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site_name: 'SnpEff & SnpSift'
site_description: 'SnpEff and SnpSift'
site_author: 'Pablo Cingolani'
copyright: 'Pablo Cingolani'
repo_name: 'SnpEff'
repo_url: 'https://github.com/pcingola/SnpEff'
edit_uri: ''
docs_dir: 'src/docs'
site_dir: 'site'
extra_css:
- 'stylesheets/extra.css'
theme:
name: material
features:
- navigation.tabs
- navigation.sections
- search.highlight
- search.suggest
- toc.integrate
- content.tabs.link
- content.code.annotate
- content.code.copy
palette:
scheme: slate
primary: default
# accent: indigo
markdown_extensions:
- admonition
- attr_list
- tables
- codehilite
- pymdownx.highlight
- pymdownx.superfences
extra:
social:
- icon: fontawesome/brands/linkedin
link: 'http://www.linkedin.com/in/pablocingolani'
- icon: fontawesome/brands/github-alt
link: 'https://github.com/pcingola/SnpEff'
nav:
- Home:
- Home: index.md
- Usage examples: examples.md
- License: license.md
- SnpEff:
- Introduction: snpeff/introduction.md
- Running SnpEff: snpeff/running.md
- Commands & command line options: snpeff/commandline.md
- Input & output files: snpeff/inputoutput.md
- Cancer samples: snpeff/cansersamples.md
- Additional annotations: snpeff/additionalann.md
- Output summary files: snpeff/outputsummary.md
- Troubleshooting: snpeff/troubleshooting.md
- Building databases: snpeff/build_db.md
- Build databses. GTF / GFF details: snpeff/build_db_gff_gtf.md
- Building databases. Regulatory and Non-coding: snpeff/build_reg.md
- Building databases. PDB and AlphaFold: snpeff/build_pdb.md
- Integration. GATK and Galaxy: snpeff/integration.md
- Commands and utilities: snpeff/commands.md
- Human Genomes: snpeff/human_genomes.md
- Frequently Asked Questions: snpeff/faq.md
- SnpSift:
- Introduction: snpsift/introduction.md
- SnpSift Filter: snpsift/filter.md
- SnpSift Annotate: snpsift/annotate.md
- SnpSift Annotate Mem: snpsift/annotate_mem.md
- SnpSift CaseControl: snpsift/casecontrol.md
- SnpSift Intervals: snpsift/intervals.md
- SnpSift Intervals Index: snpsift/intervalsindex.md
- SnpSift Join: snpsift/join.md
- SnpSift RmRefGen: snpsift/rmrefgen.md
- SnpSift TsTv: snpsift/tstv.md
- SnpSift Extract Fields: snpsift/extractfields.md
- SnpSift Variant Type: snpsift/varianttype.md
- SnpSift GWAS Catalog: snpsift/gwascatalog.md
- SnpSift dbNSFP: snpsift/dbnsfp.md
- SnpSift Split: snpsift/split.md
- SnpSift PhastCons: snpsift/phastcons.md
- SnpSift Concordance: snpsift/concordance.md
- SnpSift Private: snpsift/private.md
- SnpSift Vcf2Tped: snpsift/vcf2ped.md
- SnpSift Intersect: snpsift/intersect.md
- SnpSift RmInfo: snpsift/rminfo.md
- SnpSift GeneSets: snpsift/genesets.md
- SnpSift GT: snpsift/gt.md
- SnpSift VcfCheck: snpsift/vcfcheck.md
- Frequently asked questions: snpsift/faq.md
- 'Download & Install':
- Download and install: download.md
- 'Examples':
- Examples: examples.md
- About:
- About: about.md
- Help and Bugs: help.md
- In Memory: xiangyi_lu_donate.md
|
