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Source: snp-sites
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Jorge Soares <j.s.soares@gmail.com>,
Andreas Tille <tille@debian.org>,
Sascha Steinbiss <sascha@steinbiss.name>
Section: science
Priority: optional
Build-Depends: debhelper (>= 9.0.0),
autotools-dev,
zlib1g-dev,
check,
pkg-config,
dh-autoreconf,
d-shlibs,
asciidoctor
Standards-Version: 3.9.8
Testsuite: autopkgtest
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/snp-sites.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/snp-sites.git
Homepage: https://github.com/sanger-pathogens/snp-sites
Package: snp-sites
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
libsnp-sites1
Description: Binary code for the package snp-sites
This program finds single nucleotide polymorphism (SNP) sites from
multi-fasta alignment input files (which might be compressed). Its
output can be in various widely used formats (Multi Fasta Alignment,
Vcf, phylip).
.
The software has been developed at the Wellcome Trust Sanger Institute.
.
A Single Nucleotide - polymorphism (SNP, pronounced snip; plural snips)
is a DNA sequence variation occurring when a Single Nucleotide — A, T, C
or G — in the genome (or other shared sequence) differs between members
of a biological species or paired chromosomes. For example, two
sequenced DNA fragments from different individuals, AAGCCTA to AAGCTTA,
contain a difference in a single nucleotide. In this case there are two
alleles. Almost all common SNPs have only two alleles.
Package: libsnp-sites1
Architecture: any
Section: libs
Depends: ${shlibs:Depends},
${misc:Depends}
Description: Shared libraries of the package snp-sites
Snp-sites finds single nucleotide polymorphism (SNP) sites from
multi-fasta alignment input files (which might be compressed). Its
output can be in various widely used formats (Multi Fasta Alignment,
Vcf, phylip).
.
The software has been developed at the Wellcome Trust Sanger Institute.
.
This package contains the dynamic library uses by snp-sites.
Package: libsnp-sites1-dev
Architecture: any
Section: libdevel
Depends: ${shlibs:Depends},
${misc:Depends},
libsnp-sites1 (= ${binary:Version})
Conflicts: libsnp-sites-dev
Provides: libsnp-sites-dev
Description: Static libraries and header files for the package snp-sites
Snp-sites finds single nucleotide polymorphism (SNP) sites from
multi-fasta alignment input files (which might be compressed). Its
output can be in various widely used formats (Multi Fasta Alignment,
Vcf, phylip).
.
The software has been developed at the Wellcome Trust Sanger Institute.
.
This package contains the development files to include snp-sites
into your own code. The library enables Python developers to make
snp-sites function calls (Python bindings) through the Boost Python
Library.
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