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alignment_file_multiple_lines_per_sequence.aln
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alignment_file_one_line_per_sequence.aln
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alignment_file_one_line_per_sequence.aln.gz
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alignment_file_one_line_per_sequence.aln.phylip
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alignment_file_one_line_per_sequence.aln.snp_sites.aln
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alignment_file_one_line_per_sequence.aln.vcf
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alignment_file_one_line_per_sequence_reference.aln.phylip
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alignment_file_one_line_per_sequence_reference.snp_sites.aln
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alignment_file_with_n.aln
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alignment_file_with_n.aln.phylip
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alignment_file_with_n.aln.snp_sites.aln
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alignment_file_with_n.aln.vcf
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pure_mode_alignment.aln
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pure_mode_alignment.aln.phylip
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pure_mode_alignment.aln.snp_sites.aln
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pure_mode_alignment.aln.vcf
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pure_mode_monomorphic_alignment.aln
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pure_mode_monomorphic_alignment.aln.phylip
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pure_mode_monomorphic_alignment.aln.snp_sites.aln
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pure_mode_monomorphic_alignment.aln.vcf
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small_alignment.aln
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small_alignment.constant_site_counts.txt
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uneven_alignment.aln
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