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Description: skipping tests requiring non existing files
I guess such tests should rather be integration tests.
Author: Pierre Gruet <pgt@debian.org>
Forwarded: not-needed
Last-Update: 2022-01-29
--- a/src/test/java/org/snpeff/snpEffect/testCases/unity/TestCasesCytoBands.java
+++ b/src/test/java/org/snpeff/snpEffect/testCases/unity/TestCasesCytoBands.java
@@ -1,5 +1,6 @@
package org.snpeff.snpEffect.testCases.unity;
+import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import org.snpeff.interval.*;
import org.snpeff.snpEffect.Config;
@@ -18,6 +19,7 @@
/**
* Test that we can load cytobands
*/
+ @Disabled("Needed data are not in the source tarball")
@Test
public void test01() {
Log.debug("Test");
@@ -35,6 +37,7 @@
/**
* Query cytobands
*/
+ @Disabled("Needed data are not in the source tarball")
@Test
public void test02() {
Log.debug("Test");
--- a/src/test/java/org/snpeff/snpEffect/testCases/unity/TestCasesGenomicSequences.java
+++ b/src/test/java/org/snpeff/snpEffect/testCases/unity/TestCasesGenomicSequences.java
@@ -1,5 +1,6 @@
package org.snpeff.snpEffect.testCases.unity;
+import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import org.snpeff.binseq.GenomicSequences;
import org.snpeff.interval.Chromosome;
@@ -56,6 +57,7 @@
* Create many small chromosomes, check that they are saved in only one sequences.bin file
* Test that we can recover the exact sequences
*/
+ @Disabled("Needs data that are not in the tarball. This is rather an integration test.")
@Test
public void test_01() {
Log.debug("Test");
@@ -115,6 +117,7 @@
* and the large ones are saved into separate files
* Test that we can recover the exact sequences
*/
+ @Disabled("Needs data that are not in the tarball. This is rather an integration test.")
@Test
public void test_02() {
Log.debug("Test");
--- a/src/test/java/org/snpeff/snpEffect/testCases/unity/TestCasesNmers.java
+++ b/src/test/java/org/snpeff/snpEffect/testCases/unity/TestCasesNmers.java
@@ -1,5 +1,6 @@
package org.snpeff.snpEffect.testCases.unity;
+import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
import org.snpeff.binseq.coder.DnaCoder;
import org.snpeff.nmer.Nmer;
@@ -47,6 +48,7 @@
}
}
+ @Disabled("Needed data are not in the source tarball")
@Test
public void test_20_Nmers_read_write() {
Log.debug("Test");
|
