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/*++
Module Name:
options.h
Abstract:
Compile time options for cSNAP
Authors:
Bill Bolosky, September, 2011
Environment:
User mode service.
This class is NOT thread safe. It's the caller's responsibility to ensure that
at most one thread uses an instance at any time.
Revision History:
Adapted from Matei Zaharia's Scala implementation.
--*/
#pragma once
#ifndef USE_DEVTEAM_OPTIONS
#define USE_DEVTEAM_OPTIONS 0 // Options only for the development team, not for the release version
#endif // USE_DEVTEAM_OPTIONS
#ifndef INSTRUMENTATION_FOR_PAPER
#define INSTRUMENTATION_FOR_PAPER 0 // Turn this on to generate raw data about hit sets and their intersections for the paper
#endif // INSTRUMENTATION_FOR_PAPER
#ifndef HIT_DEPTH_COUNTING
#define HIT_DEPTH_COUNTING 0 // This is a special piece of code that generates information about seeding for an entire genome.
#endif // HIT_DEPTH_COUNTING
#ifndef TIME_HISTOGRAM
#define TIME_HISTOGRAM 0 // Generate histograms of reads by time to align, by MAPQ and by final edit distance (NM score)
#endif // TIME_HISTOGRAM
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