i].logicalOffset = 0;
        if (encoder != NULL) {
            CreateEventObject(&batches[i].encoded);
            AllowEventWaitersToProceed(&batches[i].encoded); // initialize so empty bufs are available
        }
    }

    InitializeExclusiveLock(&lock);
    if (encoder != NULL) {
        encoder->initialize(this);
    }
}
    
    bool
AsyncDataWriter::getBuffer(
    char** o_buffer,
    size_t* o_size)
{
    *o_buffer = batches[current].buffer + batches[current].used;
    *o_size = batches[current].bufferSize - batches[current].used;
    return true;
}

    void
AsyncDataWriter::advance(
    GenomeDistance bytes,
    GenomeLocation location)
{
    _ASSERT((size_t)bytes <= batches[current].bufferSize - batches[current].used);
    char* data = batches[current].buffer + batches[current].used;
    size_t batchOffset = batches[current].used;
    batches[current].used = min<long long>(batches[current].bufferSize, batchOffset + bytes);
    if (filter != NULL) {
        //_int64 start = timeInNanos();
        filter->onAdvance(this, batchOffset, data, bytes, location);
        //InterlockedAdd64AndReturnNewValue(&FilterTime, timeInNanos() - start);
    }
}

    bool
AsyncDataWriter::getBatch(
    int relative,
    char** o_buffer,
    size_t* o_size,
    size_t* o_used,
    size_t* o_offset,
    size_t* o_logicalUsed,
    size_t* o_logicalOffset)
{
    if (relative < 1 - count || relative > count - 1) {
        return false;
    }
    if (encoder != NULL && relative <= ((encoder->encoderBatch - current + count) % count) - count) {
        return false;
    }
    int index = (current + relative + count) % count; // ensure non-negative
    Batch* batch = &batches[index];
    *o_buffer = batch->buffer;
    if (o_size != NULL) {
        *o_size = batch->bufferSize;
    }
    if (o_used != NULL) {
        *o_used = relative <= 0 ? batch->used : 0;
    }
    if (o_offset != NULL) {
        *o_offset = relative <= 0 ? batch->fileOffset : 0;
    }
    if (o_logicalUsed != NULL) {
        *o_logicalUsed = relative <=0 ? batch->logicalUsed: 0;
    }
    if (o_logicalOffset != NULL) {
        *o_logicalOffset = relative <=0 ? batch->logicalOffset : 0;
    }
    if (relative >= 0) {
        if (encoder != NULL) {
            WaitForEvent(&batch->encoded);
        }
        batch->file->waitForCompletion();
    }
    return true;
}

    bool
AsyncDataWriter::nextBatch(bool lastBatch)
{
    _int64 start = timeInNanos();
    if (encoder != NULL) {
        WaitForEvent(&batches[(current + 1) % count].encoded);
    }
    acquireLock();
    int written = current;
    Batch* write = &batches[written];
    write->logicalUsed = write->used;
    current = (current + 1) % count;
    if (!batches[current].file->waitForCompletion()) {
        WriteErrorMessage("error: file write failed\n");
        soft_exit(1);
    }
#ifdef VALIDATE_WRITE
    fprintf(stderr, "nextBatch reset %d used=0 count %d\n", current, count);
#endif
    batches[current].used = 0;
    bool newBuffer = filter != NULL && (filter->filterType == CopyFilter || filter->filterType == TransformFilter);
    bool newSize = filter != NULL && (filter->filterType == TransformFilter || filter->filterType == ResizeFilter || filter->filterType == DupMarkFilter);
    if (newSize) {
        // advisory only
        write->fileOffset = supplier->sharedOffset;
        write->logicalOffset = supplier->sharedLogical;
    } else {
        supplier->advance(encoder == NULL ? write->used : 0, write->logicalUsed, &write->fileOffset, &write->logicalOffset);
    }

    bool suppressWrite = false;

    if (filter != NULL) {
        bool needMoreBuffer = false; // Does MarkDup require a larger buffer to store all duplicate candidates
        size_t bytesRead = 0;
        size_t n = filter->onNextBatch(this, write->fileOffset, write->used, lastBatch, &needMoreBuffer, &bytesRead);
        if (n == UINT64_MAX) // The filter's hacky way of telling us it's squirreled away the data and we shouldn't write it to the file.
        {
            _ASSERT(!newSize);
            _ASSERT(lastBatch); // Is this really necessary?  You could imagine filters that save more than the last batch.
            suppressWrite = true;
        }
        if (newSize) {
            if (filter->filterType == DupMarkFilter) {
                if (needMoreBuffer) {
                    size_t newBufferSize = write->bufferSize * 2;
                    char* newBuffer = (char*)BigAlloc(newBufferSize);
                    if (newBuffer == NULL) {
                        WriteErrorMessage("Unable to allocate %lld bytes for write buffer\n", newBufferSize);
                        soft_exit(1);
                    }
                    memcpy(newBuffer, write->buffer, write->used);
                    BigDealloc(batches[current].buffer);
                    batches[current].used = write->used;
                    batches[current].logicalUsed = batches[current].used;
                    batches[current].bufferSize = newBufferSize;
                    batches[current].buffer = newBuffer;
#ifdef VALIDATE_WRITE
                    fprintf(stderr, "1-Realloc MarkDup buffer. Used: %lld New: %lld\n", write->used, newBufferSize);
#endif
                    write->used = 0;
                    write->logicalUsed = 0;
                } else if (bytesRead < write->used) {
                    batches[current].used = write->used - bytesRead;
                    batches[current].logicalUsed = batches[current].used;
                    if (batches[current].used > batches[current].bufferSize) {
                        size_t newBufferSize = write->bufferSize;
                        char* newBuffer = (char*)BigAlloc(newBufferSize);
                        if (newBuffer == NULL) {
                            WriteErrorMessage("Unable to allocate %lld bytes for write buffer\n", newBufferSize);
                            soft_exit(1);
                        }
                        memcpy(newBuffer, write->buffer + bytesRead, batches[current].used);
                        BigDealloc(batches[current].buffer);
                        batches[current].bufferSize = newBufferSize;
                        batches[current].buffer = newBuffer;
#ifdef VALIDATE_WRITE
                        fprintf(stderr, "2-Realloc MarkDup buffer. Used: %lld New: %lld\n", write->used, newBufferSize);
#endif
                    } else {
                        memcpy(batches[current].buffer, write->buffer + bytesRead, batches[current].used);
                    }
                    write->used = n;
                    write->logicalUsed = n;
                }
            }
            write->used = n;
#ifdef VALIDATE_WRITE
            fprintf(stderr, "batch:%d, used:%lld, logicalUsed:%lld, batchSize:%lld, filterType:%d\n", written, write->used, write->logicalUsed, write->bufferSize, filter->filterType);
#endif
            supplier->advance(encoder == NULL ? write->used : 0, write->logicalUsed, &write->fileOffset, &write->logicalOffset);
        }
        if (newBuffer) {
            // current has used>0, written has logicalUsed>0, for compressed & uncompressed data respectively
            batches[current].used = write->used;
            batches[current].fileOffset = write->fileOffset;
            batches[current].logicalUsed = 0;
            batches[current].logicalOffset = write->logicalOffset;
            write->used = 0;
            written = current;
            write = &batches[written];
            current = (current + 1) % count;

            if (!batches[current].file->waitForCompletion()) {
                WriteErrorMessage("error: file write failed\n");
                soft_exit(1);
            }
            batches[current].used = 0;
            batches[current].logicalUsed = 0;
        }
    }
    _int64 start2 = timeInNanos();
    releaseLock();

    InterlockedAdd64AndReturnNewValue(&FilterTime, start2 - start);
    if (encoder == NULL) {
        //_ASSERT(BgzfHeader::validate(write->buffer, write->used)); //!! remove before checkin
        if (!suppressWrite) {
            if (!write->file->beginWrite(write->buffer, write->used, write->fileOffset, NULL)) {
                WriteErrorMessage("error: file write %lld bytes at offset %lld failed\n", write->used, write->fileOffset);
                soft_exit(1);
            }
        }
    } else {
        PreventEventWaitersFromProceeding(&write->encoded);
        encoder->inputReady();
    }


    InterlockedAdd64AndReturnNewValue(&WaitTime, timeInNanos() - start2);
    return true;
}

    void
AsyncDataWriter::close()
{
    nextBatch(true); // ensure last buffer gets written.  true says its the last buffer for anyone who cares
    if (encoder != NULL) {
        encoder->close();
        for (int i = 0; i < count; i++) {
            DestroyEventObject(&batches[i].encoded);
        }
    }
    for (int i = 0; i < count; i++) {
        batches[i].file->close();
    }
}

AsyncDataWriterSupplier::AsyncDataWriterSupplier(
    const char* i_filename,
    DataWriter::FilterSupplier* i_filterSupplier,
    FileEncoder* i_encoder,
    int i_bufferCount,
    size_t i_bufferSize)
    :
    filename(i_filename),
    filterSupplier(i_filterSupplier),
    encoder(i_encoder),
    bufferCount(i_bufferCount),
    bufferSize(i_bufferSize),
    sharedOffset(0),
    sharedLogical(0),
    closing(false)
{
    file = AsyncFile::open(filename, true);
    if (file == NULL) {
        WriteErrorMessage("failed to open %s for write\n", filename);
        soft_exit(1);
    }
    InitializeExclusiveLock(&lock);
}

    DataWriter*
AsyncDataWriterSupplier::getWriter()
{
    return new AsyncDataWriter(file, this, bufferCount, bufferSize,
        filterSupplier && ! closing ? filterSupplier->getFilter() : NULL,
        closing ? NULL : encoder);
}

    void
AsyncDataWriterSupplier::close()
{
    closing = true;
    if (filterSupplier != NULL) {
        filterSupplier->onClosing(this);
    }
    file->close();
    if (filterSupplier != NULL) {
        filterSupplier->onClosed(this);
    }
    DestroyExclusiveLock(&lock);
}
    void
AsyncDataWriterSupplier::advance(
    size_t physical,
    size_t logical,
    size_t* o_physical,
    size_t* o_logical)
{
    AcquireExclusiveLock(&lock);
    *o_physical = sharedOffset;
    sharedOffset += physical;
    *o_logical = sharedLogical;
    sharedLogical += logical;
#ifdef VALIDATE_WRITE
    fprintf(stderr, "advance %lld + %lld = %lld, logical %lld + %lld = %lld\n", *o_physical, physical, sharedOffset, *o_logical, logical, sharedLogical);
#endif
    ReleaseExclusiveLock(&lock);
}

    DataWriterSupplier*
DataWriterSupplier::create(
    const char* filename,
    size_t bufferSize,
    bool emitInternalScore,
    char *internalScoreTag,
    DataWriter::FilterSupplier* filterSupplier,
    FileEncoder* encoder,
    int count)
{
    return new AsyncDataWriterSupplier(filename, filterSupplier, encoder, count, bufferSize);
}

class ComposeFilter : public DataWriter::Filter
{
public:
    ComposeFilter(DataWriter::Filter* i_a, DataWriter::Filter* i_b) :
        Filter(max(i_a->filterType, i_b->filterType)), a(i_a), b(i_b) {}

    virtual ~ComposeFilter()
    { delete a; delete b; }
    
	virtual void inHeader(bool flag)
	{
		a->inHeader(flag);
		b->inHeader(flag);
	}

    virtual void onAdvance(DataWriter* writer, size_t batchOffset, char* data, GenomeDistance bytes, GenomeLocation location)
    {
        a->onAdvance(writer, batchOffset, data, bytes, location);
        b->onAdvance(writer, batchOffset, data, bytes, location);
    }

    virtual size_t onNextBatch(DataWriter* writer, size_t offset, size_t bytes, bool lastBatch, bool* needMoreBuffer, size_t* fromBufferUsed)
    {
        size_t sa = a->onNextBatch(writer, offset, bytes, lastBatch, needMoreBuffer, fromBufferUsed);
        size_t sb = b->onNextBatch(writer, offset, sa, lastBatch, needMoreBuffer, fromBufferUsed);
        return sb;
    }

private:
    DataWriter::Filter* a;
    DataWriter::Filter* b;
};

class ComposeFilterSupplier : public DataWriter::FilterSupplier
{
public:
    ComposeFilterSupplier(DataWriter::FilterSupplier* i_a, DataWriter::FilterSupplier* i_b) :
        FilterSupplier(max(i_a->filterType, i_b->filterType)), a(i_a), b(i_b) {}

    virtual ~ComposeFilterSupplier()
    { delete a; delete b; }
    
    virtual DataWriter::Filter* getFilter()
    { return new ComposeFilter(a->getFilter(), b->getFilter()); }

    virtual void onClosing(DataWriterSupplier* supplier)
    {
        a->onClosing(supplier);
        b->onClosing(supplier);
    }
    
    virtual void onClosed(DataWriterSupplier* supplier)
    {
        a->onClosed(supplier);
        b->onClosed(supplier);
    }

private:
    DataWriter::FilterSupplier* a;
    DataWriter::FilterSupplier* b;
};

    DataWriter::FilterSupplier*
DataWriter::FilterSupplier::compose(
    DataWriter::FilterSupplier* other)
{
    return new ComposeFilterSupplier(this, other);
}

volatile _int64 DataWriter::WaitTime = 0;
volatile _int64 DataWriter::FilterTime = 0;


StdoutAsyncFile::StdoutAsyncFile()
{
    if (anyCreated) {
        WriteErrorMessage("You can only ever write to stdout once per SNAP run (even if you're doing multiple runs with the comma syntax\n");
        soft_exit(1);
    }
    anyCreated = true;

#ifdef _MSC_VER
    int result = _setmode( _fileno( stdout ), _O_BINARY );  // puts stdout in to non-translated mode, so if we're writing compressed data windows' CRLF processing doesn't destroy it.
    if (-1 == result) {
        WriteErrorMessage("StdoutAsyncFile::freopen to change to untranslated mode failed\n");
        soft_exit(1);
    }
#endif // _MSC_VER

    writeElementQueue->next = writeElementQueue->prev = writeElementQueue;
    highestOffsetCompleted = 0;

    InitializeExclusiveLock(&lock);
    CreateEventObject(&unexaminedElementsOnQueue);
    CreateEventObject(&elementsCompleted);
    PreventEventWaitersFromProceeding(&unexaminedElementsOnQueue);
    PreventEventWaitersFromProceeding(&elementsCompleted);
    CreateSingleWaiterObject(&consumerThreadDone);
    

    closing = false;

    StartNewThread(ConsumerThreadMain, this);
}

    StdoutAsyncFile *
StdoutAsyncFile::open(const char *filename, bool write)
{
    if (strcmp("-", filename) || !write) {
        WriteErrorMessage("StdoutAsynFile must be named - and must be opened for write.\n");
        soft_exit(1);
    }

    return new StdoutAsyncFile();
}
class StdoutAsyncFileWriter : public AsyncFile::Writer
{
public:
    StdoutAsyncFileWriter(StdoutAsyncFile *i_asyncFile);
    ~StdoutAsyncFileWriter() {}

    // waits for all writes to complete, frees resources
    bool close();

    // begin a write; if there is already a write in progress, might wait for it to complete
    bool beginWrite(void* buffer, size_t length, size_t offset, size_t *bytesWritten);

    // wait for all prior beginWrites to complete
    bool waitForCompletion();

private:
    bool                  anyWritesStarted;
    size_t                highestOffsetWritten;
    StdoutAsyncFile     *asyncFile;
};

StdoutAsyncFileWriter::StdoutAsyncFileWriter(StdoutAsyncFile *i_asyncFile)
{
    asyncFile = i_asyncFile;
    highestOffsetWritten = 0;
    anyWritesStarted = false;
}

    bool
StdoutAsyncFileWriter::close()
 {
     return waitForCompletion();
 }

    bool
StdoutAsyncFileWriter::beginWrite(void* buffer, size_t length, size_t offset, size_t *bytesWritten)
{
    _ASSERT(offset > highestOffsetWritten || !anyWritesStarted);
    //fprintf(stderr, "StdoutAsyncFileWriter::beginWrite(0x%llx, %lld, %lld)\n", buffer, length, offset);
    asyncFile->beginWrite(buffer, length, offset, bytesWritten);
    highestOffsetWritten = offset + length;
    anyWritesStarted = true;

    return true;
}

    bool
StdoutAsyncFileWriter::waitForCompletion()
{
    if (!anyWritesStarted) {
        return true;
    }
    asyncFile->waitForCompletion(highestOffsetWritten);

    return true;
}

StdoutAsyncFile::~StdoutAsyncFile() 
{
    DestroyExclusiveLock(&lock);
    DestroyEventObject(&unexaminedElementsOnQueue);
    DestroyEventObject(&elementsCompleted);
}

    bool 
StdoutAsyncFile::close()
{
    AcquireExclusiveLock(&lock);
    closing = true;
    AllowEventWaitersToProceed(&unexaminedElementsOnQueue);
    ReleaseExclusiveLock(&lock);

    WaitForSingleWaiterObject(&consumerThreadDone);

    return true;
}

    AsyncFile::Writer* 
StdoutAsyncFile::getWriter()
{
    return new StdoutAsyncFileWriter(this);
}
    
    AsyncFile::Reader* 
StdoutAsyncFile::getReader()
{
    WriteErrorMessage("StdoutAsyncFile::getReader() called.\n");
    soft_exit(1);
    return NULL;
}

    _int64
StdoutAsyncFile::getSize()
{
    return -1;
}

    void
StdoutAsyncFile::ConsumerThreadMain(void *param)
{
    StdoutAsyncFile *file = (StdoutAsyncFile *)param;
    SingleWaiterObject *doneObject = &file->consumerThreadDone;
    file->runConsumer();
    SignalSingleWaiterObject(doneObject);
}

    void 
StdoutAsyncFile::beginWrite(void *buffer, size_t length, size_t offset, size_t *o_bytesWritten)
{
    if (0 == length) {
        return;
    }
    WriteElement *element = new WriteElement;
    element->buffer = buffer;
    element->length = length;
    element->offset = offset;
    element->o_bytesWritten = o_bytesWritten;

    AcquireExclusiveLock(&lock);
    _ASSERT(offset >= highestOffsetCompleted);
    //
    // The queue is in order.  See if this element goes first.
    //
    if (isQueueEmpty() || offset < writeElementQueue->next->offset) {
        _ASSERT(isQueueEmpty() || offset <= writeElementQueue->next->offset);  // It fits entirely before the next element
        element->enqueue(writeElementQueue);
        if (element->offset == highestOffsetCompleted) {
            //
            // Wake the consumer, this is ready to write.
            //
            AllowEventWaitersToProceed(&unexaminedElementsOnQueue);
        }
    } else {
        //
        // It isn't the first thing on the queue.  Figure out where it goes.
        //
        WriteElement *possiblePredecessor = writeElementQueue->next;
        while (possiblePredecessor->next != writeElementQueue && possiblePredecessor->next->offset < offset) {
            possiblePredecessor = possiblePredecessor->next;
        }
        _ASSERT(possiblePredecessor->offset < offset);

        element->enqueue(possiblePredecessor);
    }
    ReleaseExclusiveLock(&lock);
}
    void 
StdoutAsyncFile::waitForCompletion(size_t offset)
{
    AcquireExclusiveLock(&lock);
    while (offset > highestOffsetCompleted) {
        PreventEventWaitersFromProceeding(&elementsCompleted);
        ReleaseExclusiveLock(&lock);
        WaitForEvent(&elementsCompleted);
        AcquireExclusiveLock(&lock);
    }
    ReleaseExclusiveLock(&lock);
}

    void
StdoutAsyncFile::runConsumer()
{
    size_t maxWriteSize = 1024 * 1024;

    AcquireExclusiveLock(&lock);
    for (;;) {
        if (isQueueEmpty() && closing) {
            ReleaseExclusiveLock(&lock);
            //
            // Done.  The caller is responsible for signalling the consumerThreadDone object.
            //
            return;
        }

        if (isQueueEmpty() || writeElementQueue->next->offset != highestOffsetCompleted) {
            //
            // Wait for work.
            //
            ReleaseExclusiveLock(&lock);
            WaitForEvent(&unexaminedElementsOnQueue);
            AcquireExclusiveLock(&lock);
            PreventEventWaitersFromProceeding(&unexaminedElementsOnQueue);
            continue;
        }

        //
        // We have the next write queued.  Write it.  Use a loop in case fwrite doesn't take the whole thing at once.
        //
        WriteElement *element = writeElementQueue->next;
        //fprintf(stderr,"StdoutAsyncFile::runConsumer(): writing buffer at 0x%llx, size %lld\n", element->buffer, element->length);
        ReleaseExclusiveLock(&lock);
        size_t bytesLeftToWrite = element->length;
        size_t totalBytesWritten = 0;
        while (bytesLeftToWrite > 0) {
            size_t bytesToWrite = __min(bytesLeftToWrite, maxWriteSize);
            size_t bytesWritten = fwrite((char *)element->buffer + totalBytesWritten, 1, bytesToWrite, stdout);
            _ASSERT(bytesWritten <= bytesToWrite);
            if (0 == bytesWritten) {
                if (ENOMEM == errno && maxWriteSize > 1024) {
                    //
                    // For whatever reason, sometimes trying to write too much to stdout generates an ENOMEM (though we have tons of memory).  
                    // If we see that and we're not already at a small size, just reduce our max write size and try again.
                    //
                    maxWriteSize /= 2;
                } else {
                    WriteErrorMessage("StdoutAsyncFile::runConsumer(): fwrite failed %d\n", errno);
                    soft_exit(1);
                }
            }
            bytesLeftToWrite -= bytesWritten;
            totalBytesWritten += bytesWritten;
        }

        if (NULL != element->o_bytesWritten) {
            *element->o_bytesWritten = totalBytesWritten;
        }
        
        AcquireExclusiveLock(&lock);
        _ASSERT(writeElementQueue->next == element);
        element->dequeue();
        highestOffsetCompleted = element->offset + element->length;

        AllowEventWaitersToProceed(&elementsCompleted);
        delete element;
    }
    /*NOTREACHED*/
}
    void
StdoutAsyncFile::WriteElement::enqueue(WriteElement *previous)
{
    next = previous->next;
    prev = previous;
    prev->next = this;
    next->prev = this;
}

    void
StdoutAsyncFile::WriteElement::dequeue()
{
    next->prev = prev;
    prev->next = next;

    next = prev = NULL;
}

bool StdoutAsyncFile::anyCreated = false;