package info (click to toggle)
snpeff 5.4.b%2Bdfsg-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 757,496 kB
  • sloc: java: 62,572; perl: 2,279; sh: 1,185; python: 744; xml: 507; makefile: 50

Folder: integration

d .. (parent)
d d rwxr-xr-x 144 apply
d d rwxr-xr-x 24 buildPdb
d d rwxr-xr-x 4,096 cancer
d d rwxr-xr-x 69 canonical
d d rwxr-xr-x 131 circularGenome
d d rwxr-xr-x 46 codingTag
d d rwxr-xr-x 36 config
d d rwxr-xr-x 78 cutsomIntervals
d d rwxr-xr-x 51 delEtc
d d rwxr-xr-x 31 dup
d d rwxr-xr-x 4,096 eff
d d rwxr-xr-x 51 embl
d d rwxr-xr-x 39 errors
d d rwxr-xr-x 34 exonFrame
d d rwxr-xr-x 122 filterTranscripts
d d rwxr-xr-x 4,096 gff3
d d rwxr-xr-x 4,096 gtf22
d d rwxr-xr-x 4,096 hgvs
d d rwxr-xr-x 53 hgvsDel
d d rwxr-xr-x 33 hgvsDnaDup
d d rwxr-xr-x 4,096 hgvsFrameShift
d d rwxr-xr-x 4,096 hgvsHard
d d rwxr-xr-x 4,096 hgvsIns
d d rwxr-xr-x 47 hgvsLarge
d d rwxr-xr-x 64 hgvsMnps
d d rwxr-xr-x 4,096 hgvsUpDownStream
d d rwxr-xr-x 39 insEtc
d d rwxr-xr-x 94 insVep
d d rwxr-xr-x 59 inv
d d rwxr-xr-x 146 largeDeletion
d d rwxr-xr-x 36 lof
d d rwxr-xr-x 33 markerSeq
d d rwxr-xr-x 48 missenseSilentRatio
d d rwxr-xr-x 4,096 mixedVariants
d d rwxr-xr-x 36 mnp
d d rwxr-xr-x 146 motif
d d rwxr-xr-x 4,096 nextProt
d d rwxr-xr-x 71 noChange
d d rwxr-xr-x 48 protein
d d rwxr-xr-x 112 proteinInteraction
d d rwxr-xr-x 31 rareAa
d d rwxr-xr-x 81 refSeq
d d rwxr-xr-x 43 regulation
d d rwxr-xr-x 4,096 sequenceOntology
d d rwxr-xr-x 120 snp
d d rwxr-xr-x 82 snpEff
d d rwxr-xr-x 4,096 snpEnsembl
d d rwxr-xr-x 46 spliceRegion
d d rwxr-xr-x 4,096 structural
d d rwxr-xr-x 30 tags
d d rwxr-xr-x 68 transcriptError
d d rwxr-xr-x 4,096 variant
d d rwxr-xr-x 133 vcfs
d d rwxr-xr-x 140 zzz
- - rw-r--r-- 8,491,092 integration_1.vcf.gz
- - rw-r--r-- 12,186 test_clinvar.vcf.gz
- - rw-r--r-- 11,835 test_dbSnp.vcf.gz
- - rw-r--r-- 55,277 test_gatk.eff.gatk.vcf
- - rw-r--r-- 2,092 test_gatk.eff.gatk.vcf.idx
- - rw-r--r-- 44,345 test_gatk.eff.vcf
- - rw-r--r-- 2,087 test_gatk.eff.vcf.idx
- - rw-r--r-- 39,119 test_gatk.vcf
- - rw-r--r-- 2,083 test_gatk.vcf.idx