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Description: Fix wrong function parameters in ungap tool
This missing parameter in a function call was likely missed as the ungap
tool is not built if simply 'make' is run.
Author: Sascha Steinbiss <sascha@steinbiss.name>
--- a/src/ungap.cpp
+++ b/src/ungap.cpp
@@ -258,9 +258,9 @@
ca.using_bins = true ;
}
*/
- ca.align_solexa_paired ( fastq_file , pair_length , fragment_length , variance ) ;
+ ca.align_solexa_paired ( genome_file, fastq_file , pair_length , fragment_length , variance ) ;
// ca.assemble_leftovers ( 2 ) ;
-
+
string fasta_output = name + ".fasta" ;
fstream filestr;
filestr.open ( fasta_output.c_str() , fstream::out ); //| fstream::app);
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