File: create.sh

package info (click to toggle)
snpeff 5.4.b%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 757,500 kB
  • sloc: java: 62,572; perl: 2,279; sh: 1,184; python: 744; xml: 507; makefile: 48
file content (9 lines) | stat: -rwxr-xr-x 172 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
#!/bin/sh -e

zcat ORI/c_elegans.PRJNA13758.WS241.annotations.gff3.gz \
        | grep WormBase \
		| sed "s/Transcript://g" \
		| sed "s/Gene://g" \
        > genes.gff