File: test03.vcf

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snpsift 5.1%2Bdfsg2-2
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parent folder | download | duplicates (2)
##fileformat=VCFv4.0
##fileDate=20110907
##source=CGA Tools v1.3 listvariants/testvariants
##reference=../../ref/build37.crr
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples with Fully Called Data">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP Membership">
##INFO=<ID=RSID,Number=A,Type=String,Description="dbSNP rs ids">
##INFO=<ID=STR,Number=1,Type=Float,Description="Strand Bias Pearson's Correlation">
##INFO=<ID=STZ,Number=1,Type=Float,Description="Strand Bias z-score">
##INFO=<ID=CBR,Number=1,Type=Float,Description="Cycle Bias Peason's correlation">
##INFO=<ID=CBZ,Number=1,Type=Float,Description="Cycle Bias z-score">
##INFO=<ID=CSR,Number=1,Type=Float,Description="Cycle-Strand Peason's Correlation">
##INFO=<ID=IOZ,Number=1,Type=Float,Description="Base quality inflation z-score">
##INFO=<ID=IOR,Number=1,Type=Float,Description="Ratio of base-quality inflation">
##INFO=<ID=AOZ,Number=1,Type=Float,Description="Alternate allele quality z-score">
##INFO=<ID=AOI,Number=1,Type=Float,Description="Alternate allele inflation score">
##INFO=<ID=MQ0,Number=1,Type=Float,Description="Fraction of bases with mapQ=0">
##INFO=<ID=MQ10,Number=1,Type=Float,Description="Fraction of bases with mapQ<=10">
##INFO=<ID=MQ20,Number=1,Type=Float,Description="Fraction of bases with mapQ<=20">
##INFO=<ID=MQ30,Number=1,Type=Float,Description="Fraction of bases with mapQ<=30">
##FILTER=<ID=s50,Description="Less than 50% of samples are fully called">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##SnpEffVersion="2.0.4 (build 2011-10-08), by Pablo Cingolani"
##SnpEffCmd="SnpEff eff -v -useLocalTemplate -stats /wsu/home/eq/eq83/eq8302/t2d2/t2d2.464.snpEff.html -i vcf -o vcf -onlyCoding -noSumm GRCh37.64.filtered /wsu/home/eq/eq83/eq8302/t2d2/T2DG.464var.SNPonly.vcf "
##INFO=<ID=EFF,Number=.,Type=String,Description="Predicted effects for this variant.Format: 'Effect ( Efefct_Impact | Functional_Class | Codon_Change | Amino_Acid_change | Gene_Name | Gene_BioType | Coding | Transcript | Exon [ | ERRORS | WARNINGS ] )' ">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
1	26996	.	A	G	0.0	SVM	NS=1;AF=1.000;AC=2;s50=0.00;LBS=113,398,10,15,360,784,24,40;OBS=1601,1022,10,3,15236,6550,32,6;STR=-0.060;STZ=-9.312;CBR=-0.051;CBZ=-7.996;QBR=0.086;QBZ=13.360;MBR=0.282;MSR=-0.034;MBZ=44.037;IOR=0.250;IOZ=-12.326;IOH=1.000;IOD=0.998;AOI=-2039.490;AOZ=-2027.165;ABE=0.500;ABZ=0.000;BCS=-102965.032;FIC=-nan;LQR=0.063;MQ0=0.000;MQ10=0.380;MQ20=0.562;MQ30=0.855;MENDEL=0;SVM=-1.5800163;AN=2;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.2|unprocessed_pseudogene|NON_CODING|ENST00000423562|),TRANSCRIPT(MODIFIER||||RP11-34P13.2|unprocessed_pseudogene|NON_CODING|ENST00000430492|),TRANSCRIPT(MODIFIER||||RP11-34P13.2|unprocessed_pseudogene|NON_CODING|ENST00000438504|),TRANSCRIPT(MODIFIER||||RP11-34P13.2|unprocessed_pseudogene|NON_CODING|ENST00000488147|),TRANSCRIPT(MODIFIER||||RP11-34P13.2|unprocessed_pseudogene|NON_CODING|ENST00000538476|),UPSTREAM(LOW||||RP11-34P13.2|unprocessed_pseudogene|NON_CODING|ENST00000541675|),UPSTREAM(LOW||||RP11-34P13.3|antisense|NON_CODING|ENST00000469289|),UPSTREAM(LOW||||RP11-34P13.3|antisense|NON_CODING|ENST00000473358|),UPSTREAM(LOW||||hsa-mir-1302-2|miRNA|NON_CODING|ENST00000408384|)
1	30860	rs142861722	G	C	0.0	SVM	NS=1;AF=1.000;AC=1;s50=0.00;LBS=48,18,386,206,143,194,35,60;OBS=11,17,1797,2398,1669,5340,6,18;STR=-0.199;STZ=-21.082;CBR=-0.051;CBZ=-5.349;QBR=-0.194;QBZ=-20.519;MBR=-0.400;MSR=0.164;MBZ=-42.304;IOR=0.418;IOZ=-8.426;IOH=1.000;IOD=0.995;AOI=-568.774;AOZ=-560.348;ABE=0.500;ABZ=0.000;BCS=16164.901;FIC=-nan;LQR=0.077;MQ0=0.000;MQ10=0.444;MQ20=0.686;MQ30=0.918;MENDEL=0;SVM=-1.4848445;AN=2;EFF=DOWNSTREAM(MODIFIER||||FAM138A|protein_coding|CODING|ENST00000417324|),DOWNSTREAM(MODIFIER||||FAM138A|protein_coding|CODING|ENST00000461467|),DOWNSTREAM(MODIFIER||||hsa-mir-1302-2|miRNA|NON_CODING|ENST00000408384|),TRANSCRIPT(MODIFIER||||RP11-34P13.3|antisense|NON_CODING|ENST00000469289|),TRANSCRIPT(MODIFIER||||RP11-34P13.3|antisense|NON_CODING|ENST00000473358|),UPSTREAM(LOW||||RP11-34P13.2|unprocessed_pseudogene|NON_CODING|ENST00000423562|),UPSTREAM(LOW||||RP11-34P13.2|unprocessed_pseudogene|NON_CODING|ENST00000430492|),UPSTREAM(LOW||||RP11-34P13.2|unprocessed_pseudogene|NON_CODING|ENST00000438504|),UPSTREAM(LOW||||RP11-34P13.2|unprocessed_pseudogene|NON_CODING|ENST00000488147|),UPSTREAM(LOW||||RP11-34P13.2|unprocessed_pseudogene|NON_CODING|ENST00000538476|)
1	38232	.	A	G	0.0	SVM	NS=61;AF=1.000;AC=122;s50=0.13;LBS=90,104,2,4,56,252,4,6;OBS=56,47,0,1,1439,992,0,0;STR=-0.020;STZ=-0.987;CBR=-0.077;CBZ=-3.859;QBR=0.125;QBZ=6.286;MBR=-0.000;MSR=-0.105;MBZ=-0.005;IOR=0.052;IOZ=-4.274;IOH=1.000;IOD=1.000;AOI=-663.779;AOZ=-659.505;ABE=0.500;ABZ=0.000;BCS=-12266.252;FIC=-nan;LQR=0.165;MQ0=0.000;MQ10=0.379;MQ20=0.624;MQ30=0.818;MENDEL=0;SVM=-2.5225977;AN=122;EFF=UPSTREAM(LOW||||FAM138A|protein_coding|CODING|ENST00000417324|),UPSTREAM(LOW||||FAM138A|protein_coding|CODING|ENST00000461467|)
1	38907	.	C	T	0.0	SVM	NS=16;AF=0.529;AC=16;s50=0.04;LBS=14,24,308,1004,25,25,282,1089;OBS=5,1,3080,2011,8,1,3431,2522;STR=0.029;STZ=3.049;CBR=0.009;CBZ=0.984;QBR=-0.112;QBZ=-11.782;MBR=-0.328;MSR=-0.034;MBZ=-34.477;IOR=0.180;IOZ=-8.244;IOH=0.002;IOD=0.000;AOI=-839.228;AOZ=-830.984;ABE=0.593;ABZ=18.379;BCS=-26346.876;FIC=0.122;LQR=0.195;MQ0=0.000;MQ10=0.312;MQ20=0.563;MQ30=0.924;MENDEL=0;SVM=-1.8404388;AN=32;EFF=UPSTREAM(LOW||||FAM138A|protein_coding|CODING|ENST00000417324|),UPSTREAM(LOW||||FAM138A|protein_coding|CODING|ENST00000461467|)
1	41218	.	T	A	0.0	SVM	NS=9;AF=0.333;AC=6;s50=0.02;LBS=264,493,27,12,18,11,69,60;OBS=8869,19764,7,5,12,1,4832,13576;STR=-0.051;STZ=-11.007;CBR=0.010;CBZ=2.142;QBR=-0.080;QBZ=-17.262;MBR=0.193;MSR=-0.027;MBZ=41.755;IOR=0.124;IOZ=-13.309;IOH=0.000;IOD=-0.000;AOI=-2492.527;AOZ=-2479.218;ABE=0.395;ABZ=-60.872;BCS=-133294.563;FIC=-1.205;LQR=0.018;MQ0=0.000;MQ10=0.875;MQ20=0.911;MQ30=0.974;MENDEL=0;SVM=-1.5012595;AN=18;EFF=INTERGENIC(LOW||||||||)
1	41256	.	C	T	0.0	SVM	NS=7;AF=0.429;AC=6;s50=0.01;LBS=3,7,40,46,2,1,98,212;OBS=0,0,3922,9068,0,0,7906,16731;STR=-0.019;STZ=-3.768;CBR=0.054;CBZ=10.389;QBR=0.030;QBZ=5.729;MBR=0.179;MSR=0.002;MBZ=34.793;IOR=0.000;IOZ=-11.304;IOH=0.000;IOD=0.000;AOI=-2537.340;AOZ=-2526.036;ABE=0.354;ABZ=-74.152;BCS=-118580.343;FIC=-0.976;LQR=0.010;MQ0=0.000;MQ10=0.890;MQ20=0.924;MQ30=0.976;MENDEL=0;SVM=-1.4390491;AN=14;EFF=INTERGENIC(LOW||||||||)
1	41981	.	A	G	0.0	SVM	NS=300;AF=1.000;AC=600;s50=0.64;LBS=93,374,6,23,100,220,4,33;OBS=42,62,0,0,1906,1312,1,2;STR=-0.067;STZ=-3.838;CBR=-0.032;CBZ=-1.844;QBR=0.122;QBZ=7.032;MBR=-0.077;MSR=-0.042;MBZ=-4.432;IOR=0.106;IOZ=-5.029;IOH=1.000;IOD=0.999;AOI=-745.227;AOZ=-740.198;ABE=0.500;ABZ=0.000;BCS=-16297.888;FIC=-nan;LQR=0.192;MQ0=0.000;MQ10=0.411;MQ20=0.598;MQ30=0.921;MENDEL=0;SVM=-1.5532857;AN=600;EFF=INTERGENIC(LOW||||||||)
1	42577	.	C	T	0.0	SVM	NS=6;AF=0.167;AC=2;s50=0.01;LBS=6,6,47,19,6,2,146,84;OBS=1,8,4787,5870,0,4,12256,14145;STR=-0.014;STZ=-2.628;CBR=-0.017;CBZ=-3.195;QBR=0.056;QBZ=10.717;MBR=-0.029;MSR=0.010;MBZ=-5.600;IOR=0.108;IOZ=-10.353;IOH=0.001;IOD=0.000;AOI=-2940.794;AOZ=-2930.441;ABE=0.301;ABZ=-99.104;BCS=-131348.706;FIC=-2.404;LQR=0.008;MQ0=0.000;MQ10=0.965;MQ20=0.978;MQ30=0.991;MENDEL=0;SVM=-1.8998247;AN=12;EFF=INTERGENIC(LOW||||||||)
1	43586	.	C	A	0.0	SVM	NS=7;AF=0.429;AC=6;s50=0.01;LBS=82,32,179,52,3,0,3,1;OBS=15822,9666,6757,5004,0,2,0,1;STR=-0.044;STZ=-8.490;CBR=-0.002;CBZ=-0.386;QBR=-0.014;QBZ=-2.683;MBR=-0.187;MSR=-0.001;MBZ=-36.119;IOR=0.019;IOZ=-12.304;IOH=0.000;IOD=-0.000;AOI=-2411.298;AOZ=-2398.994;ABE=0.312;ABZ=-92.967;BCS=-119686.182;FIC=-0.868;LQR=0.009;MQ0=0.000;MQ10=0.947;MQ20=0.959;MQ30=0.989;MENDEL=0;SVM=-1.6620194;AN=14;EFF=INTERGENIC(LOW||||||||)
1	44336	.	C	T	0.0	SVM	NS=12;AF=0.250;AC=6;s50=0.02;LBS=15,17,96,47,23,2,215,229;OBS=5,0,9005,4048,4,0,12318,5113;STR=-0.018;STZ=-3.165;CBR=0.038;CBZ=6.660;QBR=-0.108;QBZ=-18.908;MBR=-0.020;MSR=-0.031;MBZ=-3.451;IOR=0.076;IOZ=-10.438;IOH=0.000;IOD=-0.000;AOI=-1940.106;AOZ=-1929.668;ABE=0.423;ABZ=-35.131;BCS=-79654.474;FIC=-1.504;LQR=0.019;MQ0=0.000;MQ10=0.958;MQ20=0.971;MQ30=0.986;MENDEL=0;SVM=-2.5045859;AN=24;EFF=INTERGENIC(LOW||||||||)
1	45093	.	C	T	0.0	SVM	NS=8;AF=0.125;AC=2;s50=0.02;LBS=3,0,39,15,0,4,55,28;OBS=1,0,4917,2093,0,0,8230,4664;STR=0.064;STZ=8.984;CBR=-0.074;CBZ=-10.424;QBR=-0.073;QBZ=-10.341;MBR=-0.053;MSR=-0.036;MBZ=-7.476;IOR=0.014;IOZ=-8.333;IOH=0.000;IOD=0.000;AOI=-1799.506;AOZ=-1791.173;ABE=0.363;ABZ=-50.176;BCS=-60405.486;FIC=-3.177;LQR=0.007;MQ0=0.000;MQ10=0.951;MQ20=0.966;MQ30=0.986;MENDEL=0;SVM=-2.1649157;AN=16;EFF=INTERGENIC(LOW||||||||)
1	45891	.	T	A	0.0	SVM	NS=6;AF=0.167;AC=2;s50=0.01;LBS=29,23,1,0,1,2,84,51;OBS=7932,4316,1,0,1,0,3236,1724;STR=0.005;STZ=0.596;CBR=0.027;CBZ=3.519;QBR=0.188;QBZ=24.654;MBR=-0.152;MSR=-0.048;MBZ=-19.910;IOR=0.030;IOZ=-8.029;IOH=0.000;IOD=0.000;AOI=-1773.615;AOZ=-1765.587;ABE=0.307;ABZ=-60.638;BCS=-59825.657;FIC=-2.114;LQR=0.011;MQ0=0.000;MQ10=0.947;MQ20=0.964;MQ30=0.988;MENDEL=0;SVM=-2.3017636;AN=12;EFF=INTERGENIC(LOW||||||||)
1	46095	.	C	G	0.0	SVM	NS=10;AF=0.100;AC=2;s50=0.02;LBS=1,1,18,33,24,23,0,0;OBS=4,1,3586,2592,8675,4722,2,0;STR=-0.064;STZ=-9.018;CBR=0.001;CBZ=0.076;QBR=0.016;QBZ=2.263;MBR=-0.110;MSR=0.004;MBZ=-15.436;IOR=0.099;IOZ=-7.962;IOH=0.001;IOD=0.001;AOI=-1949.632;AOZ=-1941.669;ABE=0.331;ABZ=-56.483;BCS=-65048.702;FIC=-4.052;LQR=0.005;MQ0=0.000;MQ10=0.932;MQ20=0.954;MQ30=0.989;MENDEL=0;SVM=-2.2252615;AN=20;EFF=INTERGENIC(LOW||||||||)
1	46670	.	A	G	0.0	SVM	NS=284;AF=0.484;AC=277;s50=0.61;LBS=90,126,3,1,29,62,2,5;OBS=2376,3636,1,1,497,794,1,0;STR=0.008;STZ=0.678;CBR=0.029;CBZ=2.439;QBR=-0.120;QBZ=-10.238;MBR=-0.364;MSR=-0.018;MBZ=-31.066;IOR=0.067;IOZ=-6.451;IOH=0.001;IOD=0.001;AOI=-237.908;AOZ=-231.457;ABE=0.669;ABZ=22.077;BCS=-3112.577;FIC=-0.004;LQR=0.040;MQ0=0.000;MQ10=0.153;MQ20=0.321;MQ30=0.899;MENDEL=2;SVM=-0.71229712;AN=568;EFF=INTERGENIC(LOW||||||||)
1	47108	.	G	C	0.0	SVM	NS=274;AF=0.554;AC=306;s50=0.58;LBS=0,0,8,9,35,81,0,0;OBS=1,0,188,184,1738,2466,2,0;STR=-0.051;STZ=-3.446;CBR=0.045;CBZ=3.078;QBR=-0.046;QBZ=-3.141;MBR=-0.193;MSR=0.042;MBZ=-13.062;IOR=0.120;IOZ=-4.702;IOH=0.001;IOD=-0.000;AOI=-95.765;AOZ=-91.063;ABE=0.680;ABZ=12.483;BCS=-442.743;FIC=0.490;LQR=0.028;MQ0=0.000;MQ10=0.082;MQ20=0.222;MQ30=0.903;MENDEL=2;SVM=-0.32039278;AN=548;EFF=INTERGENIC(LOW||||||||)
1	47292	.	T	G	0.0	SVM	NS=329;AF=0.525;AC=351;s50=0.72;LBS=3,1,0,1,15,12,350,79;OBS=0,2,0,1,2103,1440,4216,4515;STR=-0.100;STZ=-11.116;CBR=0.049;CBZ=5.405;QBR=0.218;QBZ=24.155;MBR=-0.707;MSR=0.109;MBZ=-78.338;IOR=0.049;IOZ=-7.601;IOH=0.000;IOD=-0.000;AOI=-547.037;AOZ=-539.435;ABE=0.738;ABZ=50.581;BCS=-13696.809;FIC=-0.092;LQR=0.036;MQ0=0.000;MQ10=0.283;MQ20=0.422;MQ30=0.928;MENDEL=3;SVM=-1.3812594;AN=658;EFF=INTERGENIC(LOW||||||||)
1	48171	.	A	G	0.0	SVM	NS=260;AF=0.088;AC=46;s50=0.54;LBS=434,203,4,3,45,14,12,6;OBS=5645,5472,2,0,3690,3499,1,1;STR=-0.005;STZ=-0.727;CBR=0.019;CBZ=2.590;QBR=0.224;QBZ=30.321;MBR=-0.457;MSR=0.006;MBZ=-61.844;IOR=0.046;IOZ=-9.093;IOH=0.000;IOD=0.000;AOI=-924.363;AOZ=-915.270;ABE=0.426;ABZ=-20.521;BCS=-33181.826;FIC=-1.100;LQR=0.037;MQ0=0.000;MQ10=0.712;MQ20=0.767;MQ30=0.960;MENDEL=1;SVM=-1.6199722;AN=520;EFF=INTERGENIC(LOW||||||||)
1	48183	rs149278968	C	A	0.0	SVM	NS=291;AF=0.046;AC=26;s50=0.62;LBS=76,86,344,175,4,2,9,4;OBS=1914,1571,5581,5971,1,0,1,0;STR=-0.056;STZ=-6.838;CBR=0.035;CBZ=4.342;QBR=0.065;QBZ=7.969;MBR=-0.269;MSR=0.001;MBZ=-32.930;IOR=0.027;IOZ=-8.476;IOH=0.000;IOD=-0.000;AOI=-485.025;AOZ=-476.549;ABE=0.536;ABZ=8.195;BCS=-14227.590;FIC=-1.798;LQR=0.043;MQ0=0.000;MQ10=0.647;MQ20=0.715;MQ30=0.952;MENDEL=0;SVM=-2.1457758;AN=582;EFF=INTERGENIC(LOW||||||||)
1	48937	.	T	C	0.0	SVM	NS=327;AF=0.004;AC=2;s50=0.70;LBS=3,15,9,17,4,12,648,230;OBS=0,0,2030,949,6,6,8661,5093;STR=-0.041;STZ=-5.324;CBR=0.018;CBZ=2.317;QBR=0.227;QBZ=29.376;MBR=-0.203;MSR=-0.016;MBZ=-26.289;IOR=0.111;IOZ=-9.794;IOH=0.000;IOD=-0.000;AOI=-360.569;AOZ=-350.775;ABE=0.569;ABZ=15.777;BCS=-12234.797;FIC=-23.948;LQR=0.051;MQ0=0.000;MQ10=0.696;MQ20=0.748;MQ30=0.924;MENDEL=0;SVM=-1.9017194;AN=654;EFF=INTERGENIC(LOW||||||||)
1	48976	.	A	G	0.0	SVM	NS=379;AF=0.001;AC=1;s50=0.81;LBS=293,58,10,1,16,3,5,0;OBS=6699,5659,0,0,1189,736,1,0;STR=-0.052;STZ=-6.200;CBR=0.033;CBZ=3.941;QBR=0.130;QBZ=15.497;MBR=-0.216;MSR=0.007;MBZ=-25.765;IOR=0.015;IOZ=-8.243;IOH=0.000;IOD=-0.000;AOI=-279.279;AOZ=-271.036;ABE=0.578;ABZ=14.479;BCS=-7869.858;FIC=-53.924;LQR=0.025;MQ0=0.000;MQ10=0.640;MQ20=0.704;MQ30=0.909;MENDEL=0;SVM=-1.7483903;AN=758;EFF=INTERGENIC(LOW||||||||)
1	48979	.	A	G	0.0	SVM	NS=395;AF=0.002;AC=2;s50=0.85;LBS=576,162,19,7,50,6,19,0;OBS=6195,6279,10,0,50,45,32,0;STR=-0.005;STZ=-0.574;CBR=0.015;CBZ=1.690;QBR=-0.055;QBZ=-6.217;MBR=0.095;MSR=0.002;MBZ=10.656;IOR=0.389;IOZ=-7.997;IOH=0.000;IOD=-0.003;AOI=-18.345;AOZ=-10.348;ABE=0.690;ABZ=8.796;BCS=-287.681;FIC=-1.079;LQR=0.059;MQ0=0.000;MQ10=0.659;MQ20=0.722;MQ30=0.920;MENDEL=0;SVM=-1.1923174;AN=790;EFF=INTERGENIC(LOW||||||||)
1	49148	.	A	T	0.0	SVM	NS=419;AF=0.002;AC=2;s50=0.90;LBS=446,526,15,31,20,38,27,33;OBS=16247,9213,18,7,38,0,913,420;STR=-0.021;STZ=-3.461;CBR=0.038;CBZ=6.275;QBR=0.054;QBZ=8.893;MBR=-0.190;MSR=0.012;MBZ=-31.083;IOR=0.319;IOZ=-11.472;IOH=0.001;IOD=-0.002;AOI=-139.929;AOZ=-128.457;ABE=0.635;ABZ=19.821;BCS=-4827.104;FIC=-13.163;LQR=0.037;MQ0=0.000;MQ10=0.467;MQ20=0.579;MQ30=0.876;MENDEL=0;SVM=-1.1732438;AN=838;EFF=INTERGENIC(LOW||||||||)
1	49243	.	G	A	0.0	SVM	NS=88;AF=0.057;AC=7;s50=0.20;LBS=37,52,14,9,276,369,9,9;OBS=11462,7135,0,0,10028,6530,1,4;STZ=-0.011;STZ=-2.056;CBZ=0.044;CBZ=8.300;QBZ=0.172;QBZ=32.297;MBR=-0.304;MSR=0.072;MBZ=-56.916;IOZ=0.035;IOH=-11.685;IOD=0.000;IOD=-0.000;AOZ=-1853.750;AOZ=-1842.065;ABZ=0.431;ABZ=-32.220;BCS=-85942.650;FIC=-6.046;LQR=0.020;MQ10=0.000;MQ10=0.814;MQ20=0.852;MQ30=0.962;MENDEL=0;SVM=-1.4782786;AN=176;EFF=INTERGENIC(LOW||||||||)
1	49272	rs148151010	G	A	0.0	SVM	NS=195;AF=0.751;AC=293;s50=0.42;LBS=339,299,31,5,487,186,24,14;OBS=10053,7674,6,4,5180,4386,7,2;STR=-0.025;STZ=-4.063;CBR=-0.044;CBZ=-7.235;QBR=0.142;QBZ=23.385;MBR=-0.815;MSR=0.030;MBZ=-134.636;IOR=0.119;IOZ=-11.839;IOH=0.000;IOD=-0.000;AOI=-1738.495;AOZ=-1726.656;ABE=0.443;ABZ=-21.466;BCS=-85590.475;FIC=-0.597;LQR=0.046;MQ0=0.000;MQ10=0.632;MQ20=0.686;MQ30=0.888;MENDEL=2;SVM=-1.1790275;AN=390;EFF=INTERGENIC(LOW||||||||)
1	49291	.	C	T	0.0	SVM	NS=175;AF=0.484;AC=152;s50=0.28;LBS=10,18,285,308,5,18,403,194;OBS=0,4,11182,8753,1,4,10613,8634;STR=0.010;STZ=1.895;CBR=0.003;CBZ=0.602;QBR=0.027;QBZ=5.375;MBR=-0.238;MSR=-0.023;MBZ=-47.133;IOR=0.045;IOZ=-13.779;IOH=0.000;IOD=-0.000;AOI=-1631.940;AOZ=-1618.161;ABE=0.416;ABZ=-40.380;BCS=-85626.866;FIC=-0.378;LQR=0.029;MQ0=0.000;MQ10=0.718;MQ20=0.761;MQ30=0.922;MENDEL=2;SVM=-1.5141613;AN=350;EFF=INTERGENIC(LOW||||||||)
1	49298	rs144000582	T	C	0.0	SVM	NS=265;AF=0.052;AC=27;s50=0.57;LBS=11,34,60,220,15,53,848,701;OBS=2,2,3983,2299,0,3,15499,9870;STR=-0.019;STZ=-3.366;CBR=-0.051;CBZ=-9.003;QBR=0.107;QBZ=19.089;MBR=0.682;MSR=-0.018;MBZ=121.253;IOR=0.040;IOZ=-13.068;IOH=0.000;IOD=-0.000;AOI=-570.396;AOZ=-557.328;ABE=0.679;ABZ=68.751;BCS=-22033.244;FIC=-3.747;LQR=0.055;MQ0=0.000;MQ10=0.664;MQ20=0.717;MQ30=0.896;MENDEL=0;SVM=-0.47392975;AN=530;EFF=INTERGENIC(LOW||||||||)
1	49342	.	G	T	0.0	SVM	NS=320;AF=0.030;AC=20;s50=0.69;LBS=8,48,3,2,410,290,204,86;OBS=1,0,0,3,6241,2164,4605,1761;STR=0.021;STZ=2.611;CBR=-0.106;CBZ=-12.825;QBR=0.002;QBZ=0.274;MBR=-0.216;MSR=-0.022;MBZ=-26.278;IOR=0.049;IOZ=-8.813;IOH=0.000;IOD=-0.000;AOI=-845.710;AOZ=-836.897;ABE=0.486;ABZ=-3.063;BCS=-26467.286;FIC=-4.240;LQR=0.063;MQ0=0.000;MQ10=0.915;MQ20=0.933;MQ30=0.982;MENDEL=3;SVM=-2.2254642;AN=640;EFF=INTERGENIC(LOW||||||||)
1	49363	.	C	T	0.0	SVM	NS=232;AF=0.045;AC=22;s50=0.50;LBS=1,14,246,181,1,4,123,139;OBS=0,2,6205,2535,0,2,8106,3129;STR=-0.013;STZ=-1.796;CBR=-0.050;CBZ=-7.091;QBR=0.077;QBZ=10.850;MBR=-0.222;MSR=-0.039;MBZ=-31.308;IOR=0.035;IOZ=-10.519;IOH=0.000;IOD=0.000;AOI=-1250.042;AOZ=-1239.523;ABE=0.430;ABZ=-21.790;BCS=-49212.888;FIC=-4.106;LQR=0.033;MQ0=0.000;MQ10=0.930;MQ20=0.947;MQ30=0.988;MENDEL=2;SVM=-1.9298534;AN=464;EFF=INTERGENIC(LOW||||||||)
1	49404	.	C	T	0.0	SVM	NS=136;AF=0.059;AC=16;s50=0.30;LBS=379,111,214,46,1,2,69,46;OBS=3084,1766,7024,4378,0,0,3942,2509;STR=0.005;STZ=0.656;CBR=-0.018;CBZ=-2.420;QBR=-0.075;QBZ=-9.975;MBR=-0.214;MSR=-0.016;MBZ=-28.603;IOR=0.989;IOZ=-4.796;IOH=0.085;IOD=-0.186;AOI=-429.948;AOZ=-425.151;ABE=0.407;ABZ=-22.126;BCS=-53213.945;FIC=-1.891;LQR=0.021;MQ0=0.000;MQ10=0.914;MQ20=0.984;MQ30=1.227;MENDEL=1;SVM=-2.2671397;AN=272;EFF=INTERGENIC(LOW||||||||)
1	49427	.	C	T	0.0	SVM	NS=240;AF=0.034;AC=16;s50=0.52;LBS=4,1,84,68,5,6,102,38;OBS=0,3,10734,6561,3,1,5360,3314;STR=0.003;STZ=0.424;CBR=0.025;CBZ=3.963;QBR=-0.078;QBZ=-12.512;MBR=-0.378;MSR=-0.060;MBZ=-60.903;IOR=0.060;IOZ=-10.436;IOH=0.000;IOD=-0.000;AOI=-971.382;AOZ=-960.947;ABE=0.500;ABZ=-0.014;BCS=-36521.066;FIC=-4.936;LQR=0.011;MQ0=0.000;MQ10=0.731;MQ20=0.784;MQ30=0.962;MENDEL=1;SVM=-2.0207021;AN=480;EFF=INTERGENIC(LOW||||||||)
1	51459	.	G	A	0.0	SVM	NS=256;AF=0.147;AC=71;s50=0.49;LBS=8,64,7,12,95,245,3,32;OBS=4011,2473,0,2,4641,2620,3,5;STR=0.021;STZ=2.492;CBR=-0.018;CBZ=-2.138;QBR=0.157;QBZ=18.452;MBR=-0.473;MSR=0.106;MBZ=-55.472;IOR=0.146;IOZ=-7.639;IOH=0.001;IOD=-0.000;AOI=-985.819;AOZ=-978.180;ABE=0.415;ABZ=-19.983;BCS=-30447.476;FIC=-0.649;LQR=0.029;MQ0=0.000;MQ10=0.693;MQ20=0.738;MQ30=0.873;MENDEL=0;SVM=-1.6086574;AN=512;EFF=INTERGENIC(LOW||||||||)
1	51476	.	T	C	0.0	SVM	NS=219;AF=0.319;AC=141;s50=0.46;LBS=31,2,271,180,23,11,377,159;OBS=2,2,3688,3256,0,1,3568,3929;STR=-0.055;STZ=-6.626;CBR=0.007;CBZ=0.886;QBR=0.053;QBZ=6.325;MBR=-0.803;MSR=0.054;MBZ=-96.548;IOR=0.059;IOZ=-8.952;IOH=0.000;IOD=0.000;AOI=-907.634;AOZ=-898.683;ABE=0.547;ABZ=8.360;BCS=-32963.963;FIC=0.158;LQR=0.064;MQ0=0.000;MQ10=0.492;MQ20=0.553;MQ30=0.816;MENDEL=3;SVM=-1.5967039;AN=438;EFF=INTERGENIC(LOW||||||||)
1	51479	rs116400033	T	A	0.0	SVM	NS=233;AF=0.023;AC=11;s50=0.50;LBS=76,55,14,0,4,6,318,96;OBS=856,910,1,2,0,1,6326,7010;STR=-0.007;STZ=-0.820;CBR=0.007;CBZ=0.829;QBR=-0.083;QBZ=-10.182;MBR=0.508;MSR=0.025;MBZ=62.468;IOR=0.052;IOZ=-8.580;IOH=0.000;IOD=-0.000;AOI=-246.735;AOZ=-238.154;ABE=0.593;ABZ=16.951;BCS=-6405.825;FIC=-2.809;LQR=0.035;MQ0=0.000;MQ10=0.542;MQ20=0.607;MQ30=0.825;MENDEL=0;SVM=-0.68862314;AN=466;EFF=INTERGENIC(LOW||||||||)
1	51499	.	G	A	0.0	SVM	NS=317;AF=0.042;AC=26;s50=0.64;LBS=6,27,0,3,31,95,0,6;OBS=1890,3064,0,3,4538,5319,0,3;STR=0.075;STZ=9.136;CBR=0.027;CBZ=3.269;QBR=0.036;QBZ=4.413;MBR=-0.341;MSR=-0.037;MBZ=-41.480;IOR=0.103;IOZ=-7.233;IOH=0.000;IOD=0.000;AOI=-797.003;AOZ=-789.770;ABE=0.514;ABZ=3.418;BCS=-21684.090;FIC=-2.993;LQR=0.011;MQ0=0.000;MQ10=0.745;MQ20=0.789;MQ30=0.924;MENDEL=1;SVM=-1.6866451;AN=634;EFF=INTERGENIC(LOW||||||||)
1	51620	.	A	G	0.0	SVM	NS=149;AF=0.006;AC=2;s50=0.33;LBS=120,50,31,1,182,98,8,8;OBS=1986,1711,8,2,1648,2311,2,0;STR=0.121;STZ=10.585;CBR=-0.096;CBZ=-8.410;QBR=-0.121;QBZ=-10.581;MBR=0.515;MSR=0.098;MBZ=45.084;IOR=0.220;IOZ=-6.511;IOH=0.001;IOD=-0.000;AOI=-704.411;AOZ=-697.900;ABE=0.441;ABZ=-12.760;BCS=-15736.281;FIC=-53.641;LQR=0.056;MQ0=0.000;MQ10=0.348;MQ20=0.460;MQ30=0.706;MENDEL=0;SVM=-0.84540255;AN=298;EFF=INTERGENIC(LOW||||||||)
1	51628	.	A	C	0.0	SVM	NS=143;AF=0.003;AC=1;s50=0.31;LBS=179,124,137,179,18,13,3,11;OBS=1714,1382,2015,1941,10,2,2,5;STR=0.044;STZ=3.694;CBR=-0.081;CBZ=-6.830;QBR=-0.062;QBZ=-5.247;MBR=0.529;MSR=0.089;MBZ=44.384;IOR=0.296;IOZ=-6.685;IOH=0.003;IOD=-0.000;AOI=-680.730;AOZ=-674.044;ABE=0.397;ABZ=-21.018;BCS=-15473.110;FIC=-107.714;LQR=0.081;MQ0=0.000;MQ10=0.325;MQ20=0.440;MQ30=0.701;MENDEL=0;SVM=-1.0189885;AN=286;EFF=INTERGENIC(LOW||||||||)
1	51673	rs141042612	T	C	0.0	SVM	NS=244;AF=0.375;AC=184;s50=0.52;LBS=0,0,31,10,2,3,142,237;OBS=1,2,540,729,0,0,1778,1777;STR=0.066;STZ=4.564;CBR=-0.024;CBZ=-1.700;QBR=0.207;QBZ=14.366;MBR=-0.500;MSR=-0.057;MBZ=-34.704;IOR=0.088;IOZ=-5.590;IOH=0.000;IOD=-0.000;AOI=-267.700;AOZ=-262.110;ABE=0.703;ABZ=24.682;BCS=-4415.906;FIC=0.068;LQR=0.080;MQ0=0.000;MQ10=0.247;MQ20=0.409;MQ30=0.865;MENDEL=3;SVM=-1.6339378;AN=488;EFF=INTERGENIC(LOW||||||||)
1	51802	.	C	T	0.0	SVM	NS=50;AF=0.059;AC=6;s50=0.10;LBS=19,20,187,367,5,34,146,177;OBS=1,2,4167,3979,2,3,1898,1709;STR=-0.014;STZ=-1.466;CBR=-0.028;CBZ=-3.082;QBR=-0.077;QBZ=-8.382;MBR=-0.093;MSR=0.031;MBZ=-10.105;IOR=0.110;IOZ=-8.041;IOH=0.001;IOD=-0.000;AOI=-526.052;AOZ=-518.011;ABE=0.522;ABZ=4.933;BCS=-14250.866;FIC=-3.196;LQR=0.069;MQ0=0.000;MQ10=0.636;MQ20=0.708;MQ30=0.898;MENDEL=0;SVM=-3.884035;AN=100;EFF=INTERGENIC(LOW||||||||)
1	51803	rs62637812	T	C	0.0	SVM	NS=60;AF=0.067;AC=8;s50=0.12;LBS=22,27,142,102,13,31,393,408;OBS=4,4,953,1046,3,10,4943,4734;STZ=0.026;STZ=2.772;CBZ=-0.004;CBZ=-0.484;QBZ=-0.019;QBZ=-2.090;MBR=0.512;MSR=0.028;MBZ=55.372;IOZ=0.224;IOH=-8.520;IOD=0.001;IOD=-0.001;AOZ=-276.922;AOZ=-268.402;ABZ=0.641;ABZ=27.140;BCS=-6545.301;FIC=-2.563;LQR=0.082;MQ10=0.000;MQ10=0.632;MQ20=0.705;MQ30=0.897;MENDEL=0;SVM=-1.9211196;AN=120;EFF=INTERGENIC(LOW||||||||)
1	51806	.	A	G	0.0	SVM	NS=71;AF=0.027;AC=4;s50=0.15;LBS=349,394,37,10,71,110,25,31;OBS=4084,4188,7,2,1324,1019,2,1;STR=-0.059;STZ=-6.099;CBR=-0.038;CBZ=-3.941;QBR=0.011;QBZ=1.182;MBR=-0.279;MSR=0.046;MBZ=-28.701;IOR=0.136;IOZ=-8.746;IOH=0.001;IOD=-0.000;AOI=-317.502;AOZ=-308.756;ABE=0.522;ABZ=3.924;BCS=-8954.096;FIC=-4.808;LQR=0.080;MQ0=0.000;MQ10=0.648;MQ20=0.714;MQ30=0.897;MENDEL=0;SVM=-3.0599943;AN=142;EFF=INTERGENIC(LOW||||||||)
1	51898	rs76402894	C	A	0.0	SVM	NS=164;AF=0.427;AC=141;s50=0.33;LBS=156,132,140,44,2,0,7,0;OBS=4694,4957,2768,3010,2,2,1,2;STZ=-0.007;STZ=-0.880;CBZ=-0.019;CBZ=-2.390;QBZ=0.016;QBZ=1.932;MBR=-0.739;MSR=0.004;MBZ=-91.738;IOZ=0.084;IOH=-8.754;IOD=0.001;IOD=0.000;AOZ=-1284.383;AOZ=-1275.629;ABZ=0.476;ABZ=-5.408;BCS=-45824.917;FIC=-0.048;LQR=0.030;MQ10=0.000;MQ10=0.654;MQ20=0.745;MQ30=0.860;MENDEL=4;SVM=-1.8730251;AN=328;EFF=INTERGENIC(LOW||||||||)
1	51928	rs78732933	G	A	0.0	SVM	NS=180;AF=0.445;AC=158;s50=0.36;LBS=94,164,9,7,71,129,5,11;OBS=4929,4180,0,2,2648,2709,0,2;STR=-0.045;STZ=-5.443;CBR=0.014;CBZ=1.719;QBR=0.052;QBZ=6.212;MBR=-0.775;MSR=0.026;MBZ=-93.271;IOR=0.054;IOZ=-8.396;IOH=0.000;IOD=-0.000;AOI=-1263.373;AOZ=-1254.976;ABE=0.485;ABZ=-3.312;BCS=-43987.910;FIC=0.009;LQR=0.031;MQ0=0.000;MQ10=0.558;MQ20=0.622;MQ30=0.782;MENDEL=6;SVM=-1.3644049;AN=360;EFF=INTERGENIC(LOW||||||||)
1	51936	.	G	T	0.0	SVM	NS=299;AF=0.005;AC=3;s50=0.64;LBS=3,17,5,4,328,482,15,28;OBS=0,4,0,1,7786,7110,226,258;STR=0.019;STZ=2.415;CBR=0.016;CBZ=1.994;QBR=-0.024;QBZ=-2.973;MBR=-0.076;MSR=0.041;MBZ=-9.480;IOR=0.055;IOZ=-9.282;IOH=0.001;IOD=0.001;AOI=-69.420;AOZ=-60.138;ABE=0.597;ABZ=8.377;BCS=-1655.412;FIC=-2.985;LQR=0.053;MQ0=0.000;MQ10=0.608;MQ20=0.668;MQ30=0.842;MENDEL=0;SVM=-1.8245339;AN=598;EFF=INTERGENIC(LOW||||||||)
1	51941	.	A	G	0.0	SVM	NS=299;AF=0.003;AC=2;s50=0.65;LBS=195,330,11,2,16,11,8,7;OBS=7915,7031,3,0,194,237,1,2;STR=0.026;STZ=3.256;CBR=0.027;CBZ=3.357;QBR=0.014;QBZ=1.732;MBR=-0.104;MSR=0.012;MBZ=-12.868;IOR=0.072;IOZ=-8.792;IOH=0.001;IOD=0.000;AOI=-65.080;AOZ=-56.288;ABE=0.575;ABZ=5.993;BCS=-1572.532;FIC=-3.551;LQR=0.035;MQ0=0.000;MQ10=0.617;MQ20=0.674;MQ30=0.845;MENDEL=0;SVM=-1.9828317;AN=598;EFF=INTERGENIC(LOW||||||||)
1	51951	.	T	C	0.0	SVM	NS=265;AF=0.135;AC=70;s50=0.54;LBS=4,13,29,40,2,5,161,134;OBS=3,2,3061,3424,0,1,3539,4223;STR=-0.016;STZ=-1.916;CBR=0.028;CBZ=3.327;QBR=0.181;QBZ=21.608;MBR=-0.649;MSR=-0.021;MBZ=-77.443;IOR=0.078;IOZ=-8.417;IOH=0.001;IOD=0.000;AOI=-900.137;AOZ=-891.719;ABE=0.387;ABZ=-27.484;BCS=-30124.013;FIC=-0.481;LQR=0.025;MQ0=0.000;MQ10=0.593;MQ20=0.653;MQ30=0.841;MENDEL=3;SVM=-1.2805891;AN=530;EFF=INTERGENIC(LOW||||||||)
1	52058	rs62637813	G	C	0.0	SVM	NS=229;AF=0.431;AC=201;s50=0.49;LBS=1,11,6,23,70,185,0,6;OBS=0,2,519,588,1665,1759,1,0;STZ=0.015;STZ=1.008;CBZ=-0.005;CBZ=-0.325;QBZ=0.054;QBZ=3.628;MBR=-0.603;MSR=-0.019;MBZ=-40.612;IOZ=0.115;IOH=-4.803;IOD=0.000;IOD=-0.000;AOZ=-271.270;AOZ=-266.468;ABZ=0.666;ABZ=20.615;BCS=-3758.556;FIC=-0.013;LQR=0.059;MQ10=0.000;MQ10=0.244;MQ20=0.392;MQ30=0.862;MENDEL=1;SVM=-1.4907071;AN=458;EFF=INTERGENIC(LOW||||||||)
1	52105	.	A	T	0.0	SVM	NS=192;AF=0.002;AC=1;s50=0.42;LBS=84,173,3,2,3,0,9,11;OBS=2407,4813,1,2,0,0,1440,3939;STR=0.071;STZ=7.914;CBR=-0.058;CBZ=-6.497;QBR=0.203;QBZ=22.748;MBR=-0.319;MSR=0.019;MBZ=-35.753;IOR=0.045;IOZ=-8.006;IOH=0.000;IOD=0.000;AOI=-786.344;AOZ=-778.338;ABE=0.436;ABZ=-16.514;BCS=-23481.296;FIC=-96.851;LQR=0.022;MQ0=0.000;MQ10=0.811;MQ20=0.861;MQ30=0.956;MENDEL=0;SVM=-1.6089863;AN=384;EFF=INTERGENIC(LOW||||||||)
1	52238	rs150021059	T	G	0.0	SVM	NS=331;AF=0.986;AC=647;s50=0.71;LBS=0,0,2,0,43,23,19,26;OBS=1,5,1,1,2976,4913,108,201;STZ=-0.011;STZ=-0.971;CBZ=-0.005;CBZ=-0.475;QBZ=0.145;QBZ=13.101;MBR=-0.227;MSR=0.018;MBZ=-20.534;IOZ=0.193;IOH=-5.762;IOD=0.001;IOD=0.000;AOZ=-1573.939;AOZ=-1568.177;ABZ=0.418;ABZ=-5.816;BCS=-43930.258;FIC=-0.832;LQR=0.013;MQ10=0.000;MQ10=0.680;MQ20=0.740;MQ30=0.897;MENDEL=0;SVM=-1.2997761;AN=662;EFF=INTERGENIC(LOW||||||||)
1	52253	.	C	G	0.0	SVM	NS=432;AF=0.002;AC=2;s50=0.93;LBS=1,1,56,45,7,5,3,0;OBS=1,1,2844,5123,32,74,2,1;STR=0.013;STZ=1.142;CBR=0.003;CBZ=0.304;QBR=0.008;QBZ=0.721;MBR=0.116;MSR=0.021;MBZ=10.413;IOR=0.110;IOZ=-6.359;IOH=0.000;IOD=-0.001;AOI=-25.127;AOZ=-18.767;ABE=0.496;ABZ=-0.155;BCS=-375.658;FIC=-2.114;LQR=0.014;MQ0=0.000;MQ10=0.575;MQ20=0.660;MQ30=0.860;MENDEL=0;SVM=-0.19453051;AN=864;EFF=INTERGENIC(LOW||||||||)
1	52727	rs145254185	C	G	0.0	SVM	NS=362;AF=0.544;AC=398;s50=0.78;LBS=0,9,102,521,11,49,1,9;OBS=0,3,3984,6633,804,1098,0,2;STZ=-0.035;STZ=-3.926;CBZ=0.012;CBZ=1.298;QBZ=0.103;QBZ=11.576;MBR=-0.438;MSR=0.016;MBZ=-48.955;IOZ=0.071;IOH=-8.126;IOD=0.001;IOD=0.001;AOZ=-279.343;AOZ=-271.217;ABZ=0.736;ABZ=37.041;BCS=-4513.178;FIC=0.189;LQR=0.052;MQ10=0.000;MQ10=0.137;MQ20=0.287;MQ30=0.899;MENDEL=3;SVM=-0.68514436;AN=724;EFF=INTERGENIC(LOW||||||||)
1	53206	.	G	C	0.0	SVM	NS=276;AF=0.534;AC=296;s50=0.59;LBS=7,3,47,39,146,155,2,1;OBS=2,0,1580,3450,4770,7294,1,0;STR=0.077;STZ=10.018;CBR=-0.023;CBZ=-2.982;QBR=0.105;QBZ=13.763;MBR=-0.501;MSR=-0.046;MBZ=-65.541;IOR=0.041;IOZ=-8.410;IOH=0.000;IOD=0.000;AOI=-700.915;AOZ=-692.505;ABE=0.744;ABZ=61.634;BCS=-19562.932;FIC=-0.099;LQR=0.022;MQ0=0.000;MQ10=0.202;MQ20=0.318;MQ30=0.916;MENDEL=0;SVM=-0.96806349;AN=552;EFF=INTERGENIC(LOW||||||||)
1	53789	.	A	C	0.0	SVM	NS=112;AF=0.004;AC=1;s50=0.25;LBS=426,180,139,57,30,14,37,6;OBS=3849,4677,3618,4330,3,1,4,1;STR=-0.004;STZ=-0.485;CBR=0.013;CBZ=1.687;QBR=0.273;QBZ=35.068;MBR=-0.293;MSR=0.026;MBZ=-37.586;IOR=0.107;IOZ=-8.654;IOH=0.000;IOD=-0.000;AOI=-1068.306;AOZ=-1059.652;ABE=0.450;ABZ=-15.359;BCS=-35680.585;FIC=-66.725;LQR=0.046;MQ0=0.000;MQ10=0.867;MQ20=0.894;MQ30=0.970;MENDEL=0;SVM=-2.1881015;AN=224;EFF=INTERGENIC(LOW||||||||)
1	53817	.	A	G	0.0	SVM	NS=240;AF=0.002;AC=1;s50=0.53;LBS=40,131,4,7,47,70,2,6;OBS=8938,5362,1,2,5154,3094,1,1;STR=0.000;STZ=0.024;CBR=-0.015;CBZ=-2.309;QBR=0.075;QBZ=11.321;MBR=-0.255;MSR=-0.003;MBZ=-38.341;IOR=0.050;IOZ=-9.778;IOH=0.000;IOD=-0.000;AOI=-986.083;AOZ=-976.305;ABE=0.503;ABZ=0.984;BCS=-35748.527;FIC=-89.220;LQR=0.013;MQ0=0.000;MQ10=0.851;MQ20=0.877;MQ30=0.971;MENDEL=0;SVM=-2.3724675;AN=480;EFF=INTERGENIC(LOW||||||||)
1	54043	.	C	T	0.0	SVM	NS=281;AF=0.854;AC=478;s50=0.61;LBS=5,5,52,79,1,5,62,80;OBS=1,1,2608,3017,0,1,2106,2691;STR=0.025;STZ=2.516;CBR=0.026;CBZ=2.620;QBR=-0.005;QBZ=-0.526;MBR=-0.493;MSR=0.004;MBZ=-50.361;IOR=0.059;IOZ=-6.936;IOH=0.000;IOD=0.000;AOI=-807.719;AOZ=-800.783;ABE=0.680;ABZ=40.281;BCS=-21144.016;FIC=-1.095;LQR=0.026;MQ0=0.000;MQ10=0.261;MQ20=0.379;MQ30=0.867;MENDEL=0;SVM=-1.0504304;AN=562;EFF=INTERGENIC(LOW||||||||)
1	54222	.	A	C	0.0	SVM	NS=336;AF=0.003;AC=2;s50=0.72;LBS=81,107,14,31,4,6,4,4;OBS=8752,6457,2214,1755,0,1,0,1;STR=0.014;STZ=2.000;CBR=0.044;CBZ=6.059;QBR=0.042;QBZ=5.861;MBR=-0.016;MSR=0.034;MBZ=-2.184;IOR=0.025;IOZ=-8.806;IOH=0.000;IOD=-0.000;AOI=-530.773;AOZ=-521.967;ABE=0.663;ABZ=42.343;BCS=-14163.666;FIC=-43.362;LQR=0.012;MQ0=0.000;MQ10=0.710;MQ20=0.769;MQ30=0.953;MENDEL=0;SVM=-2.0740398;AN=672;EFF=INTERGENIC(LOW||||||||)
1	54353	rs140052487	C	A	0.0	SVM	NS=323;AF=0.001;AC=1;s50=0.70;LBS=12,15,153,244,5,8,13,10;OBS=167,206,6761,10419,1,5,4,7;STR=-0.016;STZ=-2.126;CBR=-0.004;CBZ=-0.479;QBR=-0.051;QBZ=-6.819;MBR=0.104;MSR=0.021;MBZ=13.806;IOR=0.170;IOZ=-9.092;IOH=0.000;IOD=-0.001;AOI=-55.252;AOZ=-46.160;ABE=0.514;ABZ=1.039;BCS=-1398.653;FIC=-9.371;LQR=0.024;MQ0=0.022;MQ10=0.250;MQ20=0.386;MQ30=0.824;MENDEL=0;SVM=-0.67270534;AN=646;EFF=INTERGENIC(LOW||||||||)
1	54366	rs144110155	A	G	0.0	SVM	NS=167;AF=0.020;AC=7;s50=0.36;LBS=611,369,45,2,218,73,54,5;OBS=5478,11998,3,3,2415,4529,6,2;STZ=-0.033;STZ=-5.175;CBZ=-0.065;CBZ=-10.225;QBZ=0.096;QBZ=15.071;MBR=-0.030;MSR=0.018;MBZ=-4.756;IOZ=0.092;IOH=-11.795;IOD=0.001;IOD=-0.000;AOZ=-692.796;AOZ=-681.001;ABZ=0.590;ABZ=30.311;BCS=-26439.694;FIC=-12.057;LQR=0.049;MQ10=0.027;MQ10=0.286;MQ20=0.396;MQ30=0.772;MENDEL=0;SVM=-0.7304887;AN=334;EFF=INTERGENIC(LOW||||||||)
1	54380	.	T	C	0.0	SVM	NS=153;AF=0.256;AC=79;s50=0.34;LBS=4,3,91,115,2,1,226,218;OBS=1,2,3444,7512,0,1,4369,9683;STR=-0.004;STZ=-0.582;CBR=0.083;CBZ=13.092;QBR=0.102;QBZ=16.137;MBR=-0.567;MSR=0.029;MBZ=-89.681;IOR=0.032;IOZ=-11.079;IOH=0.000;IOD=-0.000;AOI=-1157.847;AOZ=-1146.769;ABE=0.658;ABZ=52.058;BCS=-49501.986;FIC=-0.333;LQR=0.025;MQ0=0.027;MQ10=0.326;MQ20=0.418;MQ30=0.753;MENDEL=2;SVM=-1.2552932;AN=306;EFF=INTERGENIC(LOW||||||||)
1	54395	.	C	T	0.0	SVM	NS=331;AF=0.035;AC=24;s50=0.69;LBS=23,5,401,229,19,8,70,34;OBS=3,3,5507,14229,1,1,1295,2762;STR=-0.033;STZ=-5.162;CBR=0.044;CBZ=6.780;QBR=0.073;QBZ=11.275;MBR=-0.348;MSR=0.036;MBZ=-53.707;IOR=0.071;IOZ=-10.239;IOH=0.000;IOD=-0.000;AOI=-467.941;AOZ=-457.702;ABE=0.525;ABZ=6.094;BCS=-16694.634;FIC=-2.747;LQR=0.030;MQ0=0.027;MQ10=0.481;MQ20=0.554;MQ30=0.801;MENDEL=0;SVM=-1.1374056;AN=662;EFF=INTERGENIC(LOW||||||||)
1	54421	rs146477069	A	G	0.0	SVM	NS=343;AF=0.006;AC=3;s50=0.73;LBS=190,658,12,3,110,72,15,10;OBS=2517,7216,33,34,1531,3264,2,4;STR=-0.064;STZ=-7.674;CBR=0.082;CBZ=9.887;QBR=0.171;QBZ=20.653;MBR=0.425;MSR=0.004;MBZ=51.231;IOR=0.463;IOZ=-9.192;IOH=0.004;IOD=-0.001;AOI=-604.930;AOZ=-595.738;ABE=0.463;ABZ=-9.674;BCS=-20698.386;FIC=-21.771;LQR=0.066;MQ0=0.044;MQ10=0.373;MQ20=0.464;MQ30=0.825;MENDEL=0;SVM=-0.8369286;AN=686;EFF=INTERGENIC(LOW||||||||)
1	54479	.	A	T	0.0	SVM	NS=344;AF=0.165;AC=115;s50=0.74;LBS=200,331,10,3,8,3,19,33;OBS=3733,7551,0,5,1,4,430,1007;STZ=0.021;STZ=2.395;CBZ=-0.079;CBZ=-8.959;QBZ=0.027;QBZ=3.050;MBR=-0.434;MSR=0.042;MBZ=-48.996;IOZ=0.134;IOH=-8.029;IOD=0.001;IOD=0.000;AOZ=-213.694;AOZ=-205.664;ABZ=0.755;ABZ=39.323;BCS=-3538.708;FIC=-0.050;LQR=0.044;MQ10=0.023;MQ10=0.157;MQ20=0.283;MQ30=0.744;MENDEL=4;SVM=-0.29560653;AN=688;EFF=INTERGENIC(LOW||||||||)
1	54490	rs141149254	G	A	0.0	PASS	NS=416;AF=0.034;AC=28;s50=0.89;LBS=80,53,5,1,150,362,2,5;OBS=618,1386,1,0,2750,5216,1,1;STR=0.031;STZ=3.110;CBR=0.016;CBZ=1.574;QBR=-0.059;QBZ=-5.899;MBR=0.295;MSR=0.069;MBZ=29.459;IOR=0.045;IOZ=-7.956;IOH=0.000;IOD=-0.000;AOI=-299.669;AOZ=-291.712;ABE=0.528;ABZ=5.078;BCS=-7422.873;FIC=-1.486;LQR=0.061;MQ0=0.027;MQ10=0.228;MQ20=0.347;MQ30=0.757;MENDEL=0;SVM=0.85335139;AN=832;EFF=INTERGENIC(LOW||||||||)
1	54586	rs114201130	T	C	0.0	SVM	NS=305;AF=0.580;AC=358;s50=0.65;LBS=3,4,32,73,2,0,213,786;OBS=1,4,2264,5028,0,3,4710,8086;STZ=0.058;STZ=8.245;CBZ=-0.041;CBZ=-5.787;QBZ=0.196;QBZ=27.818;MBR=-0.655;MSR=-0.016;MBZ=-92.817;IOZ=0.071;IOH=-10.254;IOD=0.000;IOD=-0.000;AOZ=-833.589;AOZ=-823.336;ABZ=0.698;ABZ=61.350;BCS=-29911.588;FIC=-0.357;LQR=0.052;MQ10=0.000;MQ10=0.330;MQ20=0.446;MQ30=0.898;MENDEL=2;SVM=-1.3897762;AN=610;EFF=INTERGENIC(LOW||||||||)
1	54676	rs2462492	C	T	0.0	SVM	NS=170;AF=0.384;AC=132;s50=0.36;LBS=8,12,190,211,5,15,164,301;OBS=0,3,4209,6926,0,1,3053,6606;STR=0.065;STZ=9.340;CBR=-0.140;CBZ=-20.121;QBR=-0.129;QBZ=-18.591;MBR=-0.685;MSR=-0.056;MBZ=-98.793;IOR=0.036;IOZ=-10.444;IOH=0.000;IOD=-0.000;AOI=-1082.426;AOZ=-1071.982;ABE=0.613;ABZ=31.260;BCS=-41337.015;FIC=-0.195;LQR=0.040;MQ0=0.000;MQ10=0.367;MQ20=0.448;MQ30=0.804;MENDEL=2;SVM=-1.2236342;AN=340;EFF=INTERGENIC(LOW||||||||)
1	54708	rs115797567	G	C	0.0	SVM	NS=124;AF=0.198;AC=51;s50=0.26;LBS=8,0,40,47,128,132,8,3;OBS=0,4,333,904,2523,5524,3,12;STR=0.033;STZ=3.135;CBR=0.109;CBZ=10.515;QBR=-0.156;QBZ=-15.047;MBR=-0.550;MSR=0.008;MBZ=-53.012;IOR=0.295;IOZ=-6.712;IOH=0.001;IOD=-0.001;AOI=-215.930;AOZ=-209.218;ABE=0.488;ABZ=-0.784;BCS=-3674.391;FIC=0.237;LQR=0.036;MQ0=0.000;MQ10=0.127;MQ20=0.225;MQ30=0.355;MENDEL=1;SVM=-0.22220774;AN=248;EFF=INTERGENIC(LOW||||||||)
1	54716	.	C	T	0.0	SVM	NS=28;AF=0.036;AC=2;s50=0.06;LBS=5,6,65,304,4,0,13,24;OBS=0,2,1577,6454,0,0,99,483;STR=0.016;STZ=1.515;CBR=-0.001;CBZ=-0.105;QBR=0.047;QBZ=4.376;MBR=-0.183;MSR=-0.140;MBZ=-16.988;IOR=0.041;IOZ=-6.873;IOH=0.001;IOD=0.000;AOI=-104.971;AOZ=-98.098;ABE=0.661;ABZ=11.296;BCS=-1046.224;FIC=-1.453;LQR=0.045;MQ0=0.140;MQ10=0.314;MQ20=0.414;MQ30=0.528;MENDEL=0;SVM=-1.6810892;AN=56;EFF=INTERGENIC(LOW||||||||)
1	54753	rs143174675	T	G	0.0	SVM	NS=33;AF=0.029;AC=2;s50=0.07;LBS=0,3,3,3,0,2,23,85;OBS=7,26,1,10,40,245,879,5579;STR=-0.003;STZ=-0.262;CBR=0.018;CBZ=1.499;QBR=0.018;QBZ=1.491;MBR=-0.000;MSR=0.006;MBZ=-0.040;IOR=0.537;IOZ=-6.088;IOH=0.007;IOD=0.000;AOI=-54.855;AOZ=-48.767;ABE=0.652;ABZ=10.018;BCS=-1031.618;FIC=-0.521;LQR=0.016;MQ0=0.283;MQ10=0.447;MQ20=0.552;MQ30=0.776;MENDEL=0;SVM=-2.6191168;AN=66;EFF=INTERGENIC(LOW||||||||)
1	54771	.	T	C	0.0	SVM	NS=35;AF=0.651;AC=41;s50=0.06;LBS=2,1,54,43,2,5,250,174;OBS=1,17,200,1147,1,2,2389,12394;STR=0.010;STZ=1.234;CBR=0.062;CBZ=7.829;QBR=-0.136;QBZ=-17.307;MBR=-0.324;MSR=0.031;MBZ=-41.207;IOR=0.194;IOZ=-9.319;IOH=0.002;IOD=0.000;AOI=-173.912;AOZ=-164.593;ABE=0.730;ABZ=27.540;BCS=-2589.801;FIC=0.593;LQR=0.031;MQ0=0.039;MQ10=0.148;MQ20=0.278;MQ30=0.666;MENDEL=0;SVM=-1.343789;AN=70;EFF=INTERGENIC(LOW||||||||)
1	54844	rs151155335	G	A	0.0	SVM	NS=148;AF=0.003;AC=1;s50=0.32;LBS=160,266,7,3,89,95,2,5;OBS=2526,5371,2,1,1932,3538,0,0;STR=0.035;STZ=4.019;CBR=0.015;CBZ=1.746;QBR=-0.101;QBZ=-11.636;MBR=0.214;MSR=0.002;MBZ=24.730;IOR=0.041;IOZ=-8.433;IOH=0.000;IOD=-0.000;AOI=-1094.049;AOZ=-1085.616;ABE=0.363;ABZ=-39.227;BCS=-33578.658;FIC=-108.436;LQR=0.044;MQ0=0.000;MQ10=0.202;MQ20=0.365;MQ30=0.845;MENDEL=0;SVM=-0.47357418;AN=296;EFF=INTERGENIC(LOW||||||||)
1	55131	.	A	G	0.0	SVM	NS=340;AF=0.272;AC=182;s50=0.72;LBS=200,723,3,17,26,131,5,22;OBS=5148,6936,1,2,664,794,1,5;STZ=-0.018;STZ=-2.145;CBZ=-0.015;CBZ=-1.773;QBZ=-0.045;QBZ=-5.278;MBR=-0.216;MSR=-0.004;MBZ=-25.189;IOZ=0.110;IOH=-8.515;IOD=0.001;IOD=0.000;AOZ=-205.521;AOZ=-197.007;ABZ=0.697;ABZ=27.356;BCS=-3375.413;FIC=0.146;LQR=0.074;MQ10=0.007;MQ10=0.136;MQ20=0.295;MQ30=0.745;MENDEL=7;SVM=-0.018296142;AN=680;EFF=INTERGENIC(LOW||||||||)
1	55164	rs3091274	C	A	0.0	SVM	NS=409;AF=0.986;AC=805;s50=0.88;LBS=217,530,75,100,4,7,0,4;OBS=3582,7758,295,693,9,0,0,3;STR=-0.010;STZ=-1.111;CBR=-0.025;CBZ=-2.776;QBR=-0.048;QBZ=-5.375;MBR=-0.063;MSR=-0.053;MBZ=-7.043;IOR=0.123;IOZ=-9.241;IOH=0.004;IOD=0.003;AOI=-1429.189;AOZ=-1419.948;ABE=0.442;ABZ=-4.754;BCS=-57321.238;FIC=-1.939;LQR=0.070;MQ0=0.010;MQ10=0.304;MQ20=0.448;MQ30=0.800;MENDEL=1;SVM=-0.24530969;AN=818;EFF=INTERGENIC(LOW||||||||)
1	55299	rs10399749	C	T	0.0	SVM	NS=152;AF=0.199;AC=59;s50=0.33;LBS=7,12,89,321,5,15,218,423;OBS=1,39,2493,5404,4,15,2805,5998;STR=-0.003;STZ=-0.409;CBR=-0.034;CBZ=-4.420;QBR=-0.007;QBZ=-0.914;MBR=0.089;MSR=0.070;MBZ=11.452;IOR=0.355;IOZ=-10.226;IOH=0.003;IOD=-0.000;AOI=-976.816;AOZ=-966.590;ABE=0.478;ABZ=-6.525;BCS=-37826.755;FIC=-1.111;LQR=0.059;MQ0=0.000;MQ10=0.156;MQ20=0.266;MQ30=0.634;MENDEL=0;SVM=-0.4354389;AN=304;EFF=INTERGENIC(LOW||||||||)
1	55302	rs3091273	C	T	0.0	SVM	NS=150;AF=0.325;AC=100;s50=0.33;LBS=12,15,234,301,11,30,179,104;OBS=1,9,3146,7365,0,4,1901,4867;STR=0.020;STZ=2.598;CBR=-0.049;CBZ=-6.444;QBR=0.012;QBZ=1.565;MBR=-0.462;MSR=0.050;MBZ=-60.738;IOR=0.124;IOZ=-9.937;IOH=0.001;IOD=0.000;AOI=-794.300;AOZ=-784.363;ABE=0.590;ABZ=21.347;BCS=-29768.017;FIC=0.017;LQR=0.045;MQ0=0.000;MQ10=0.163;MQ20=0.270;MQ30=0.611;MENDEL=3;SVM=-0.58740098;AN=300;EFF=INTERGENIC(LOW||||||||)
1	55322	rs3107974	C	T	0.0	SVM	NS=253;AF=0.193;AC=100;s50=0.55;LBS=4,7,47,71,4,4,67,123;OBS=0,1,2177,5430,0,1,1658,3871;STR=-0.015;STZ=-1.705;CBR=0.053;CBZ=6.063;QBR=-0.036;QBZ=-4.179;MBR=-0.572;MSR=0.042;MBZ=-65.526;IOR=0.031;IOZ=-7.897;IOH=0.000;IOD=0.000;AOI=-820.061;AOZ=-812.163;ABE=0.578;ABZ=15.885;BCS=-25706.207;FIC=-0.132;LQR=0.023;MQ0=0.000;MQ10=0.207;MQ20=0.297;MQ30=0.559;MENDEL=6;SVM=-0.46089005;AN=506;EFF=INTERGENIC(LOW||||||||)
1	55326	rs3107975	T	C	0.0	SVM	NS=249;AF=0.198;AC=101;s50=0.54;LBS=9,23,34,184,5,24,89,179;OBS=4,0,2025,4028,0,3,2107,4989;STR=-0.040;STZ=-4.631;CBR=0.071;CBZ=8.147;QBR=0.086;QBZ=9.901;MBR=-0.499;MSR=0.051;MBZ=-57.271;IOR=0.093;IOZ=-8.271;IOH=0.000;IOD=-0.000;AOI=-854.101;AOZ=-845.830;ABE=0.545;ABZ=9.356;BCS=-28362.224;FIC=-0.115;LQR=0.036;MQ0=0.000;MQ10=0.188;MQ20=0.296;MQ30=0.569;MENDEL=6;SVM=-0.53503885;AN=498;EFF=INTERGENIC(LOW||||||||)
1	55367	.	G	A	0.0	SVM	NS=455;AF=0.001;AC=1;s50=0.98;LBS=5,2,3,1,95,68,1,0;OBS=7,14,1,1,4545,7031,1,1;STR=0.005;STZ=0.496;CBR=0.018;CBZ=1.893;QBR=-0.041;QBZ=-4.411;MBR=0.034;MSR=0.076;MBZ=3.665;IOR=0.069;IOZ=-7.365;IOH=0.000;IOD=-0.000;AOI=-10.351;AOZ=-2.986;ABE=0.715;ABZ=4.576;BCS=11.306;FIC=-0.241;LQR=0.014;MQ0=0.000;MQ10=0.663;MQ20=0.732;MQ30=0.856;MENDEL=0;SVM=-0.39714389;AN=910;EFF=INTERGENIC(LOW||||||||)
1	55381	.	G	A	0.0	SVM	NS=323;AF=0.355;AC=234;s50=0.70;LBS=168,748,22,24,168,360,21,42;OBS=4763,7744,1,3,1726,3004,3,6;STR=-0.015;STZ=-1.923;CBR=0.022;CBZ=2.897;QBR=0.008;QBZ=0.996;MBR=-0.820;MSR=0.009;MBZ=-107.646;IOR=0.112;IOZ=-10.145;IOH=0.001;IOD=-0.000;AOI=-1434.590;AOZ=-1424.445;ABE=0.489;ABZ=-2.121;BCS=-60973.439;FIC=0.149;LQR=0.077;MQ0=0.000;MQ10=0.704;MQ20=0.747;MQ30=0.845;MENDEL=13;SVM=-1.1905639;AN=646;EFF=INTERGENIC(LOW||||||||)
1	55388	.	C	A	0.0	SVM	NS=313;AF=0.195;AC=118;s50=0.59;LBS=27,90,60,139,5,2,4,9;OBS=4654,7996,5227,8515,0,2,1,2;STR=0.013;STZ=2.089;CBR=-0.004;CBZ=-0.613;QBR=-0.066;QBZ=-10.783;MBR=-0.480;MSR=0.019;MBZ=-77.977;IOR=0.042;IOZ=-10.698;IOH=0.000;IOD=-0.000;AOI=-1380.512;AOZ=-1369.814;ABE=0.379;ABZ=-37.861;BCS=-58876.648;FIC=0.110;LQR=0.012;MQ0=0.000;MQ10=0.755;MQ20=0.795;MQ30=0.902;MENDEL=5;SVM=-1.455873;AN=626;EFF=INTERGENIC(LOW||||||||)
1	55394	rs2949420	T	A	0.0	SVM	NS=327;AF=0.353;AC=235;s50=0.70;LBS=359,550,7,15,8,15,93,174;OBS=4997,8064,10,2,17,2,2280,4419;STZ=-0.041;STZ=-5.825;CBZ=-0.031;CBZ=-4.420;QBZ=0.004;QBZ=0.492;MBR=-0.803;MSR=0.044;MBZ=-112.895;IOZ=0.208;IOH=-10.846;IOD=0.001;IOD=-0.001;AOZ=-1393.154;AOZ=-1382.308;ABZ=0.529;ABZ=6.533;BCS=-63194.777;FIC=0.119;LQR=0.056;MQ10=0.000;MQ10=0.632;MQ20=0.690;MQ30=0.835;MENDEL=12;SVM=-1.3885683;AN=654;EFF=INTERGENIC(LOW||||||||)
1	55545	rs28396308	C	T	0.0	SVM	NS=250;AF=0.681;AC=339;s50=0.53;LBS=2,19,73,497,1,47,111,373;OBS=0,10,2195,3714,2,8,2956,3824;STR=-0.066;STZ=-7.381;CBR=0.026;CBZ=2.925;QBR=-0.029;QBZ=-3.303;MBR=-0.370;MSR=0.034;MBZ=-41.725;IOR=0.224;IOZ=-8.294;IOH=0.001;IOD=-0.001;AOI=-945.002;AOZ=-936.709;ABE=0.566;ABZ=11.860;BCS=-31136.228;FIC=0.063;LQR=0.077;MQ0=0.000;MQ10=0.141;MQ20=0.265;MQ30=0.622;MENDEL=7;SVM=-0.27528357;AN=500;EFF=INTERGENIC(LOW||||||||)
1	55550	.	A	T	0.0	PASS	NS=327;AF=0.387;AC=255;s50=0.69;LBS=125,264,6,5,2,12,29,30;OBS=4508,6623,1,6,1,3,519,688;STR=-0.015;STZ=-1.683;CBR=0.009;CBZ=1.021;QBR=0.003;QBZ=0.375;MBR=-0.398;MSR=0.022;MBZ=-44.232;IOR=0.151;IOZ=-7.864;IOH=0.002;IOD=0.001;AOI=-183.925;AOZ=-176.062;ABE=0.644;ABZ=15.287;BCS=-3551.760;FIC=0.451;LQR=0.035;MQ0=0.000;MQ10=0.131;MQ20=0.243;MQ30=0.594;MENDEL=10;SVM=0.28977778;AN=654;EFF=INTERGENIC(LOW||||||||)
1	55816	.	G	A	0.0	SVM	NS=303;AF=0.468;AC=289;s50=0.66;LBS=115,128,40,7,537,360,31,13;OBS=722,1465,5,1,3253,6558,3,15;STZ=0.001;STZ=0.123;CBZ=-0.020;CBZ=-2.156;QBZ=-0.079;QBZ=-8.700;MBR=-0.439;MSR=0.016;MBZ=-48.055;IOZ=0.251;IOH=-8.413;IOD=0.001;IOD=-0.001;AOZ=-303.949;AOZ=-295.536;ABZ=0.693;ABZ=30.125;BCS=-5711.078;FIC=0.144;LQR=0.087;MQ10=0.000;MQ10=0.146;MQ20=0.288;MQ30=0.753;MENDEL=4;SVM=-0.203778;AN=606;EFF=INTERGENIC(LOW||||||||)
1	55850	.	C	G	0.0	SVM	NS=280;AF=0.515;AC=293;s50=0.60;LBS=4,10,106,384,64,166,0,9;OBS=2,10,5977,6570,1406,1335,1,1;STR=-0.028;STZ=-3.472;CBR=0.030;CBZ=3.689;QBR=-0.022;QBZ=-2.738;MBR=-0.370;MSR=0.007;MBZ=-45.804;IOR=0.146;IOZ=-9.031;IOH=0.001;IOD=-0.000;AOI=-358.275;AOZ=-349.244;ABE=0.780;ABZ=59.471;BCS=-7102.182;FIC=0.185;LQR=0.045;MQ0=0.000;MQ10=0.125;MQ20=0.253;MQ30=0.755;MENDEL=4;SVM=-0.42746582;AN=560;EFF=INTERGENIC(LOW||||||||)
1	55926	rs143490913	T	C	0.0	SVM	NS=422;AF=0.989;AC=834;s50=0.91;LBS=6,17,58,144,3,10,69,118;OBS=3,13,2634,6763,2,1,402,643;STZ=0.069;STZ=7.057;CBZ=0.026;CBZ=2.685;QBZ=0.204;QBZ=20.880;MBR=-0.244;MSR=-0.051;MBZ=-24.953;IOZ=0.288;IOH=-6.799;IOD=0.001;IOD=-0.001;AOZ=-1577.408;AOZ=-1570.609;ABZ=0.557;ABZ=5.195;BCS=-50556.575;FIC=-2.167;LQR=0.036;MQ10=0.000;MQ10=0.450;MQ20=0.550;MQ30=0.898;MENDEL=0;SVM=-0.58127937;AN=844;EFF=INTERGENIC(LOW||||||||)
1	55976	.	T	C	0.0	SVM	NS=191;AF=0.645;AC=249;s50=0.41;LBS=5,6,31,43,2,1,361,320;OBS=0,0,2745,8362,0,1,3532,10389;STR=0.008;STZ=1.191;CBR=0.068;CBZ=10.748;QBR=0.315;QBZ=49.870;MBR=-0.704;MSR=0.028;MBZ=-111.377;IOR=0.010;IOZ=-10.217;IOH=0.000;IOD=-0.000;AOI=-1270.966;AOZ=-1260.749;ABE=0.627;ABZ=38.619;BCS=-51428.643;FIC=-0.432;LQR=0.029;MQ0=0.000;MQ10=0.394;MQ20=0.474;MQ30=0.855;MENDEL=2;SVM=-1.4218137;AN=382;EFF=INTERGENIC(LOW||||||||)
1	56277	.	T	G	0.0	SVM	NS=302;AF=0.094;AC=59;s50=0.65;LBS=0,0,2,1,22,8,192,131;OBS=0,2,0,3,477,968,4487,10536;STR=-0.019;STZ=-2.495;CBR=0.019;CBZ=2.427;QBR=0.006;QBZ=0.719;MBR=-0.340;MSR=0.031;MBZ=-43.624;IOR=0.061;IOZ=-8.750;IOH=0.000;IOD=-0.000;AOI=-199.449;AOZ=-190.699;ABE=0.733;ABZ=33.651;BCS=-3364.303;FIC=-0.299;LQR=0.021;MQ0=0.000;MQ10=0.112;MQ20=0.240;MQ30=0.782;MENDEL=2;SVM=-0.10497269;AN=604;EFF=INTERGENIC(LOW||||||||)
1	56485	.	C	T	0.0	SVM	NS=278;AF=0.576;AC=324;s50=0.60;LBS=2,0,163,76,0,0,25,25;OBS=0,2,2679,5773,0,1,585,1262;STR=0.000;STZ=0.013;CBR=-0.019;CBZ=-1.973;QBR=0.047;QBZ=4.792;MBR=-0.298;MSR=0.057;MBZ=-30.217;IOR=0.054;IOZ=-7.233;IOH=0.000;IOD=0.000;AOI=-302.995;AOZ=-295.762;ABE=0.740;ABZ=34.155;BCS=-5201.513;FIC=0.103;LQR=0.027;MQ0=0.000;MQ10=0.115;MQ20=0.242;MQ30=0.863;MENDEL=2;SVM=-0.42695878;AN=556;EFF=INTERGENIC(LOW||||||||)
1	56638	rs139224171	C	T	0.0	SVM	NS=143;AF=0.531;AC=153;s50=0.30;LBS=3,2,55,66,0,2,28,24;OBS=2,3,2288,2727,0,0,723,890;STR=0.007;STZ=0.560;CBR=0.010;CBZ=0.829;QBR=-0.022;QBZ=-1.825;MBR=-0.310;MSR=0.058;MBZ=-25.252;IOR=0.136;IOZ=-5.648;IOH=0.002;IOD=0.002;AOI=-334.976;AOZ=-329.328;ABE=0.722;ABZ=32.247;BCS=-5156.301;FIC=-0.052;LQR=0.025;MQ0=0.000;MQ10=0.114;MQ20=0.237;MQ30=0.813;MENDEL=2;SVM=-0.68781413;AN=286;EFF=INTERGENIC(LOW||||||||)
1	56799	.	T	C	0.0	SVM	NS=253;AF=0.615;AC=310;s50=0.53;LBS=4,1,41,14,2,1,247,167;OBS=2,0,593,574,0,0,2422,3139;STR=-0.055;STZ=-4.534;CBR=0.036;CBZ=2.935;QBR=0.068;QBZ=5.583;MBR=-0.123;MSR=0.017;MBZ=-10.103;IOR=0.047;IOZ=-6.401;IOH=0.000;IOD=-0.000;AOI=-217.870;AOZ=-211.469;ABE=0.726;ABZ=27.958;BCS=-2875.391;FIC=0.057;LQR=0.065;MQ0=0.000;MQ10=0.074;MQ20=0.250;MQ30=0.811;MENDEL=1;SVM=-0.55556296;AN=506;EFF=INTERGENIC(LOW||||||||)
1	56981	.	C	A	0.0	SVM	NS=335;AF=0.003;AC=2;s50=0.71;LBS=5,5,92,105,0,1,2,0;OBS=659,592,5954,6021,0,0,1,2;STR=-0.017;STZ=-1.990;CBR=0.016;CBZ=1.826;QBR=0.011;QBZ=1.267;MBR=-0.177;MSR=0.071;MBZ=-20.405;IOR=0.054;IOZ=-7.282;IOH=0.000;IOD=0.000;AOI=-205.903;AOZ=-198.622;ABE=0.505;ABZ=0.644;BCS=-5132.028;FIC=-12.568;LQR=0.015;MQ0=0.000;MQ10=0.668;MQ20=0.818;MQ30=0.910;MENDEL=0;SVM=-2.2936365;AN=670;EFF=INTERGENIC(LOW||||||||)
1	57033	rs148156827	T	C	0.0	PASS	NS=364;AF=0.178;AC=132;s50=0.78;LBS=5,36,2,69,1,40,312,618;OBS=2,0,149,164,0,2,2987,2937;STR=0.012;STZ=0.971;CBR=-0.046;CBZ=-3.617;QBR=0.016;QBZ=1.283;MBR=-0.190;MSR=0.033;MBZ=-15.007;IOR=0.084;IOZ=-6.613;IOH=0.000;IOD=-0.001;AOI=-61.130;AOZ=-54.517;ABE=0.603;ABZ=5.090;BCS=-258.415;FIC=0.560;LQR=0.138;MQ0=0.000;MQ10=0.076;MQ20=0.238;MQ30=0.677;MENDEL=3;SVM=0.44339219;AN=728;EFF=INTERGENIC(LOW||||||||)
1	57064	.	G	A	0.0	PASS	NS=329;AF=0.174;AC=116;s50=0.70;LBS=16,10,4,1,220,180,10,0;OBS=136,104,1,2,2172,2450,0,0;STR=-0.042;STZ=-2.923;CBR=-0.004;CBZ=-0.294;QBR=0.001;QBZ=0.044;MBR=-0.243;MSR=0.001;MBZ=-16.914;IOR=0.086;IOZ=-5.674;IOH=0.000;IOD=-0.001;AOI=-54.489;AOZ=-48.816;ABE=0.599;ABZ=4.382;BCS=-185.029;FIC=0.556;LQR=0.081;MQ0=0.000;MQ10=0.071;MQ20=0.239;MQ30=0.658;MENDEL=4;SVM=0.59293531;AN=658;EFF=INTERGENIC(LOW||||||||)
1	57246	.	C	G	0.0	SVM	NS=261;AF=0.534;AC=279;s50=0.55;LBS=0,0,37,36,3,6,1,0;OBS=0,1,1653,2763,657,1150,0,1;STR=0.010;STZ=0.792;CBR=0.021;CBZ=1.641;QBR=0.168;QBZ=13.286;MBR=-0.634;MSR=0.018;MBZ=-50.008;IOR=0.070;IOZ=-5.184;IOH=0.001;IOD=0.001;AOI=-409.036;AOZ=-403.852;ABE=0.729;ABZ=34.359;BCS=-6880.293;FIC=-0.010;LQR=0.013;MQ0=0.000;MQ10=0.242;MQ20=0.353;MQ30=0.838;MENDEL=3;SVM=-1.1078886;AN=522;EFF=INTERGENIC(LOW||||||||)
1	57376	rs150608250	C	T	0.0	SVM	NS=197;AF=0.519;AC=204;s50=0.41;LBS=0,1,247,326,1,0,38,84;OBS=1,1,2114,5565,0,0,1058,3097;STR=0.022;STZ=2.419;CBR=0.020;CBZ=2.203;QBR=0.036;QBZ=3.945;MBR=-0.447;MSR=-0.010;MBZ=-48.667;IOR=0.032;IOZ=-7.843;IOH=0.000;IOD=0.000;AOI=-622.427;AOZ=-614.585;ABE=0.696;ABZ=41.050;BCS=-16234.003;FIC=-0.223;LQR=0.055;MQ0=0.000;MQ10=0.202;MQ20=0.352;MQ30=0.785;MENDEL=1;SVM=-1.0471066;AN=394;EFF=INTERGENIC(LOW||||||||)
1	57641	.	A	C	0.0	SVM	NS=392;AF=0.006;AC=5;s50=0.84;LBS=105,90,7,0,15,3,3,4;OBS=4105,5085,201,298,7,1,7,2;STR=0.019;STZ=1.914;CBR=0.022;CBZ=2.188;QBR=0.088;QBZ=8.646;MBR=-0.114;MSR=-0.040;MBZ=-11.246;IOR=0.304;IOZ=-6.177;IOH=0.001;IOD=-0.001;AOI=-95.998;AOZ=-89.821;ABE=0.628;ABZ=12.648;BCS=-1942.510;FIC=-3.191;LQR=0.020;MQ0=0.000;MQ10=0.721;MQ20=0.761;MQ30=0.911;MENDEL=0;SVM=-1.9013599;AN=784;EFF=INTERGENIC(LOW||||||||)
1	57682	.	T	C	0.0	SVM	NS=191;AF=0.020;AC=8;s50=0.41;LBS=0,5,4,3,0,1,31,68;OBS=0,0,1304,2680,0,0,3265,5991;STR=0.025;STZ=2.821;CBR=0.055;CBZ=6.275;QBR=0.194;QBZ=22.303;MBR=-0.207;MSR=-0.005;MBZ=-23.772;IOR=0.000;IOZ=-6.716;IOH=0.000;IOD=0.000;AOI=-693.854;AOZ=-687.138;ABE=0.526;ABZ=6.409;BCS=-17508.730;FIC=-7.261;LQR=0.008;MQ0=0.000;MQ10=0.878;MQ20=0.902;MQ30=0.975;MENDEL=0;SVM=-2.082955;AN=382;EFF=INTERGENIC(LOW||||||||)
1	57818	.	C	A	0.0	PASS	NS=315;AF=0.198;AC=125;s50=0.67;LBS=10,15,119,144,0,0,3,1;OBS=121,321,1834,4263,0,1,3,7;STR=0.015;STZ=1.179;CBR=-0.016;CBZ=-1.313;QBR=-0.059;QBZ=-4.771;MBR=-0.150;MSR=0.032;MBZ=-12.143;IOR=0.261;IOZ=-5.575;IOH=0.001;IOD=-0.000;AOI=-95.963;AOZ=-90.388;ABE=0.699;ABZ=12.339;BCS=-538.904;FIC=0.500;LQR=0.042;MQ0=0.000;MQ10=0.081;MQ20=0.217;MQ30=0.879;MENDEL=0;SVM=0.21309445;AN=630;EFF=INTERGENIC(LOW||||||||)
1	57952	.	A	C	0.0	SVM	NS=457;AF=0.985;AC=899;s50=0.98;LBS=137,62,11,15,4,0,1,0;OBS=215,220,2665,4158,0,0,3,1;STR=0.050;STZ=4.289;CBR=-0.038;CBZ=-3.228;QBR=0.300;QBZ=25.568;MBR=-0.372;MSR=0.005;MBZ=-31.722;IOR=0.138;IOZ=-4.998;IOH=0.000;IOD=-0.001;AOI=-1574.091;AOZ=-1569.094;ABE=0.541;ABZ=2.956;BCS=-38650.487;FIC=-0.483;LQR=0.030;MQ0=0.000;MQ10=0.806;MQ20=0.854;MQ30=0.946;MENDEL=0;SVM=-0.66032414;AN=914;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	57990	.	C	G	0.0	SVM	NS=414;AF=0.153;AC=128;s50=0.86;LBS=4,7,146,317,53,52,3,16;OBS=1,4,8040,9160,5445,5131,2,7;STR=-0.046;STZ=-7.675;CBR=-0.024;CBZ=-4.073;QBR=0.100;QBZ=16.611;MBR=-0.385;MSR=0.010;MBZ=-64.110;IOR=0.102;IOZ=-11.097;IOH=0.000;IOD=-0.000;AOI=-1112.381;AOZ=-1101.284;ABE=0.379;ABZ=-34.762;BCS=-49318.410;FIC=-0.225;LQR=0.020;MQ0=0.000;MQ10=0.767;MQ20=0.799;MQ30=0.930;MENDEL=5;SVM=-0.98318362;AN=828;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	57999	rs143679055	G	T	0.0	SVM	NS=267;AF=0.524;AC=271;s50=0.53;LBS=8,2,16,5,216,181,300,201;OBS=3,1,2,10,3537,4372,10118,12822;STZ=0.005;STZ=0.950;CBZ=-0.030;CBZ=-5.222;QBZ=0.142;QBZ=24.910;MBR=-0.776;MSR=-0.009;MBZ=-136.270;IOZ=0.102;IOH=-11.859;IOD=0.000;IOD=-0.000;AOZ=-2247.139;AOZ=-2235.280;ABZ=0.459;ABZ=-8.423;BCS=-116364.421;FIC=-0.184;LQR=0.028;MQ10=0.000;MQ10=0.697;MQ20=0.738;MQ30=0.908;MENDEL=6;SVM=-1.0680283;AN=534;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	58211	.	A	G	0.0	SVM	NS=356;AF=0.999;AC=711;s50=0.77;LBS=60,87,1,4,62,79,0,3;OBS=38,45,0,0,3081,2376,7,3;STR=-0.026;STZ=-1.948;CBR=0.016;CBZ=1.214;QBR=0.179;QBZ=13.303;MBR=-0.052;MSR=0.001;MBZ=-3.872;IOR=0.262;IOZ=-5.278;IOH=0.003;IOD=0.002;AOI=-1182.162;AOZ=-1176.885;ABE=0.449;ABZ=-0.822;BCS=-29687.990;FIC=-1.851;LQR=0.049;MQ0=0.000;MQ10=0.446;MQ20=0.559;MQ30=0.890;MENDEL=0;SVM=-1.2407431;AN=712;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	58349	.	A	G	0.0	SVM	NS=391;AF=0.002;AC=2;s50=0.84;LBS=45,56,2,2,1,4,0,2;OBS=5573,4019,0,0,1349,736,0,0;STR=-0.051;STZ=-5.555;CBR=0.011;CBZ=1.226;QBR=0.157;QBZ=16.912;MBR=-0.219;MSR=0.013;MBZ=-23.681;IOR=0.000;IOZ=-6.272;IOH=0.000;IOD=0.000;AOI=-391.402;AOZ=-385.131;ABE=0.555;ABZ=10.230;BCS=-9093.926;FIC=-23.017;LQR=0.009;MQ0=0.000;MQ10=0.758;MQ20=0.795;MQ30=0.927;MENDEL=0;SVM=-1.7378692;AN=782;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	58432	.	T	C	0.0	PASS	NS=418;AF=0.162;AC=137;s50=0.90;LBS=2,14,5,14,2,11,261,195;OBS=0,0,226,222,0,0,3403,3390;STR=-0.002;STZ=-0.144;CBR=-0.011;CBZ=-0.933;QBR=0.048;QBZ=4.096;MBR=-0.321;MSR=0.005;MBZ=-27.345;IOR=0.000;IOZ=-6.114;IOH=0.000;IOD=0.000;AOI=-91.203;AOZ=-85.089;ABE=0.620;ABZ=7.977;BCS=-865.276;FIC=0.433;LQR=0.062;MQ0=0.000;MQ10=0.081;MQ20=0.190;MQ30=0.459;MENDEL=10;SVM=1.8166707;AN=836;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	58448	.	G	A	0.0	PASS	NS=406;AF=0.167;AC=137;s50=0.88;LBS=50,10,28,0,356,238,15,5;OBS=412,235,2,0,4202,3298,2,3;STR=-0.042;STZ=-3.760;CBR=-0.090;CBZ=-8.138;QBR=0.051;QBZ=4.575;MBR=-0.407;MSR=0.017;MBZ=-36.700;IOR=0.128;IOZ=-6.916;IOH=0.001;IOD=0.000;AOI=-114.494;AOZ=-107.578;ABE=0.686;ABZ=18.231;BCS=-1456.843;FIC=0.341;LQR=0.074;MQ0=0.000;MQ10=0.104;MQ20=0.220;MQ30=0.519;MENDEL=5;SVM=0.60804404;AN=812;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	58771	rs140128481	T	C	0.0	SVM	NS=192;AF=0.005;AC=2;s50=0.41;LBS=5,1,347,92,3,0,141,22;OBS=0,1,3082,3356,0,1,2635,2424;STR=0.042;STZ=4.484;CBR=-0.012;CBZ=-1.328;QBR=-0.117;QBZ=-12.584;MBR=0.403;MSR=0.031;MBZ=43.246;IOR=0.033;IOZ=-7.661;IOH=0.000;IOD=-0.000;AOI=-982.382;AOZ=-974.721;ABE=0.384;ABZ=-31.213;BCS=-27452.539;FIC=-56.898;LQR=0.050;MQ0=0.000;MQ10=0.269;MQ20=0.404;MQ30=0.831;MENDEL=0;SVM=-0.26653221;AN=384;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	58812	.	C	T	0.0	SVM	NS=264;AF=0.275;AC=145;s50=0.56;LBS=5,6,222,207,4,7,20,14;OBS=2,1,5612,6955,0,2,757,684;STR=-0.048;STZ=-5.687;CBR=0.022;CBZ=2.550;QBR=0.069;QBZ=8.219;MBR=-0.493;MSR=0.016;MBZ=-58.307;IOR=0.059;IOZ=-8.927;IOH=0.000;IOD=0.000;AOI=-195.927;AOZ=-187.000;ABE=0.741;ABZ=36.075;BCS=-4285.382;FIC=0.125;LQR=0.032;MQ0=0.000;MQ10=0.125;MQ20=0.249;MQ30=0.690;MENDEL=3;SVM=-0.70756572;AN=528;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	58814	rs114420996	G	A	0.0	PASS	NS=273;AF=0.005;AC=2;s50=0.58;LBS=55,89,5,3,179,285,7,3;OBS=1789,2141,1,1,4865,5747,4,0;STR=0.003;STZ=0.346;CBR=-0.004;CBZ=-0.541;QBR=-0.030;QBZ=-3.603;MBR=0.432;MSR=0.010;MBZ=52.093;IOR=0.064;IOZ=-9.352;IOH=0.000;IOD=-0.000;AOI=-496.386;AOZ=-487.034;ABE=0.541;ABZ=10.349;BCS=-14820.096;FIC=-25.677;LQR=0.040;MQ0=0.000;MQ10=0.147;MQ20=0.270;MQ30=0.695;MENDEL=0;SVM=1.1950485;AN=546;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	59040	rs149755937	T	C	0.0	SVM	NS=340;AF=0.039;AC=23;s50=0.73;LBS=6,4,108,182,3,11,149,289;OBS=0,3,1220,1870,0,3,4093,6047;STR=0.008;STZ=0.874;CBR=0.012;CBZ=1.339;QBR=-0.134;QBZ=-15.453;MBR=0.405;MSR=-0.069;MBZ=46.617;IOR=0.081;IOZ=-8.257;IOH=0.000;IOD=-0.000;AOI=-440.159;AOZ=-431.903;ABE=0.458;ABZ=-8.654;BCS=-12481.765;FIC=-2.354;LQR=0.052;MQ0=0.000;MQ10=0.300;MQ20=0.434;MQ30=0.838;MENDEL=0;SVM=-0.061251868;AN=680;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	59051	.	A	G	0.0	SVM	NS=286;AF=0.600;AC=349;s50=0.61;LBS=371,702,10,10,54,54,15,11;OBS=4484,5813,1,1,1368,2206,1,7;STR=0.047;STZ=5.494;CBR=0.029;CBZ=3.376;QBR=0.162;QBZ=19.042;MBR=-0.536;MSR=-0.011;MBZ=-63.129;IOR=0.113;IOZ=-8.883;IOH=0.001;IOD=0.000;AOI=-474.135;AOZ=-465.253;ABE=0.691;ABZ=42.804;BCS=-12852.346;FIC=-0.222;LQR=0.078;MQ0=0.000;MQ10=0.214;MQ20=0.353;MQ30=0.816;MENDEL=1;SVM=-1.0645794;AN=572;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	59258	.	A	C	0.0	SVM	NS=384;AF=0.008;AC=5;s50=0.82;LBS=294,720,18,31,14,60,20,58;OBS=4717,6987,333,640,1,7,8,10;STR=0.033;STZ=3.713;CBR=-0.032;CBZ=-3.617;QBR=0.115;QBZ=12.909;MBR=-0.174;MSR=0.051;MBZ=-19.586;IOR=0.259;IOZ=-8.571;IOH=0.000;IOD=-0.002;AOI=-136.515;AOZ=-127.944;ABE=0.481;ABZ=-2.104;BCS=-4120.165;FIC=-2.669;LQR=0.077;MQ0=0.000;MQ10=0.629;MQ20=0.702;MQ30=0.928;MENDEL=0;SVM=-1.5608586;AN=768;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	59276	.	C	T	0.0	SVM	NS=249;AF=0.242;AC=119;s50=0.50;LBS=7,7,131,296,0,8,15,25;OBS=1,1,3633,6812,1,1,4489,7597;STR=-0.025;STZ=-3.678;CBR=0.060;CBZ=8.994;QBR=0.239;QBZ=35.860;MBR=-0.599;MSR=0.025;MBZ=-89.876;IOR=0.043;IOZ=-9.457;IOH=0.000;IOD=-0.000;AOI=-1489.325;AOZ=-1479.868;ABE=0.410;ABZ=-29.956;BCS=-56745.771;FIC=-0.522;LQR=0.020;MQ0=0.000;MQ10=0.702;MQ20=0.754;MQ30=0.934;MENDEL=0;SVM=-1.289349;AN=498;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	59344	.	C	T	0.0	SVM	NS=182;AF=0.159;AC=60;s50=0.39;LBS=1,7,26,102,0,4,23,72;OBS=0,1,6893,15919,1,1,5312,13880;STR=0.028;STZ=5.707;CBR=0.040;CBZ=8.178;QBR=0.077;QBZ=15.883;MBR=-0.328;MSR=0.039;MBZ=-67.226;IOR=0.020;IOZ=-12.128;IOH=0.000;IOD=-0.000;AOI=-1843.519;AOZ=-1831.391;ABE=0.495;ABZ=-2.466;BCS=-85621.332;FIC=-1.409;LQR=0.005;MQ0=0.000;MQ10=0.734;MQ20=0.780;MQ30=0.952;MENDEL=0;SVM=-1.33124;AN=364;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	59492	.	A	G	0.0	PASS	NS=462;AF=0.002;AC=2;s50=1.00;LBS=242,305,18,7,12,8,12,3;OBS=5269,5871,2,3,33,41,2,0;STR=0.004;STZ=0.455;CBR=0.009;CBZ=0.997;QBR=0.005;QBZ=0.494;MBR=0.131;MSR=0.006;MBZ=13.833;IOR=0.107;IOZ=-7.640;IOH=0.000;IOD=-0.001;AOI=-18.297;AOZ=-10.657;ABE=0.483;ABZ=-0.559;BCS=-252.888;FIC=-0.569;LQR=0.048;MQ0=0.000;MQ10=0.549;MQ20=0.624;MQ30=0.916;MENDEL=0;SVM=2.5528092;AN=924;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	59498	.	T	C	0.0	SVM	NS=375;AF=0.567;AC=429;s50=0.81;LBS=5,3,4,10,1,4,142,334;OBS=12,20,4797,4934,2,1,3636,4054;STZ=-0.020;STZ=-2.641;CBZ=-0.019;CBZ=-2.495;QBZ=0.263;QBZ=34.742;MBR=-0.827;MSR=0.023;MBZ=-109.216;IOZ=0.325;IOH=-8.508;IOD=0.000;IOD=-0.002;AOZ=-1323.960;AOZ=-1315.452;ABZ=0.528;ABZ=7.299;BCS=-46925.380;FIC=-0.221;LQR=0.027;MQ10=0.000;MQ10=0.557;MQ20=0.625;MQ30=0.920;MENDEL=1;SVM=-1.1146144;AN=750;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	59615	.	C	T	0.0	SVM	NS=342;AF=0.001;AC=1;s50=0.73;LBS=5,0,125,65,5,2,116,56;OBS=0,3,4277,12696,0,3,890,2964;STR=0.019;STZ=2.726;CBR=0.051;CBZ=7.367;QBR=-0.096;QBZ=-13.821;MBR=0.613;MSR=0.050;MBZ=88.445;IOR=0.063;IOZ=-9.422;IOH=0.000;IOD=-0.000;AOI=-482.287;AOZ=-472.864;ABE=0.729;ABZ=75.647;BCS=-11459.742;FIC=-131.596;LQR=0.017;MQ0=0.000;MQ10=0.662;MQ20=0.713;MQ30=0.913;MENDEL=0;SVM=-0.83623505;AN=684;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	59941	.	A	G	0.0	SVM	NS=354;AF=0.001;AC=1;s50=0.75;LBS=39,145,0,4,31,97,5,4;OBS=3439,4402,0,0,1061,1438,2,0;STR=0.012;STZ=1.229;CBR=0.011;CBZ=1.117;QBR=-0.124;QBZ=-12.610;MBR=0.536;MSR=-0.021;MBZ=54.468;IOR=0.040;IOZ=-6.958;IOH=0.000;IOD=0.000;AOI=-423.234;AOZ=-416.276;ABE=0.610;ABZ=24.115;BCS=-8740.028;FIC=-123.352;LQR=0.029;MQ0=0.000;MQ10=0.548;MQ20=0.619;MQ30=0.918;MENDEL=0;SVM=-0.45353404;AN=708;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	60273	.	T	C	0.0	SVM	NS=302;AF=0.259;AC=156;s50=0.64;LBS=2,0,12,6,1,1,149,98;OBS=1,3,246,503,0,0,1992,4033;STZ=0.001;STZ=0.109;CBZ=0.035;CBZ=2.912;QBZ=0.032;QBZ=2.626;MBR=-0.145;MSR=0.060;MBZ=-11.957;IOZ=0.098;IOH=-6.066;IOD=0.000;IOD=-0.000;AOZ=-148.515;AOZ=-142.448;ABZ=0.692;ABZ=15.098;BCS=-2009.326;FIC=0.492;LQR=0.038;MQ10=0.000;MQ10=0.065;MQ20=0.222;MQ30=0.897;MENDEL=2;SVM=-0.049089628;AN=604;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	60408	.	C	T	0.0	SVM	NS=252;AF=0.552;AC=278;s50=0.53;LBS=1,0,168,239,0,4,27,32;OBS=0,0,2677,2170,0,1,537,670;STR=0.086;STZ=6.688;CBR=-0.026;CBZ=-2.008;QBR=0.170;QBZ=13.201;MBR=-0.406;MSR=-0.042;MBZ=-31.612;IOR=0.025;IOZ=-6.313;IOH=0.000;IOD=-0.000;AOI=-228.489;AOZ=-222.176;ABE=0.715;ABZ=29.643;BCS=-3491.379;FIC=0.042;LQR=0.071;MQ0=0.000;MQ10=0.153;MQ20=0.326;MQ30=0.799;MENDEL=2;SVM=-1.1671344;AN=504;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	60718	rs78395614	G	A	0.0	SVM	NS=242;AF=0.162;AC=73;s50=0.42;LBS=19,10,8,0,148,66,13,6;OBS=7002,3016,1,0,7907,4497,2,0;STR=-0.065;STZ=-9.696;CBR=-0.025;CBZ=-3.798;QBR=0.110;QBZ=16.406;MBR=-0.399;MSR=0.045;MBZ=-59.796;IOR=0.037;IOZ=-8.820;IOH=0.000;IOD=0.000;AOI=-1322.810;AOZ=-1313.990;ABE=0.367;ABZ=-43.075;BCS=-47645.782;FIC=-0.652;LQR=0.011;MQ0=0.000;MQ10=0.800;MQ20=0.837;MQ30=0.953;MENDEL=1;SVM=-1.4802691;AN=484;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	60726	.	C	A	0.0	SVM	NS=245;AF=0.732;AC=355;s50=0.51;LBS=636,141,343,203,22,20,8,7;OBS=8804,4390,3516,2013,1,1,0,1;STR=-0.030;STZ=-4.127;CBR=0.091;CBZ=12.466;QBR=0.124;QBZ=16.992;MBR=-0.804;MSR=0.020;MBZ=-110.001;IOR=0.031;IOZ=-9.670;IOH=0.000;IOD=-0.000;AOI=-1590.911;AOZ=-1581.240;ABE=0.499;ABZ=-0.228;BCS=-65224.261;FIC=-0.566;LQR=0.066;MQ0=0.000;MQ10=0.682;MQ20=0.737;MQ30=0.932;MENDEL=1;SVM=-1.4731556;AN=490;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	60791	rs76199781	A	G	0.0	SVM	NS=170;AF=0.525;AC=166;s50=0.30;LBS=283,61,6,1,59,4,14,8;OBS=2096,1520,1,0,352,276,142,65;STR=0.014;STZ=0.900;CBR=0.024;CBZ=1.534;QBR=0.040;QBZ=2.610;MBR=-0.198;MSR=-0.001;MBZ=-12.908;IOR=0.904;IOZ=-4.500;IOH=0.022;IOD=-0.027;AOI=-128.152;AOZ=-123.652;ABE=0.698;ABZ=18.131;BCS=-2723.965;FIC=0.269;LQR=0.088;MQ0=0.000;MQ10=0.125;MQ20=0.290;MQ30=0.819;MENDEL=0;SVM=-1.202795;AN=340;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	60829	.	C	T	0.0	PASS	NS=301;AF=0.235;AC=142;s50=0.65;LBS=1,0,126,77,3,1,9,6;OBS=0,0,2005,3073,0,0,109,129;STR=-0.027;STZ=-1.954;CBR=0.000;CBZ=0.034;QBR=-0.015;QBZ=-1.126;MBR=-0.140;MSR=0.077;MBZ=-10.226;IOR=0.000;IOZ=-5.722;IOH=0.000;IOD=0.000;AOI=-54.099;AOZ=-48.378;ABE=0.615;ABZ=5.022;BCS=-118.145;FIC=0.640;LQR=0.039;MQ0=0.000;MQ10=0.074;MQ20=0.256;MQ30=0.829;MENDEL=3;SVM=0.19860911;AN=602;EFF=UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	61099	.	T	C	0.0	PASS	NS=432;AF=0.001;AC=1;s50=0.93;LBS=3,0,20,18,5,1,82,34;OBS=0,0,204,222,1,0,2577,2193;STR=0.034;STZ=2.433;CBR=0.002;CBZ=0.134;QBR=-0.055;QBZ=-3.954;MBR=0.238;MSR=0.194;MBZ=17.129;IOR=0.037;IOZ=-5.093;IOH=0.000;IOD=-0.000;AOI=-101.812;AOZ=-96.720;ABE=0.509;ABZ=0.734;BCS=-1556.913;FIC=-31.224;LQR=0.029;MQ0=0.000;MQ10=0.466;MQ20=0.569;MQ30=0.882;MENDEL=0;SVM=0.059692055;AN=864;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	61115	.	G	A	0.0	PASS	NS=456;AF=0.001;AC=1;s50=0.98;LBS=7,7,2,3,92,52,2,6;OBS=64,61,0,0,2612,2282,1,0;STR=0.007;STZ=0.484;CBR=-0.020;CBZ=-1.440;QBR=-0.055;QBZ=-3.863;MBR=0.119;MSR=0.245;MBZ=8.419;IOR=0.040;IOZ=-4.931;IOH=0.000;IOD=-0.000;AOI=-34.219;AOZ=-29.288;ABE=0.432;ABZ=-2.833;BCS=-446.417;FIC=-8.354;LQR=0.031;MQ0=0.000;MQ10=0.436;MQ20=0.542;MQ30=0.877;MENDEL=0;SVM=0.24925367;AN=912;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	61219	.	T	C	0.0	SVM	NS=149;AF=0.003;AC=1;s50=0.33;LBS=1,5,63,203,2,5,51,104;OBS=2,4,2087,2503,1,0,1936,1588;STZ=0.094;STZ=8.454;CBZ=0.009;CBZ=0.834;QBZ=-0.021;QBZ=-1.864;MBR=0.098;MSR=0.051;MBZ=8.816;IOZ=0.140;IOH=-6.570;IOD=0.002;IOD=0.001;AOZ=-815.906;AOZ=-809.336;ABZ=0.354;ABZ=-31.369;BCS=-19287.633;FIC=-103.447;LQR=0.049;MQ10=0.000;MQ10=0.133;MQ20=0.300;MQ30=0.848;MENDEL=0;SVM=-0.56278275;AN=298;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	61442	rs74970982	A	G	0.0	SVM	NS=420;AF=0.999;AC=830;s50=0.89;LBS=21,19,0,0,22,22,0,0;OBS=55,42,0,0,2056,1762,1,1;STR=0.009;STZ=0.546;CBR=0.025;CBZ=1.592;QBR=0.156;QBZ=9.763;MBR=-0.188;MSR=0.022;MBZ=-11.782;IOR=0.126;IOZ=-3.722;IOH=0.000;IOD=-0.001;AOI=-1189.352;AOZ=-1185.631;ABE=0.494;ABZ=-0.158;BCS=-21421.718;FIC=-4.567;LQR=0.021;MQ0=0.000;MQ10=0.723;MQ20=0.801;MQ30=0.954;MENDEL=0;SVM=-1.4162258;AN=840;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	61462	rs56992750	T	A	0.0	PASS	NS=451;AF=0.004;AC=2;s50=0.97;LBS=6,29,4,19,3,19,169,226;OBS=76,159,1,27,1,12,2215,2839;STR=0.048;STZ=3.458;CBR=0.034;CBZ=2.493;QBR=-0.054;QBZ=-3.902;MBR=0.111;MSR=0.041;MBZ=8.078;IOR=0.513;IOZ=-6.108;IOH=0.002;IOD=-0.006;AOI=-45.043;AOZ=-38.934;ABE=0.588;ABZ=5.183;BCS=-865.676;FIC=-1.950;LQR=0.075;MQ0=0.000;MQ10=0.352;MQ20=0.454;MQ30=0.819;MENDEL=0;SVM=0.52248012;AN=902;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	61480	rs75526266	G	C	0.0	SVM	NS=355;AF=0.239;AC=171;s50=0.76;LBS=2,1,9,5,75,43,0,2;OBS=12,23,349,750,2956,5244,1,1;STR=0.029;STZ=2.783;CBR=-0.033;CBZ=-3.181;QBR=0.040;QBZ=3.891;MBR=-0.482;MSR=0.020;MBZ=-46.444;IOR=0.492;IOZ=-6.141;IOH=0.000;IOD=-0.004;AOI=-207.027;AOZ=-200.886;ABE=0.715;ABZ=28.773;BCS=-3731.318;FIC=0.079;LQR=0.014;MQ0=0.000;MQ10=0.154;MQ20=0.263;MQ30=0.672;MENDEL=3;SVM=-0.34155713;AN=710;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	61499	rs75719746	G	A	0.0	SVM	NS=222;AF=0.550;AC=245;s50=0.47;LBS=139,155,7,1,169,106,6,4;OBS=1235,2818,0,0,2298,4458,1,0;STR=0.037;STZ=3.799;CBR=-0.079;CBZ=-8.224;QBR=-0.117;QBZ=-12.167;MBR=-0.464;MSR=0.019;MBZ=-48.219;IOR=0.017;IOZ=-7.676;IOH=0.000;IOD=-0.000;AOI=-621.051;AOZ=-613.376;ABE=0.675;ABZ=36.362;BCS=-15549.747;FIC=-0.260;LQR=0.050;MQ0=0.000;MQ10=0.184;MQ20=0.295;MQ30=0.726;MENDEL=3;SVM=-0.70722255;AN=444;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	61706	.	G	C	0.0	SVM	NS=355;AF=0.007;AC=5;s50=0.75;LBS=1,0,5,3,36,35,0,1;OBS=1,0,385,258,3674,2313,1,0;STR=0.009;STZ=0.744;CBR=0.006;CBZ=0.515;QBR=0.049;QBZ=3.964;MBR=-0.161;MSR=0.029;MBZ=-13.122;IOR=0.062;IOZ=-5.504;IOH=0.000;IOD=-0.000;AOI=-140.812;AOZ=-135.308;ABE=0.575;ABZ=7.324;BCS=-2433.754;FIC=-5.106;LQR=0.012;MQ0=0.000;MQ10=0.657;MQ20=0.723;MQ30=0.872;MENDEL=0;SVM=-2.0946237;AN=710;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	61736	.	A	C	0.0	SVM	NS=207;AF=0.005;AC=2;s50=0.46;LBS=84,124,18,4,4,4,4,1;OBS=3950,3406,1618,1240,0,1,1,2;STR=-0.026;STZ=-2.655;CBR=0.007;CBZ=0.665;QBR=0.178;QBZ=17.941;MBR=-0.294;MSR=0.049;MBZ=-29.690;IOR=0.088;IOZ=-6.461;IOH=0.000;IOD=-0.000;AOI=-517.240;AOZ=-510.779;ABE=0.540;ABZ=8.399;BCS=-11846.345;FIC=-29.356;LQR=0.022;MQ0=0.000;MQ10=0.736;MQ20=0.787;MQ30=0.909;MENDEL=0;SVM=-2.4379372;AN=414;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	61851	rs147552651	T	A	0.0	SVM	NS=60;AF=0.125;AC=15;s50=0.12;LBS=88,285,17,21,7,23,191,295;OBS=2117,1876,1,3,1,6,2053,2231;STR=-0.051;STZ=-4.632;CBR=-0.031;CBZ=-2.852;QBR=-0.007;QBZ=-0.601;MBR=-0.515;MSR=0.030;MBZ=-46.824;IOR=0.172;IOZ=-7.271;IOH=0.001;IOD=-0.000;AOI=-640.294;AOZ=-633.023;ABE=0.532;ABZ=6.321;BCS=-16065.961;FIC=-2.102;LQR=0.094;MQ0=0.000;MQ10=0.298;MQ20=0.460;MQ30=0.781;MENDEL=1;SVM=-2.0321897;AN=120;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	61920	rs62637820	G	A	0.0	PASS	NS=437;AF=0.002;AC=2;s50=0.94;LBS=6,12,2,1,78,104,5,8;OBS=58,108,0,0,1519,1889,0,0;STR=0.041;STZ=2.424;CBR=-0.034;CBZ=-2.062;QBR=-0.011;QBZ=-0.672;MBR=0.103;MSR=0.128;MBZ=6.176;IOR=0.000;IOZ=-4.947;IOH=0.000;IOD=0.000;AOI=-43.986;AOZ=-39.039;ABE=0.506;ABZ=0.288;BCS=-560.628;FIC=-6.833;LQR=0.053;MQ0=0.000;MQ10=0.317;MQ20=0.468;MQ30=0.771;MENDEL=0;SVM=0.86347231;AN=874;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	61987	rs76735897	A	G	0.0	SVM	NS=200;AF=0.241;AC=88;s50=0.35;LBS=180,234,35,4,210,124,32,3;OBS=3382,5529,6,3,1331,2422,1,7;STR=0.023;STZ=2.643;CBR=0.024;CBZ=2.738;QBR=-0.067;QBZ=-7.593;MBR=0.298;MSR=-0.011;MBZ=33.547;IOR=0.165;IOZ=-9.267;IOH=0.001;IOD=-0.000;AOI=-476.687;AOZ=-467.421;ABE=0.675;ABZ=46.991;BCS=-12091.630;FIC=-0.816;LQR=0.056;MQ0=0.000;MQ10=0.565;MQ20=0.619;MQ30=0.758;MENDEL=0;SVM=-1.2498279;AN=400;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	62083	.	G	A	0.0	SVM	NS=404;AF=0.001;AC=1;s50=0.85;LBS=4,119,1,0,49,20,1,3;OBS=4,291,0,0,896,1247,1,0;STR=0.273;STZ=13.460;CBR=-0.411;CBZ=-20.315;QBR=-0.351;QBZ=-17.354;MBR=0.550;MSR=0.219;MBZ=27.151;IOR=0.058;IOZ=-4.045;IOH=0.000;IOD=-0.000;AOI=-88.505;AOZ=-84.460;ABE=0.616;ABZ=8.437;BCS=-605.049;FIC=-43.400;LQR=0.073;MQ0=0.000;MQ10=0.548;MQ20=0.645;MQ30=0.848;MENDEL=0;SVM=-1.0984078;AN=808;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	62157	rs10399597	G	A	0.0	PASS	NS=454;AF=0.001;AC=1;s50=0.98;LBS=19,6,22,2,427,552,21,2;OBS=19,35,4,1,4849,6675,4,0;STZ=0.009;STZ=0.993;CBZ=0.002;CBZ=0.261;QBZ=-0.027;QBZ=-2.924;MBR=0.062;MSR=0.052;MBZ=6.703;IOZ=0.113;IOH=-8.421;IOD=0.000;IOD=-0.001;AOZ=-15.209;AOZ=-6.788;ABZ=0.694;ABZ=6.352;BCS=-54.623;FIC=-2.131;LQR=0.080;MQ10=0.000;MQ10=0.634;MQ20=0.707;MQ30=0.898;MENDEL=0;SVM=0.31825495;AN=908;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	62162	rs140556834	G	A	0.0	PASS	NS=449;AF=0.002;AC=2;s50=0.97;LBS=2,5,3,0,162,169,7,2;OBS=36,51,0,1,4430,5954,0,2;STR=0.002;STZ=0.224;CBR=0.010;CBZ=1.023;QBR=-0.020;QBZ=-2.018;MBR=0.120;MSR=-0.007;MBZ=12.266;IOR=0.047;IOZ=-7.811;IOH=0.000;IOD=-0.000;AOI=-20.511;AOZ=-12.700;ABE=0.667;ABZ=7.203;BCS=-171.101;FIC=-1.111;LQR=0.031;MQ0=0.000;MQ10=0.615;MQ20=0.686;MQ30=0.861;MENDEL=0;SVM=0.63068981;AN=898;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	62180	.	T	G	0.0	PASS	NS=393;AF=0.174;AC=138;s50=0.85;LBS=5,10,10,16,22,25,179,181;OBS=2,9,2,1,862,1341,3012,5244;STR=-0.022;STZ=-2.288;CBR=-0.010;CBZ=-1.008;QBR=0.109;QBZ=11.116;MBR=-0.656;MSR=0.004;MBZ=-67.044;IOR=0.207;IOZ=-7.289;IOH=0.001;IOD=-0.000;AOI=-352.638;AOZ=-345.349;ABE=0.619;ABZ=19.369;BCS=-9132.271;FIC=0.027;LQR=0.037;MQ0=0.000;MQ10=0.244;MQ20=0.339;MQ30=0.586;MENDEL=6;SVM=0.0042566896;AN=786;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	62190	.	A	C	0.0	SVM	NS=312;AF=0.222;AC=139;s50=0.67;LBS=197,657,35,51,8,30,15,31;OBS=4023,4750,854,1358,2,2,1,5;STR=0.058;STZ=6.129;CBR=0.076;CBZ=7.934;QBR=0.041;QBZ=4.246;MBR=-0.638;MSR=-0.045;MBZ=-66.863;IOR=0.146;IOZ=-7.636;IOH=0.001;IOD=0.001;AOI=-340.988;AOZ=-333.351;ABE=0.573;ABZ=12.045;BCS=-9410.068;FIC=0.137;LQR=0.079;MQ0=0.000;MQ10=0.237;MQ20=0.343;MQ30=0.560;MENDEL=5;SVM=-0.52825409;AN=624;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	62203	rs28402963	T	C	0.0	SVM	NS=212;AF=0.602;AC=253;s50=0.44;LBS=9,10,110,202,7,10,270,300;OBS=0,1,2972,4701,0,0,2505,3688;STZ=0.017;STZ=2.055;CBZ=-0.063;CBZ=-7.435;QBZ=0.151;QBZ=17.767;MBR=-0.446;MSR=-0.054;MBZ=-52.503;IOZ=0.013;IOH=-8.857;IOD=0.000;IOD=0.000;AOZ=-1014.755;AOZ=-1005.898;ABZ=0.527;ABZ=6.754;BCS=-34906.183;FIC=-0.446;LQR=0.060;MQ10=0.000;MQ10=0.263;MQ20=0.381;MQ30=0.670;MENDEL=3;SVM=-0.99354255;AN=424;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	62426	.	G	A	0.0	PASS	NS=308;AF=0.150;AC=93;s50=0.66;LBS=46,16,10,0,335,67,7,2;OBS=209,352,1,0,2984,3606,2,0;STR=0.043;STZ=3.663;CBR=-0.004;CBZ=-0.379;QBR=-0.124;QBZ=-10.506;MBR=-0.370;MSR=0.006;MBZ=-31.273;IOR=0.075;IOZ=-6.106;IOH=0.000;IOD=-0.000;AOI=-112.141;AOZ=-106.035;ABE=0.689;ABZ=15.826;BCS=-681.982;FIC=0.022;LQR=0.061;MQ0=0.000;MQ10=0.094;MQ20=0.223;MQ30=0.703;MENDEL=5;SVM=0.30936242;AN=616;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	62553	.	T	A	0.0	SVM	NS=419;AF=0.001;AC=1;s50=0.90;LBS=3,5,5,17,4,4,159,171;OBS=5,13,1,2,0,3,4377,8699;STR=0.004;STZ=0.418;CBR=0.019;CBZ=2.175;QBR=-0.009;QBZ=-1.034;MBR=-0.017;MSR=0.010;MBZ=-1.917;IOR=0.092;IOZ=-7.697;IOH=0.000;IOD=-0.000;AOI=-9.950;AOZ=-2.254;ABE=0.705;ABZ=3.848;BCS=11.537;FIC=-0.037;LQR=0.025;MQ0=0.000;MQ10=0.526;MQ20=0.601;MQ30=0.853;MENDEL=0;SVM=-1.0806681;AN=838;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	62578	rs138341081	G	A	0.0	SVM	NS=160;AF=0.571;AC=185;s50=0.34;LBS=137,208,8,5,174,228,11,14;OBS=1322,2411,2,0,2722,4388,0,2;STR=0.028;STZ=2.934;CBR=-0.056;CBZ=-5.790;QBR=-0.224;QBZ=-23.332;MBR=-0.526;MSR=0.015;MBZ=-54.736;IOR=0.065;IOZ=-7.596;IOH=0.000;IOD=-0.000;AOI=-576.542;AOZ=-568.946;ABE=0.695;ABZ=43.910;BCS=-13429.371;FIC=-0.340;LQR=0.064;MQ0=0.000;MQ10=0.229;MQ20=0.345;MQ30=0.800;MENDEL=2;SVM=-1.0945298;AN=320;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	62707	.	G	C	0.0	SVM	NS=249;AF=0.105;AC=51;s50=0.53;LBS=1,9,15,99,101,168,1,2;OBS=2,4,644,1071,4814,6535,1,0;STR=0.033;STZ=3.804;CBR=-0.072;CBZ=-8.255;QBR=-0.148;QBZ=-16.968;MBR=-0.261;MSR=0.012;MBZ=-29.793;IOR=0.097;IOZ=-8.057;IOH=0.000;IOD=-0.000;AOI=-253.717;AOZ=-245.660;ABE=0.718;ABZ=33.696;BCS=-3424.839;FIC=-0.906;LQR=0.028;MQ0=0.000;MQ10=0.078;MQ20=0.205;MQ30=0.772;MENDEL=2;SVM=-0.32106861;AN=498;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	62738	rs149632189	T	C	0.0	PASS	NS=340;AF=0.004;AC=1;s50=0.73;LBS=2,19,16,126,1,9,97,237;OBS=1,1,1187,1584,0,1,2084,2584;STR=0.018;STZ=1.518;CBR=0.042;CBZ=3.646;QBR=0.193;QBZ=16.665;MBR=0.177;MSR=0.047;MBZ=15.234;IOR=0.057;IOZ=-7.032;IOH=0.000;IOD=-0.000;AOI=-463.861;AOZ=-456.829;ABE=0.428;ABZ=-13.256;BCS=-11519.869;FIC=-32.618;LQR=0.060;MQ0=0.000;MQ10=0.085;MQ20=0.208;MQ30=0.751;MENDEL=0;SVM=0.30536643;AN=680;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	62777	rs146072460	A	T	0.0	PASS	NS=157;AF=0.003;AC=1;s50=0.34;LBS=50,39,2,0,1,0,78,90;OBS=1133,2006,0,1,2,2,2302,5092;STR=0.048;STZ=4.970;CBR=-0.001;CBZ=-0.087;QBR=0.029;QBZ=3.027;MBR=0.224;MSR=0.031;MBZ=23.021;IOR=0.085;IOZ=-7.335;IOH=0.001;IOD=0.000;AOI=-1173.103;AOZ=-1165.768;ABE=0.287;ABZ=-54.285;BCS=-33007.855;FIC=-100.350;LQR=0.024;MQ0=0.000;MQ10=0.117;MQ20=0.245;MQ30=0.882;MENDEL=0;SVM=0.094469151;AN=314;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	62925	.	G	C	0.0	SVM	NS=124;AF=0.050;AC=11;s50=0.27;LBS=11,4,81,83,204,372,11,17;OBS=1,3,1266,3414,3197,7765,5,34;STR=0.021;STZ=2.676;CBR=0.073;CBZ=9.130;QBR=0.081;QBZ=10.143;MBR=-0.242;MSR=0.016;MBZ=-30.317;IOR=0.345;IOZ=-9.023;IOH=0.001;IOD=-0.002;AOI=-603.553;AOZ=-594.530;ABE=0.651;ABZ=42.389;BCS=-17044.637;FIC=-5.892;LQR=0.045;MQ0=0.000;MQ10=0.122;MQ20=0.250;MQ30=0.820;MENDEL=0;SVM=-1.0933342;AN=248;EFF=UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|)
1	63074	.	A	C	0.0	SVM	NS=227;AF=0.623;AC=284;s50=0.48;LBS=86,219,24,29,1,2,6,2;OBS=3134,4848,1519,3125,2,0,2,3;STR=0.065;STZ=7.359;CBR=-0.000;CBZ=-0.047;QBR=0.129;QBZ=14.449;MBR=-0.576;MSR=-0.021;MBZ=-64.715;IOR=0.100;IOZ=-7.954;IOH=0.000;IOD=-0.000;AOI=-681.365;AOZ=-673.411;ABE=0.669;ABZ=42.475;BCS=-18962.032;FIC=-0.392;LQR=0.028;MQ0=0.000;MQ10=0.278;MQ20=0.395;MQ30=0.863;MENDEL=3;SVM=-1.3100802;AN=454;EFF=TRANSCRIPT(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	63239	.	C	T	0.0	SVM	NS=153;AF=0.541;AC=168;s50=0.32;LBS=8,6,148,319,2,26,115,145;OBS=0,3,4690,5860,1,2,2479,3632;STR=0.038;STZ=4.885;CBR=0.016;CBZ=2.006;QBR=-0.019;QBZ=-2.408;MBR=-0.231;MSR=0.038;MBZ=-29.824;IOR=0.066;IOZ=-9.207;IOH=0.000;IOD=-0.000;AOI=-777.818;AOZ=-768.611;ABE=0.684;ABZ=52.729;BCS=-24799.760;FIC=-0.177;LQR=0.042;MQ0=0.000;MQ10=0.148;MQ20=0.290;MQ30=0.829;MENDEL=0;SVM=-0.81740199;AN=306;EFF=TRANSCRIPT(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	63268	rs75478250	T	C	0.0	SVM	NS=103;AF=0.859;AC=158;s50=0.18;LBS=2,12,90,145,3,9,128,106;OBS=2,22,2662,2441,4,5,1819,1638;STR=0.004;STZ=0.411;CBR=0.005;CBZ=0.483;QBR=-0.027;QBZ=-2.511;MBR=-0.426;MSR=0.020;MBZ=-39.397;IOR=0.401;IOZ=-6.922;IOH=0.004;IOD=0.000;AOI=-831.257;AOZ=-824.335;ABE=0.581;ABZ=15.381;BCS=-23326.109;FIC=-1.091;LQR=0.052;MQ0=0.000;MQ10=0.205;MQ20=0.342;MQ30=0.826;MENDEL=0;SVM=-1.6585768;AN=206;EFF=TRANSCRIPT(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	63304	.	C	A	0.0	SVM	NS=168;AF=0.017;AC=6;s50=0.36;LBS=4,20,13,63,1,1,1,4;OBS=2191,1554,3784,3014,0,0,0,0;STR=-0.027;STZ=-2.816;CBR=0.022;CBZ=2.232;QBR=0.080;QBZ=8.198;MBR=-0.391;MSR=0.062;MBZ=-40.145;IOR=0.000;IOZ=-6.824;IOH=0.000;IOD=0.000;AOI=-643.985;AOZ=-637.161;ABE=0.503;ABZ=0.585;BCS=-15856.024;FIC=-11.630;LQR=0.009;MQ0=0.000;MQ10=0.714;MQ20=0.767;MQ30=0.935;MENDEL=0;SVM=-2.2614817;AN=336;EFF=TRANSCRIPT(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	63527	rs146329971	T	C	0.0	SVM	NS=22;AF=0.070;AC=3;s50=0.04;LBS=7,4,243,139,5,3,81,61;OBS=1,2,8086,7680,1,4,6374,5504;STR=0.024;STZ=3.913;CBR=0.025;CBZ=4.127;QBR=-0.079;QBZ=-13.109;MBR=0.142;MSR=-0.000;MBZ=23.658;IOR=0.065;IOZ=-10.714;IOH=0.000;IOD=-0.000;AOI=-1709.398;AOZ=-1698.684;ABE=0.437;ABZ=-26.382;BCS=-69725.196;FIC=-5.932;LQR=0.019;MQ0=0.000;MQ10=0.768;MQ20=0.807;MQ30=0.957;MENDEL=0;SVM=-1.9854185;AN=44;EFF=TRANSCRIPT(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	63670	.	C	A	0.0	SVM	NS=177;AF=0.282;AC=100;s50=0.37;LBS=81,20,605,401,24,4,33,4;OBS=453,800,4817,9064,5,0,9,0;STR=-0.008;STZ=-1.040;CBR=0.034;CBZ=4.239;QBR=-0.001;QBZ=-0.064;MBR=-0.400;MSR=0.055;MBZ=-49.153;IOR=0.125;IOZ=-9.922;IOH=0.000;IOD=-0.001;AOI=-155.065;AOZ=-145.143;ABE=0.735;ABZ=33.129;BCS=-2908.214;FIC=0.250;LQR=0.068;MQ0=0.000;MQ10=0.124;MQ20=0.290;MQ30=0.711;MENDEL=0;SVM=-0.7303502;AN=354;EFF=TRANSCRIPT(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	63671	rs116440577	G	A	0.0	SVM	NS=189;AF=0.003;AC=1;s50=0.40;LBS=192,69,42,4,302,259,29,5;OBS=1075,2355,5,2,4143,7299,6,4;STZ=0.043;STZ=5.235;CBZ=-0.013;CBZ=-1.596;QBZ=-0.015;QBZ=-1.794;MBR=0.381;MSR=0.062;MBZ=46.407;IOZ=0.166;IOH=-9.220;IOD=0.002;IOD=0.001;AOZ=-436.588;AOZ=-427.368;ABZ=0.537;ABZ=8.521;BCS=-12923.370;FIC=-50.742;LQR=0.052;MQ10=0.000;MQ10=0.149;MQ20=0.313;MQ30=0.716;MENDEL=0;SVM=-0.2754807;AN=378;EFF=TRANSCRIPT(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	63697	.	T	C	0.0	SVM	NS=213;AF=0.002;AC=1;s50=0.45;LBS=0,1,81,81,7,0,109,52;OBS=0,2,2097,4745,4,0,2405,5125;STR=0.014;STZ=1.665;CBR=0.073;CBZ=8.719;QBR=0.025;QBZ=2.995;MBR=0.459;MSR=0.026;MBZ=55.052;IOR=0.076;IOZ=-8.559;IOH=0.000;IOD=0.000;AOI=-935.249;AOZ=-926.690;ABE=0.405;ABZ=-26.786;BCS=-29828.503;FIC=-125.673;LQR=0.022;MQ0=0.000;MQ10=0.247;MQ20=0.380;MQ30=0.814;MENDEL=0;SVM=-0.24927575;AN=426;EFF=TRANSCRIPT(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	63792	rs142167745	G	T	0.0	SVM	NS=330;AF=0.817;AC=534;s50=0.70;LBS=8,6,10,6,108,274,74,91;OBS=0,1,0,4,1856,3087,1502,3222;STR=0.060;STZ=5.937;CBR=-0.043;CBZ=-4.202;QBR=0.091;QBZ=8.940;MBR=-0.674;MSR=-0.066;MBZ=-66.247;IOR=0.101;IOZ=-6.655;IOH=0.000;IOD=-0.000;AOI=-826.059;AOZ=-819.404;ABE=0.671;ABZ=38.459;BCS=-21603.935;FIC=-0.658;LQR=0.054;MQ0=0.000;MQ10=0.402;MQ20=0.495;MQ30=0.899;MENDEL=0;SVM=-1.2517619;AN=660;EFF=TRANSCRIPT(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	63880	.	C	T	0.0	SVM	NS=325;AF=0.001;AC=1;s50=0.69;LBS=4,12,88,137,0,9,4,8;OBS=0,4,4496,3485,0,2,1031,838;STR=0.009;STZ=0.920;CBR=0.001;CBZ=0.136;QBR=0.141;QBZ=13.981;MBR=-0.226;MSR=0.002;MBZ=-22.421;IOR=0.132;IOZ=-6.267;IOH=0.000;IOD=-0.000;AOI=-348.329;AOZ=-342.063;ABE=0.543;ABZ=7.350;BCS=-7718.970;FIC=-76.385;LQR=0.023;MQ0=0.000;MQ10=0.750;MQ20=0.794;MQ30=0.961;MENDEL=0;SVM=-2.3699693;AN=650;EFF=TRANSCRIPT(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	64125	.	C	T	0.0	SVM	NS=245;AF=0.562;AC=274;s50=0.51;LBS=2,2,108,109,1,1,10,10;OBS=0,1,3090,3612,1,2,499,633;STR=0.014;STZ=1.262;CBR=0.037;CBZ=3.277;QBR=0.052;QBZ=4.620;MBR=-0.418;MSR=0.034;MBZ=-36.969;IOR=0.097;IOZ=-6.106;IOH=0.000;IOD=-0.000;AOI=-220.176;AOZ=-214.070;ABE=0.716;ABZ=28.589;BCS=-2750.759;FIC=0.228;LQR=0.029;MQ0=0.000;MQ10=0.135;MQ20=0.276;MQ30=0.807;MENDEL=3;SVM=-0.79424166;AN=490;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	64548	.	A	C	0.0	SVM	NS=151;AF=0.006;AC=2;s50=0.32;LBS=159,125,130,118,20,12,15,8;OBS=4248,1812,4810,2080,8,2,16,2;STR=0.003;STZ=0.356;CBR=-0.005;CBZ=-0.535;QBR=0.107;QBZ=12.200;MBR=0.663;MSR=0.010;MBZ=75.443;IOR=0.306;IOZ=-7.918;IOH=0.002;IOD=-0.000;AOI=-996.993;AOZ=-989.076;ABE=0.421;ABZ=-22.780;BCS=-30139.352;FIC=-54.911;LQR=0.039;MQ0=0.000;MQ10=0.380;MQ20=0.489;MQ30=0.716;MENDEL=0;SVM=-0.28489182;AN=302;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	64552	.	G	A	0.0	SVM	NS=157;AF=0.006;AC=2;s50=0.34;LBS=235,161,18,7,81,69,10,11;OBS=3955,1808,6,0,4108,1846,6,2;STR=0.004;STZ=0.430;CBR=-0.025;CBZ=-2.759;QBR=-0.026;QBZ=-2.819;MBR=0.681;MSR=-0.004;MBZ=73.760;IOR=0.199;IOZ=-7.503;IOH=0.001;IOD=-0.000;AOI=-890.319;AOZ=-882.816;ABE=0.460;ABZ=-10.955;BCS=-24092.507;FIC=-54.390;LQR=0.045;MQ0=0.000;MQ10=0.409;MQ20=0.510;MQ30=0.709;MENDEL=0;SVM=-0.42355126;AN=314;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	64832	.	C	T	0.0	SVM	NS=394;AF=0.006;AC=5;s50=0.84;LBS=0,1,112,37,2,1,7,3;OBS=2,1,5459,3616,0,1,506,347;STZ=0.005;STZ=0.481;CBZ=0.000;CBZ=0.011;QBZ=0.066;QBZ=6.550;MBR=-0.188;MSR=0.005;MBZ=-18.756;IOZ=0.071;IOH=-7.227;IOD=0.000;IOD=-0.000;AOZ=-143.657;AOZ=-136.431;ABZ=0.532;ABZ=3.009;BCS=-3326.599;FIC=-3.982;LQR=0.016;MQ10=0.000;MQ10=0.623;MQ20=0.706;MQ30=0.901;MENDEL=0;SVM=-1.6562066;AN=788;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	64856	.	T	A	0.0	SVM	NS=242;AF=0.046;AC=23;s50=0.51;LBS=18,23,1,2,1,8,173,150;OBS=2420,2192,0,0,2,1,3609,3626;STR=-0.025;STZ=-2.748;CBR=0.030;CBZ=3.311;QBR=0.126;QBZ=13.701;MBR=-0.439;MSR=-0.055;MBZ=-47.742;IOR=0.048;IOZ=-7.750;IOH=0.000;IOD=0.000;AOI=-697.563;AOZ=-689.813;ABE=0.471;ABZ=-7.311;BCS=-19863.687;FIC=-3.287;LQR=0.030;MQ0=0.000;MQ10=0.705;MQ20=0.771;MQ30=0.935;MENDEL=0;SVM=-1.8589198;AN=484;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	64976	.	C	T	0.0	SVM	NS=207;AF=0.817;AC=336;s50=0.43;LBS=1,1,139,78,2,6,91,23;OBS=1,1,3523,3343,0,1,2071,1501;STR=-0.063;STZ=-6.479;CBR=-0.002;CBZ=-0.172;QBR=-0.022;QBZ=-2.253;MBR=-0.311;MSR=-0.040;MBZ=-31.790;IOR=0.056;IOZ=-7.151;IOH=0.000;IOD=-0.000;AOI=-585.690;AOZ=-578.540;ABE=0.721;ABZ=51.400;BCS=-13685.354;FIC=-1.066;LQR=0.031;MQ0=0.000;MQ10=0.220;MQ20=0.357;MQ30=0.842;MENDEL=0;SVM=-1.2617912;AN=414;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	65797	.	T	C	0.0	SVM	NS=159;AF=0.003;AC=1;s50=0.35;LBS=3,14,115,252,2,11,100,395;OBS=0,10,2488,3519,0,8,7580,7860;STR=0.069;STZ=10.112;CBR=0.057;CBZ=8.379;QBR=-0.184;QBZ=-26.976;MBR=0.705;MSR=0.070;MBZ=103.210;IOR=0.130;IOZ=-10.970;IOH=0.001;IOD=0.000;AOI=-640.628;AOZ=-629.659;ABE=0.703;ABZ=77.802;BCS=-17630.867;FIC=-107.080;LQR=0.039;MQ0=0.000;MQ10=0.668;MQ20=0.734;MQ30=0.929;MENDEL=0;SVM=-1.4090272;AN=318;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	66008	rs2691286	C	G	0.0	SVM	NS=269;AF=0.464;AC=252;s50=0.56;LBS=2,1,126,71,32,8,4,0;OBS=1,0,3457,2436,7997,5402,0,0;STR=-0.010;STZ=-1.331;CBR=0.010;CBZ=1.352;QBR=0.242;QBZ=33.576;MBR=-0.901;MSR=-0.006;MBZ=-125.122;IOR=0.013;IOZ=-8.684;IOH=0.000;IOD=-0.000;AOI=-1797.584;AOZ=-1788.901;ABE=0.386;ABZ=-33.728;BCS=-66840.034;FIC=-0.225;LQR=0.012;MQ0=0.000;MQ10=0.689;MQ20=0.731;MQ30=0.936;MENDEL=2;SVM=-1.0280053;AN=538;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	66131	.	C	G	0.0	SVM	NS=288;AF=0.242;AC=142;s50=0.61;LBS=4,5,103,103,4,5,1,7;OBS=0,1,3730,4851,4649,5441,1,1;STR=-0.026;STZ=-3.569;CBR=-0.029;CBZ=-3.911;QBR=0.196;QBZ=26.840;MBR=-0.830;MSR=0.024;MBZ=-113.345;IOR=0.041;IOZ=-8.393;IOH=0.000;IOD=-0.000;AOI=-1400.025;AOZ=-1391.632;ABE=0.330;ABZ=-49.655;BCS=-49240.014;FIC=-0.142;LQR=0.011;MQ0=0.000;MQ10=0.573;MQ20=0.634;MQ30=0.866;MENDEL=0;SVM=-0.97567655;AN=576;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	66737	.	G	A	0.0	SVM	NS=140;AF=0.018;AC=5;s50=0.29;LBS=5,10,1,2,26,60,3,2;OBS=74,66,2,1,483,565,2,3;STZ=-0.044;STZ=-1.506;CBZ=-0.015;CBZ=-0.522;QBZ=-0.110;QBZ=-3.800;MBR=-0.214;MSR=0.053;MBZ=-7.376;IOZ=0.547;IOH=-2.564;IOD=0.000;IOD=-0.007;AOZ=-63.231;AOZ=-60.667;ABZ=0.474;ABZ=-1.013;BCS=-246.086;FIC=-2.675;LQR=0.078;MQ10=0.000;MQ10=0.091;MQ20=0.227;MQ30=0.819;MENDEL=0;SVM=-0.88976069;AN=280;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	66795	.	T	A	0.0	SVM	NS=60;AF=0.040;AC=5;s50=0.13;LBS=33,19,3,2,4,2,72,27;OBS=431,419,0,1,1,0,561,667;STR=-0.049;STZ=-2.251;CBR=-0.053;CBZ=-2.413;QBR=-0.063;QBZ=-2.882;MBR=-0.533;MSR=0.089;MBZ=-24.301;IOR=0.161;IOZ=-3.235;IOH=0.000;IOD=-0.001;AOI=-306.953;AOZ=-303.718;ABE=0.366;ABZ=-10.595;BCS=-3320.800;FIC=-3.932;LQR=0.068;MQ0=0.000;MQ10=0.430;MQ20=0.527;MQ30=0.792;MENDEL=0;SVM=-2.0826216;AN=120;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	66876	.	T	G	0.0	SVM	NS=312;AF=0.005;AC=3;s50=0.67;LBS=3,1,2,5,18,47,67,62;OBS=0,1,0,0,647,511,1356,1100;STR=-0.006;STZ=-0.371;CBR=0.022;CBZ=1.353;QBR=0.026;QBZ=1.580;MBR=0.466;MSR=0.005;MBZ=28.001;IOR=0.046;IOZ=-4.582;IOH=0.000;IOD=-0.000;AOI=-297.380;AOZ=-292.797;ABE=0.389;ABZ=-12.562;BCS=-4517.491;FIC=-24.696;LQR=0.051;MQ0=0.000;MQ10=0.362;MQ20=0.469;MQ30=0.874;MENDEL=0;SVM=-0.00028748781;AN=624;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	67181	rs77662731	A	G	0.0	SVM	NS=293;AF=0.002;AC=1;s50=0.62;LBS=289,210,15,2,23,3,22,3;OBS=3731,4738,0,0,104,121,4,0;STR=-0.007;STZ=-0.652;CBR=-0.018;CBZ=-1.678;QBR=-0.006;QBZ=-0.589;MBR=0.181;MSR=0.018;MBZ=16.910;IOR=0.072;IOZ=-7.200;IOH=0.000;IOD=-0.000;AOI=-43.111;AOZ=-35.911;ABE=0.584;ABZ=5.337;BCS=-747.466;FIC=-5.252;LQR=0.057;MQ0=0.000;MQ10=0.372;MQ20=0.476;MQ30=0.874;MENDEL=0;SVM=-0.52262621;AN=586;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	67184	.	G	A	0.0	SVM	NS=278;AF=0.516;AC=287;s50=0.58;LBS=25,12,13,1,424,61,7,1;OBS=1114,1922,1,0,2883,3732,1,0;STR=0.065;STZ=6.378;CBR=0.012;CBZ=1.132;QBR=0.189;QBZ=18.587;MBR=-0.717;MSR=-0.027;MBZ=-70.413;IOR=0.045;IOZ=-6.567;IOH=0.000;IOD=0.000;AOI=-542.613;AOZ=-536.046;ABE=0.722;ABZ=40.323;BCS=-12269.704;FIC=-0.032;LQR=0.051;MQ0=0.000;MQ10=0.317;MQ20=0.411;MQ30=0.868;MENDEL=3;SVM=-1.4179749;AN=556;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	67223	rs78676975	C	A	0.0	SVM	NS=252;AF=0.175;AC=84;s50=0.47;LBS=31,12,128,69,1,1,5,3;OBS=4669,4649,4610,5055,1,0,4,1;STR=-0.024;STZ=-3.320;CBR=0.029;CBZ=3.979;QBR=0.120;QBZ=16.596;MBR=-0.500;MSR=0.032;MBZ=-68.915;IOR=0.072;IOZ=-8.792;IOH=0.000;IOD=-0.000;AOI=-1234.561;AOZ=-1225.769;ABE=0.385;ABZ=-36.659;BCS=-43139.517;FIC=-0.559;LQR=0.012;MQ0=0.000;MQ10=0.749;MQ20=0.792;MQ30=0.933;MENDEL=1;SVM=-1.3343839;AN=504;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	67232	.	C	A	0.0	SVM	NS=322;AF=0.002;AC=1;s50=0.69;LBS=2,31,110,611,2,49,0,29;OBS=40,28,8571,6793,1,9,1,3;STR=-0.004;STZ=-0.486;CBR=-0.017;CBZ=-2.091;QBR=-0.009;QBZ=-1.134;MBR=0.099;MSR=-0.040;MBZ=12.266;IOR=0.156;IOZ=-8.701;IOH=0.000;IOD=-0.001;AOI=-16.787;AOZ=-8.087;ABE=0.461;ABZ=-1.207;BCS=-227.967;FIC=-0.065;LQR=0.047;MQ0=0.000;MQ10=0.619;MQ20=0.682;MQ30=0.909;MENDEL=0;SVM=-1.8434027;AN=644;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	67242	.	A	C	0.0	SVM	NS=227;AF=0.577;AC=265;s50=0.48;LBS=202,574,69,338,6,28,4,17;OBS=4930,3715,4255,4748,2,4,0,2;STZ=0.098;STZ=12.979;CBZ=0.010;CBZ=1.385;QBZ=0.074;QBZ=9.873;MBR=-0.763;MSR=-0.079;MBZ=-101.330;IOZ=0.082;IOH=-9.441;IOD=0.000;IOD=-0.000;AOZ=-1112.052;AOZ=-1102.610;ABZ=0.631;ABZ=32.318;BCS=-40983.823;FIC=-0.245;LQR=0.063;MQ10=0.000;MQ10=0.482;MQ20=0.558;MQ30=0.879;MENDEL=1;SVM=-1.5143556;AN=454;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	67580	.	T	A	0.0	PASS	NS=461;AF=0.004;AC=3;s50=0.99;LBS=6,5,4,3,1,5,131,144;OBS=82,92,0,2,0,2,4644,4007;STR=0.018;STZ=1.717;CBR=-0.003;CBZ=-0.254;QBR=0.027;QBZ=2.490;MBR=0.207;MSR=0.039;MBZ=19.413;IOR=0.075;IOZ=-7.020;IOH=0.000;IOD=-0.000;AOI=-35.328;AOZ=-28.308;ABE=0.672;ABZ=11.152;BCS=-538.216;FIC=-1.104;LQR=0.031;MQ0=0.000;MQ10=0.580;MQ20=0.648;MQ30=0.917;MENDEL=0;SVM=1.4326448;AN=922;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	67605	.	T	C	0.0	SVM	NS=356;AF=0.493;AC=355;s50=0.76;LBS=7,3,29,76,3,8,198,290;OBS=1,7,4484,7740,0,1,3016,4073;STZ=0.058;STZ=8.058;CBZ=0.009;CBZ=1.229;QBZ=0.200;QBZ=27.790;MBR=-0.849;MSR=-0.054;MBZ=-117.986;IOZ=0.099;IOH=-9.037;IOD=0.001;IOD=0.000;AOZ=-1567.035;AOZ=-1557.998;ABZ=0.501;ABZ=0.223;BCS=-59838.417;FIC=-0.132;LQR=0.030;MQ10=0.000;MQ10=0.631;MQ20=0.684;MQ30=0.897;MENDEL=5;SVM=-1.1527496;AN=712;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	68306	.	C	T	0.0	SVM	NS=418;AF=0.400;AC=336;s50=0.90;LBS=8,7,47,180,0,9,218,266;OBS=1,0,1455,3416,1,1,4389,11869;STR=0.027;STZ=3.938;CBR=0.017;CBZ=2.452;QBR=0.055;QBZ=8.031;MBR=-0.835;MSR=-0.018;MBZ=-121.437;IOR=0.030;IOZ=-9.858;IOH=0.002;IOD=0.002;AOI=-1921.953;AOZ=-1912.094;ABE=0.413;ABZ=-15.164;BCS=-81987.570;FIC=0.215;LQR=0.033;MQ0=0.000;MQ10=0.745;MQ20=0.776;MQ30=0.880;MENDEL=12;SVM=-0.86702177;AN=836;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	68316	.	T	C	0.0	SVM	NS=430;AF=0.360;AC=310;s50=0.92;LBS=0,1,38,69,1,0,42,54;OBS=0,1,3901,10401,3,0,1466,3398;STR=0.028;STZ=3.846;CBR=-0.010;CBZ=-1.329;QBR=0.079;QBZ=10.958;MBR=-0.874;MSR=-0.013;MBZ=-121.007;IOR=0.049;IOZ=-8.802;IOH=0.000;IOD=0.000;AOI=-1890.253;AOZ=-1881.451;ABE=0.386;ABZ=-16.923;BCS=-73218.773;FIC=0.338;LQR=0.010;MQ0=0.000;MQ10=0.754;MQ20=0.783;MQ30=0.880;MENDEL=12;SVM=-1.0589097;AN=860;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	68849	.	C	T	0.0	SVM	NS=219;AF=0.002;AC=1;s50=0.46;LBS=2,11,35,87,2,5,13,66;OBS=0,2,5127,3760,0,1,3234,1523;STR=-0.101;STZ=-11.759;CBR=0.015;CBZ=1.786;QBR=0.073;QBZ=8.477;MBR=-0.044;MSR=0.050;MBZ=-5.169;IOR=0.053;IOZ=-7.294;IOH=0.000;IOD=-0.000;AOI=-761.647;AOZ=-754.353;ABE=0.565;ABZ=15.447;BCS=-19334.294;FIC=-86.560;LQR=0.015;MQ0=0.000;MQ10=0.882;MQ20=0.908;MQ30=0.980;MENDEL=0;SVM=-2.6905153;AN=438;EFF=DOWNSTREAM(MODIFIER||||OR4G11P|unprocessed_pseudogene|NON_CODING|ENST00000492842|),INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	68889	.	C	T	0.0	SVM	NS=447;AF=0.001;AC=1;s50=0.96;LBS=12,48,346,728,1,67,11,64;OBS=1,3,10360,7312,0,2,28,25;STR=0.007;STZ=0.871;CBR=-0.015;CBZ=-2.051;QBR=-0.012;QBZ=-1.586;MBR=0.142;MSR=0.055;MBZ=18.864;IOR=0.061;IOZ=-9.645;IOH=0.000;IOD=-0.000;AOI=-15.651;AOZ=-6.005;ABE=0.615;ABZ=3.626;BCS=-66.769;FIC=-2.109;LQR=0.061;MQ0=0.000;MQ10=0.898;MQ20=0.924;MQ30=0.985;MENDEL=0;SVM=-0.64945476;AN=894;EFF=INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	68896	.	G	A	0.0	SVM	NS=384;AF=0.995;AC=572;s50=0.40;LBS=224,941,15,37,49,324,6,28;OBS=14509,11367,3,2,67,136,0,6;STR=-0.041;STZ=-6.585;CBR=0.021;CBZ=3.372;QBR=0.095;QBZ=15.274;MBR=-0.279;MSR=0.022;MBZ=-45.131;IOR=0.084;IOZ=-10.956;IOH=0.000;IOD=-0.000;AOI=-2742.490;AOZ=-2731.534;ABE=0.407;ABZ=-4.017;BCS=-143304.229;FIC=-0.042;LQR=0.056;MQ0=0.000;MQ10=0.940;MQ20=0.957;MQ30=0.993;MENDEL=6;SVM=-1.2814811;AN=768;EFF=INTRON(LOW||||OR4F5|protein_coding|CODING|ENST00000534990|),UPSTREAM(LOW||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	69134	.	A	G	0.0	SVM	NS=157;AF=0.086;AC=27;s50=0.33;LBS=68,133,3,14,14,101,0,10;OBS=5989,7960,0,2,4272,4336,0,0;STR=-0.065;STZ=-9.806;CBR=0.049;CBZ=7.395;QBR=0.071;QBZ=10.598;MBR=-0.213;MSR=0.037;MBZ=-32.057;IOR=0.024;IOZ=-8.957;IOH=0.000;IOD=-0.000;AOI=-1121.682;AOZ=-1112.724;ABE=0.532;ABZ=11.692;BCS=-37640.937;FIC=-2.436;LQR=0.014;MQ0=0.000;MQ10=0.856;MQ20=0.889;MQ30=0.977;MENDEL=0;SVM=-2.5453682;AN=314;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAa/gGa|E15G|OR4F5|protein_coding|CODING|ENST00000335137|exon_1_69091_70008),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|gAa/gGa|E63G|OR4F5|protein_coding|CODING|ENST00000534990|exon_1_69037_69829)
1	69453	rs142004627	G	A	0.0	SVM	NS=113;AF=0.613;AC=136;s50=0.25;LBS=115,106,4,2,267,781,0,5;OBS=3554,3742,12,16,3984,3944,2,1;STR=0.015;STZ=1.899;CBR=-0.024;CBZ=-2.927;QBR=0.122;QBZ=15.088;MBR=-0.450;MSR=-0.057;MBZ=-55.507;IOR=0.256;IOZ=-9.489;IOH=0.002;IOD=-0.001;AOI=-896.009;AOZ=-886.520;ABE=0.680;ABZ=48.633;BCS=-32412.615;FIC=-0.183;LQR=0.077;MQ0=0.000;MQ10=0.266;MQ20=0.439;MQ30=0.949;MENDEL=0;SVM=-1.7526862;AN=226;EFF=SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K121|OR4F5|protein_coding|CODING|ENST00000335137|exon_1_69091_70008),SYNONYMOUS_CODING(LOW|SILENT|aaG/aaA|K169|OR4F5|protein_coding|CODING|ENST00000534990|exon_1_69037_69829)
1	69496	rs150690004	G	A	0.0	PASS	NS=453;AF=0.001;AC=1;s50=0.98;LBS=13,10,1,4,43,68,7,9;OBS=68,161,0,0,1753,2323,0,2;STR=0.060;STZ=3.950;CBR=0.002;CBZ=0.105;QBR=-0.113;QBZ=-7.445;MBR=0.243;MSR=0.058;MBZ=15.975;IOR=0.078;IOZ=-4.872;IOH=0.000;IOD=-0.000;AOI=-59.162;AOZ=-54.290;ABE=0.343;ABZ=-8.050;BCS=-886.730;FIC=-9.400;LQR=0.030;MQ0=0.000;MQ10=0.603;MQ20=0.715;MQ30=0.955;MENDEL=0;SVM=0.39679099;AN=906;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ggc/Agc|G136S|OR4F5|protein_coding|CODING|ENST00000335137|exon_1_69091_70008),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ggc/Agc|G184S|OR4F5|protein_coding|CODING|ENST00000534990|exon_1_69037_69829)
1	69511	rs75062661	A	G	0.0	SVM	NS=445;AF=0.983;AC=875;s50=0.96;LBS=192,96,6,2,80,57,5,3;OBS=227,395,0,0,1361,1998,2,1;STZ=-0.030;STZ=-1.874;CBZ=-0.007;CBZ=-0.453;QBZ=0.215;QBZ=13.546;MBR=-0.486;MSR=0.070;MBZ=-30.656;IOZ=0.132;IOH=-4.430;IOD=0.001;IOD=0.000;AOZ=-876.707;AOZ=-872.278;ABZ=0.514;ABZ=0.957;BCS=-17740.515;FIC=-1.489;LQR=0.096;MQ10=0.000;MQ10=0.672;MQ20=0.773;MQ30=0.945;MENDEL=0;SVM=-0.84261818;AN=890;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aca/Gca|T141A|OR4F5|protein_coding|CODING|ENST00000335137|exon_1_69091_70008),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Aca/Gca|T189A|OR4F5|protein_coding|CODING|ENST00000534990|exon_1_69037_69829)
1	69552	rs55874132	G	C	0.0	SVM	NS=365;AF=0.661;AC=480;s50=0.78;LBS=2,1,60,43,117,112,3,2;OBS=2,2,1240,2671,1572,3333,1,3;STR=0.004;STZ=0.343;CBR=0.030;CBZ=2.775;QBR=0.138;QBZ=12.967;MBR=-0.576;MSR=0.075;MBZ=-54.061;IOR=0.163;IOZ=-6.409;IOH=0.001;IOD=-0.000;AOI=-710.307;AOZ=-703.899;ABE=0.697;ABZ=36.484;BCS=-17900.739;FIC=-0.022;LQR=0.036;MQ0=0.000;MQ10=0.271;MQ20=0.381;MQ30=0.700;MENDEL=4;SVM=-0.63485374;AN=730;EFF=SYNONYMOUS_CODING(LOW|SILENT|gcG/gcC|A154|OR4F5|protein_coding|CODING|ENST00000335137|exon_1_69091_70008),SYNONYMOUS_CODING(LOW|SILENT|gcG/gcC|A202|OR4F5|protein_coding|CODING|ENST00000534990|exon_1_69037_69829)
1	69569	.	T	C	0.0	SVM	NS=397;AF=0.538;AC=428;s50=0.85;LBS=2,1,13,16,2,2,134,112;OBS=0,4,942,1469,3,0,2479,5169;STR=-0.060;STZ=-6.019;CBR=0.033;CBZ=3.287;QBR=0.072;QBZ=7.174;MBR=-0.633;MSR=0.096;MBZ=-63.437;IOR=0.129;IOZ=-6.867;IOH=0.001;IOD=-0.000;AOI=-410.815;AOZ=-403.949;ABE=0.738;ABZ=44.943;BCS=-9002.979;FIC=0.125;LQR=0.027;MQ0=0.000;MQ10=0.243;MQ20=0.351;MQ30=0.718;MENDEL=2;SVM=-0.73586834;AN=794;EFF=NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cTc/cCc|L160P|OR4F5|protein_coding|CODING|ENST00000335137|exon_1_69091_70008),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|cTc/cCc|L208P|OR4F5|protein_coding|CODING|ENST00000534990|exon_1_69037_69829)
1	69897	.	T	C	0.0	SVM	NS=208;AF=0.009;AC=4;s50=0.45;LBS=4,6,113,201,3,5,128,150;OBS=0,0,2185,4672,2,1,2160,5141;STR=-0.025;STZ=-2.940;CBR=-0.058;CBZ=-6.949;QBR=-0.017;QBZ=-2.052;MBR=0.549;MSR=0.007;MBZ=65.322;IOR=0.042;IOZ=-8.242;IOH=0.000;IOD=-0.000;AOI=-971.007;AOZ=-962.764;ABE=0.382;ABZ=-33.104;BCS=-29963.482;FIC=-29.769;LQR=0.040;MQ0=0.000;MQ10=0.350;MQ20=0.445;MQ30=0.868;MENDEL=0;SVM=-0.35901376;AN=416;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|),SYNONYMOUS_CODING(LOW|SILENT|tcT/tcC|S269|OR4F5|protein_coding|CODING|ENST00000335137|exon_1_69091_70008)
1	70281	.	C	T	0.0	SVM	NS=203;AF=0.096;AC=40;s50=0.42;LBS=4,2,172,96,3,4,20,12;OBS=4,7,6111,7689,0,4,1504,2230;STR=0.033;STZ=4.377;CBR=-0.011;CBZ=-1.439;QBR=0.087;QBZ=11.495;MBR=-0.491;MSR=-0.030;MBZ=-65.078;IOR=0.147;IOZ=-9.311;IOH=0.001;IOD=0.000;AOI=-469.567;AOZ=-460.256;ABE=0.464;ABZ=-7.702;BCS=-16221.223;FIC=-0.688;LQR=0.017;MQ0=0.000;MQ10=0.445;MQ20=0.556;MQ30=0.934;MENDEL=1;SVM=-1.567652;AN=406;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	70300	rs144161449	C	T	0.0	SVM	NS=109;AF=0.009;AC=2;s50=0.24;LBS=6,2,132,177,4,13,180,77;OBS=1,1,6635,7364,1,5,3812,4200;STR=-0.002;STZ=-0.261;CBR=0.027;CBZ=4.054;QBR=0.030;QBZ=4.394;MBR=0.274;MSR=0.024;MBZ=40.659;IOR=0.070;IOZ=-10.295;IOH=0.000;IOD=0.000;AOI=-910.772;AOZ=-900.477;ABE=0.586;ABZ=32.248;BCS=-31022.822;FIC=-37.322;LQR=0.025;MQ0=0.000;MQ10=0.487;MQ20=0.574;MQ30=0.915;MENDEL=0;SVM=-1.1758819;AN=218;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	70604	.	G	A	0.0	SVM	NS=238;AF=0.837;AC=387;s50=0.48;LBS=79,25,3,0,193,64,4,0;OBS=840,749,0,1,1645,1999,1,0;STR=-0.071;STZ=-5.141;CBR=0.047;CBZ=3.384;QBR=0.066;QBZ=4.744;MBR=-0.339;MSR=0.012;MBZ=-24.523;IOR=0.059;IOZ=-5.634;IOH=0.001;IOD=0.000;AOI=-332.283;AOZ=-326.649;ABE=0.713;ABZ=30.659;BCS=-5513.333;FIC=-0.936;LQR=0.065;MQ0=0.000;MQ10=0.191;MQ20=0.407;MQ30=0.902;MENDEL=0;SVM=-1.3711333;AN=476;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	70865	.	T	C	0.0	SVM	NS=300;AF=0.003;AC=2;s50=0.65;LBS=1,1,17,8,1,1,15,41;OBS=0,3,115,70,0,0,2162,1479;STR=-0.012;STZ=-0.737;CBR=0.004;CBZ=0.263;QBR=-0.187;QBZ=-11.575;MBR=0.217;MSR=0.011;MBZ=13.417;IOR=0.151;IOZ=-4.093;IOH=0.000;IOD=-0.001;AOI=-55.654;AOZ=-51.561;ABE=0.618;ABZ=2.962;BCS=-45.771;FIC=-1.813;LQR=0.021;MQ0=0.000;MQ10=0.725;MQ20=0.789;MQ30=0.953;MENDEL=0;SVM=-1.9384739;AN=600;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	71192	.	A	G	0.0	SVM	NS=353;AF=0.001;AC=1;s50=0.76;LBS=25,9,2,1,17,13,0,5;OBS=767,358,16,20,1327,1001,22,16;STR=0.107;STZ=6.293;CBR=-0.133;CBZ=-7.829;QBR=0.174;QBZ=10.229;MBR=-0.566;MSR=-0.078;MBZ=-33.243;IOR=0.822;IOZ=-3.930;IOH=0.032;IOD=0.010;AOI=-650.873;AOZ=-646.943;ABE=0.207;ABZ=-30.383;BCS=-11455.185;FIC=-62.216;LQR=0.018;MQ0=0.000;MQ10=0.754;MQ20=0.847;MQ30=0.984;MENDEL=0;SVM=-1.3584789;AN=706;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	72021	.	G	A	0.0	SVM	NS=239;AF=0.025;AC=12;s50=0.50;LBS=7,4,1,0,84,105,1,4;OBS=64,47,0,0,2792,1591,0,0;STR=0.020;STZ=1.326;CBR=0.011;CBZ=0.747;QBR=-0.013;QBZ=-0.903;MBR=0.090;MSR=0.001;MBZ=6.056;IOR=0.000;IOZ=-4.934;IOH=0.000;IOD=0.000;AOI=-31.053;AOZ=-26.119;ABE=0.688;ABZ=5.550;BCS=-17.172;FIC=0.166;LQR=0.043;MQ0=0.000;MQ10=0.594;MQ20=0.697;MQ30=0.957;MENDEL=1;SVM=-2.4453633;AN=478;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	72251	.	C	G	0.0	SVM	NS=267;AF=0.096;AC=52;s50=0.55;LBS=4,2,144,63,17,18,2,4;OBS=22,18,1381,1544,149,201,0,2;STZ=0.029;STZ=1.640;CBZ=-0.006;CBZ=-0.369;QBZ=-0.089;QBZ=-5.098;MBR=-0.311;MSR=-0.041;MBZ=-17.816;IOZ=0.663;IOH=-4.576;IOD=0.000;IOD=-0.013;AOZ=-86.006;AOZ=-81.429;ABZ=0.516;ABZ=0.965;BCS=-1012.820;FIC=-0.361;LQR=0.069;MQ10=0.000;MQ10=0.112;MQ20=0.329;MQ30=0.802;MENDEL=5;SVM=-0.71925705;AN=534;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	72697	.	T	A	0.0	SVM	NS=175;AF=0.101;AC=35;s50=0.35;LBS=83,70,3,1,2,5,142,40;OBS=3357,3493,1,2,10,0,2179,2968;STR=-0.066;STZ=-7.254;CBR=-0.010;CBZ=-1.147;QBR=0.136;QBZ=14.911;MBR=-0.593;MSR=0.026;MBZ=-65.004;IOR=0.194;IOZ=-7.326;IOH=0.002;IOD=0.001;AOI=-1078.663;AOZ=-1071.337;ABE=0.479;ABZ=-3.983;BCS=-32026.479;FIC=-1.696;LQR=0.027;MQ0=0.000;MQ10=0.495;MQ20=0.601;MQ30=0.909;MENDEL=0;SVM=-1.5742803;AN=350;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	72705	.	A	T	0.0	SVM	NS=289;AF=0.083;AC=48;s50=0.59;LBS=295,190,4,2,6,5,4,4;OBS=4659,5993,2,0,130,85,103,84;STR=-0.030;STZ=-3.098;CBR=0.017;CBZ=1.781;QBR=0.004;QBZ=0.364;MBR=0.033;MSR=0.007;MBZ=3.405;IOR=0.786;IOZ=-7.519;IOH=0.036;IOD=0.016;AOI=-19.056;AOZ=-11.537;ABE=0.760;ABZ=9.575;BCS=-1057.507;FIC=0.721;LQR=0.044;MQ0=0.000;MQ10=0.466;MQ20=0.580;MQ30=0.918;MENDEL=2;SVM=-2.1341606;AN=578;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	72713	.	A	G	0.0	SVM	NS=423;AF=0.001;AC=1;s50=0.88;LBS=81,208,8,5,13,20,4,8;OBS=4564,4682,3,0,279,237,13,0;STR=-0.021;STZ=-2.080;CBR=0.049;CBZ=4.821;QBR=-0.074;QBZ=-7.328;MBR=0.155;MSR=0.028;MBZ=15.265;IOR=0.213;IOZ=-7.667;IOH=0.000;IOD=-0.002;AOI=-83.760;AOZ=-76.093;ABE=0.577;ABZ=6.698;BCS=-1665.928;FIC=-35.273;LQR=0.032;MQ0=0.000;MQ10=0.498;MQ20=0.603;MQ30=0.911;MENDEL=0;SVM=-0.56305882;AN=846;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	72717	.	T	C	0.0	SVM	NS=443;AF=0.001;AC=1;s50=0.93;LBS=3,16,4,45,2,15,106,473;OBS=1,7,34,47,1,1,3324,3334;STR=0.017;STZ=1.413;CBR=0.010;CBZ=0.856;QBR=-0.009;QBZ=-0.749;MBR=0.081;MSR=0.019;MBZ=6.662;IOR=0.162;IOZ=-7.196;IOH=0.003;IOD=0.001;AOI=-19.431;AOZ=-12.235;ABE=0.690;ABZ=5.497;BCS=-88.320;FIC=-7.527;LQR=0.085;MQ0=0.000;MQ10=0.487;MQ20=0.592;MQ30=0.913;MENDEL=0;SVM=-0.44165918;AN=886;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	72787	.	C	T	0.0	SVM	NS=268;AF=1.000;AC=533;s50=0.55;LBS=6,7,238,353,6,4,225,139;OBS=1,1,113,202,1,3,1672,1648;STZ=-0.081;STZ=-4.906;CBZ=0.031;CBZ=1.876;QBZ=0.138;QBZ=8.297;MBR=0.039;MSR=-0.103;MBZ=2.346;IOZ=0.196;IOH=-4.946;IOD=1.000;IOD=0.998;AOZ=-776.704;AOZ=-771.758;ABZ=0.500;ABZ=0.000;BCS=-16021.596;FIC=-nan;LQR=0.208;MQ10=0.000;MQ10=0.186;MQ20=0.373;MQ30=0.775;MENDEL=1;SVM=-0.90434919;AN=536;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	73088	.	T	C	0.0	SVM	NS=364;AF=0.011;AC=8;s50=0.77;LBS=6,6,18,26,3,8,206,135;OBS=0,1,568,491,10,16,3639,3380;STR=-0.012;STZ=-1.086;CBR=-0.010;CBZ=-0.878;QBR=0.036;QBZ=3.247;MBR=-0.563;MSR=-0.037;MBZ=-50.579;IOR=0.355;IOZ=-7.001;IOH=0.000;IOD=-0.003;AOI=-179.046;AOZ=-172.046;ABE=0.479;ABZ=-1.737;BCS=-4341.415;FIC=-2.659;LQR=0.045;MQ0=0.000;MQ10=0.197;MQ20=0.357;MQ30=0.861;MENDEL=0;SVM=-0.35940835;AN=728;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	73104	.	T	C	0.0	SVM	NS=338;AF=0.026;AC=18;s50=0.71;LBS=3,0,10,2,3,2,160,128;OBS=0,1,119,75,0,1,4500,4194;STR=-0.028;STZ=-2.632;CBR=0.006;CBZ=0.572;QBR=-0.014;QBZ=-1.347;MBR=-0.049;MSR=-0.046;MBZ=-4.618;IOR=0.045;IOZ=-6.555;IOH=0.000;IOD=-0.000;AOI=-40.653;AOZ=-34.098;ABE=0.790;ABZ=9.728;BCS=26.185;FIC=0.404;LQR=0.033;MQ0=0.000;MQ10=0.256;MQ20=0.410;MQ30=0.865;MENDEL=3;SVM=-0.82094915;AN=676;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	74555	.	A	G	0.0	SVM	NS=24;AF=0.174;AC=8;s50=0.05;LBS=25,83,0,1,26,62,1,2;OBS=802,1498,3,2,959,1848,3,15;STR=0.007;STZ=0.528;CBR=0.042;CBZ=2.978;QBR=0.107;QBZ=7.629;MBR=-0.088;MSR=0.049;MBZ=-6.311;IOR=0.470;IOZ=-5.081;IOH=0.007;IOD=0.002;AOI=-638.250;AOZ=-633.168;ABE=0.457;ABZ=-7.188;BCS=-12192.105;FIC=-1.705;LQR=0.037;MQ0=0.000;MQ10=0.149;MQ20=0.301;MQ30=0.679;MENDEL=0;SVM=-1.9370351;AN=48;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	74570	.	T	A	0.0	SVM	NS=136;AF=0.017;AC=5;s50=0.30;LBS=18,33,0,0,2,3,26,23;OBS=330,759,0,0,1,0,1090,2174;STR=0.028;STZ=1.877;CBR=0.012;CBZ=0.776;QBR=-0.188;QBZ=-12.386;MBR=0.260;MSR=0.069;MBZ=17.183;IOR=0.046;IOZ=-4.571;IOH=0.000;IOD=-0.000;AOI=-280.391;AOZ=-275.821;ABE=0.524;ABZ=2.874;BCS=-3483.747;FIC=-11.827;LQR=0.022;MQ0=0.000;MQ10=0.141;MQ20=0.286;MQ30=0.646;MENDEL=0;SVM=-0.77802983;AN=272;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	74681	rs13328683	G	T	0.0	SVM	NS=40;AF=0.970;AC=64;s50=0.05;LBS=1,3,6,2,17,18,141,102;OBS=1,3,1,0,98,228,2237,4390;STR=-0.016;STZ=-1.359;CBR=-0.019;CBZ=-1.546;QBR=0.066;QBZ=5.490;MBR=0.013;MSR=0.053;MBZ=1.117;IOR=0.128;IOZ=-5.846;IOH=0.002;IOD=0.002;AOI=-1316.823;AOZ=-1310.977;ABE=0.298;ABZ=-12.084;BCS=-35058.717;FIC=-0.661;LQR=0.038;MQ0=0.000;MQ10=0.265;MQ20=0.407;MQ30=0.670;MENDEL=0;SVM=-2.3620179;AN=80;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	74771	rs13328675	A	G	0.0	SVM	NS=61;AF=0.023;AC=3;s50=0.13;LBS=118,91,15,4,67,52,13,3;OBS=1198,1727,4,3,533,681,0,2;STR=-0.027;STZ=-1.751;CBR=-0.031;CBZ=-1.991;QBR=-0.090;QBZ=-5.758;MBR=-0.011;MSR=-0.087;MBZ=-0.725;IOR=0.239;IOZ=-5.323;IOH=0.003;IOD=0.000;AOI=-265.264;AOZ=-259.941;ABE=0.512;ABZ=1.479;BCS=-3757.039;FIC=-10.698;LQR=0.073;MQ0=0.000;MQ10=0.319;MQ20=0.426;MQ30=0.618;MENDEL=0;SVM=-2.6776671;AN=122;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|),DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000534990|)
1	74902	rs151085876	C	T	0.0	PASS	NS=386;AF=0.004;AC=3;s50=0.83;LBS=2,2,217,483,2,1,12,48;OBS=2,2,4887,11473,4,9,109,292;STR=0.009;STZ=1.141;CBR=-0.020;CBZ=-2.592;QBR=-0.050;QBZ=-6.536;MBR=-0.189;MSR=0.019;MBZ=-24.497;IOR=0.159;IOZ=-9.495;IOH=0.037;IOD=0.036;AOI=-57.364;AOZ=-47.869;ABE=0.577;ABZ=3.304;BCS=-267.048;FIC=-6.401;LQR=0.043;MQ0=0.000;MQ10=0.091;MQ20=0.227;MQ30=0.635;MENDEL=0;SVM=0.65823523;AN=772;EFF=DOWNSTREAM(MODIFIER||||OR4F5|protein_coding|CODING|ENST00000335137|)
1	75194	.	G	C	0.0	SVM	NS=30;AF=0.014;AC=1;s50=0.07;LBS=1,17,3,29,16,89,0,9;OBS=29,54,214,421,732,1091,2,0;STR=0.058;STZ=2.870;CBR=0.045;CBZ=2.233;QBR=0.030;QBZ=1.465;MBR=0.080;MSR=0.098;MBZ=3.950;IOR=0.864;IOZ=-3.555;IOH=0.027;IOD=-0.007;AOI=-184.881;AOZ=-181.326;ABE=0.485;ABZ=-1.335;BCS=-2430.018;FIC=-11.906;LQR=0.053;MQ0=0.000;MQ10=0.147;MQ20=0.300;MQ30=0.629;MENDEL=0;SVM=-1.6643159;AN=60;EFF=INTERGENIC(LOW||||||||)
1	75200	.	G	C	0.0	SVM	NS=28;AF=0.016;AC=1;s50=0.07;LBS=0,20,6,11,47,172,1,9;OBS=30,45,7,11,865,1150,0,4;STR=0.007;STZ=0.303;CBR=-0.040;CBZ=-1.806;QBR=0.007;QBZ=0.304;MBR=0.075;MSR=0.134;MBZ=3.390;IOR=0.870;IOZ=-3.335;IOH=0.027;IOD=-0.012;AOI=3.667;AOZ=7.002;ABE=0.663;ABZ=2.539;BCS=-448.568;FIC=0.632;LQR=0.104;MQ0=0.000;MQ10=0.184;MQ20=0.353;MQ30=0.670;MENDEL=0;SVM=-2.4531128;AN=56;EFF=INTERGENIC(LOW||||||||)
1	75206	.	G	A	0.0	SVM	NS=16;AF=0.114;AC=3;s50=0.03;LBS=22,20,3,1,49,57,0,3;OBS=436,789,9,9,385,720,13,21;STZ=-0.008;STZ=-0.378;CBZ=0.020;CBZ=0.964;QBZ=0.085;QBZ=4.088;MBR=-0.059;MSR=0.121;MBZ=-2.833;IOZ=0.825;IOH=-3.242;IOD=0.018;IOD=-0.004;AOZ=-410.118;AOZ=-406.876;ABZ=0.410;ABZ=-9.443;BCS=-5392.277;FIC=-1.985;LQR=0.060;MQ10=0.000;MQ10=0.170;MQ20=0.312;MQ30=0.627;MENDEL=0;SVM=-2.2054282;AN=32;EFF=INTERGENIC(LOW||||||||)
1	75254	.	C	A	0.0	SVM	NS=32;AF=0.016;AC=1;s50=0.06;LBS=11,12,346,47,1,2,5,0;OBS=100,97,2033,1069,7,6,5,2;STR=0.073;STZ=4.215;CBR=-0.033;CBZ=-1.876;QBR=0.041;QBZ=2.380;MBR=0.089;MSR=0.196;MBZ=5.088;IOR=0.494;IOZ=-4.510;IOH=0.000;IOD=-0.006;AOI=-52.082;AOZ=-47.572;ABE=0.610;ABZ=6.453;BCS=-565.846;FIC=-2.718;LQR=0.112;MQ0=0.000;MQ10=0.218;MQ20=0.428;MQ30=0.752;MENDEL=0;SVM=-1.9337308;AN=64;EFF=INTERGENIC(LOW||||||||)
1	76838	rs145613166	T	G	0.0	PASS	NS=309;AF=0.006;AC=4;s50=0.65;LBS=5,6,6,5,39,50,350,270;OBS=4,3,2,7,2565,1603,5327,3505;STR=-0.012;STZ=-1.334;CBR=0.014;CBZ=1.543;QBR=0.123;QBZ=14.034;MBR=0.417;MSR=-0.002;MBZ=47.575;IOR=0.184;IOZ=-8.402;IOH=0.001;IOD=-0.000;AOI=-578.249;AOZ=-569.847;ABE=0.419;ABZ=-17.690;BCS=-18364.422;FIC=-18.035;LQR=0.052;MQ0=0.000;MQ10=0.141;MQ20=0.295;MQ30=0.750;MENDEL=0;SVM=0.33812461;AN=618;EFF=INTERGENIC(LOW||||||||)
1	76846	.	T	A	0.0	PASS	NS=280;AF=0.276;AC=158;s50=0.60;LBS=34,27,3,2,0,5,156,406;OBS=504,484,4,1,5,4,7564,5551;STZ=0.034;STZ=4.083;CBZ=0.008;CBZ=0.919;QBZ=-0.012;QBZ=-1.464;MBR=-0.336;MSR=-0.014;MBZ=-39.856;IOZ=0.154;IOH=-8.773;IOD=0.001;IOD=0.000;AOZ=-137.572;AOZ=-128.799;ABZ=0.606;ABZ=8.570;BCS=-1627.556;FIC=0.431;LQR=0.042;MQ10=0.000;MQ10=0.115;MQ20=0.259;MQ30=0.752;MENDEL=7;SVM=0.062356872;AN=560;EFF=INTERGENIC(LOW||||||||)
1	76854	rs138231210	A	G	0.0	PASS	NS=419;AF=0.001;AC=1;s50=0.90;LBS=322,200,20,7,38,11,13,5;OBS=5815,4310,1,1,457,398,3,0;STR=0.022;STZ=2.262;CBR=-0.022;CBZ=-2.356;QBR=0.065;QBZ=6.815;MBR=0.182;MSR=-0.035;MBZ=19.024;IOR=0.066;IOZ=-8.446;IOH=0.000;IOD=-0.000;AOI=-125.637;AOZ=-117.191;ABE=0.469;ABZ=-3.508;BCS=-3437.415;FIC=-28.049;LQR=0.049;MQ0=0.000;MQ10=0.143;MQ20=0.297;MQ30=0.782;MENDEL=0;SVM=1.4884009;AN=838;EFF=INTERGENIC(LOW||||||||)
1	77089	rs149579417	C	T	0.0	PASS	NS=232;AF=0.002;AC=1;s50=0.48;LBS=5,6,165,51,8,1,105,38;OBS=1,2,2156,1352,1,0,1987,1135;STR=-0.023;STZ=-1.834;CBR=0.021;CBZ=1.731;QBR=0.052;QBZ=4.232;MBR=0.242;MSR=-0.041;MBZ=19.716;IOR=0.097;IOZ=-6.103;IOH=0.000;IOD=-0.000;AOI=-598.184;AOZ=-592.081;ABE=0.380;ABZ=-21.267;BCS=-13106.130;FIC=-92.933;LQR=0.051;MQ0=0.000;MQ10=0.077;MQ20=0.245;MQ30=0.762;MENDEL=0;SVM=0.045646335;AN=464;EFF=INTERGENIC(LOW||||||||)
1	77110	.	A	G	0.0	SVM	NS=208;AF=0.248;AC=104;s50=0.43;LBS=87,96,3,0,10,20,1,3;OBS=2796,1968,1,0,294,166,3,1;STZ=-0.030;STZ=-2.166;CBZ=0.037;CBZ=2.710;QBZ=-0.067;QBZ=-4.820;MBR=-0.197;MSR=-0.038;MBZ=-14.224;IOZ=0.150;IOH=-5.321;IOD=0.002;IOD=0.001;AOZ=-104.672;AOZ=-99.351;ABZ=0.596;ABZ=6.499;BCS=-1045.229;FIC=0.346;LQR=0.039;MQ10=0.000;MQ10=0.067;MQ20=0.232;MQ30=0.674;MENDEL=2;SVM=-0.095714124;AN=416;EFF=INTERGENIC(LOW||||||||)
1	77462	.	G	A	0.0	SVM	NS=112;AF=0.637;AC=135;s50=0.21;LBS=52,42,2,1,95,70,0,1;OBS=1628,1034,22,6,1844,1038,1,0;STR=0.029;STZ=2.173;CBR=-0.031;CBZ=-2.341;QBR=0.026;QBZ=1.942;MBR=-0.498;MSR=0.017;MBZ=-37.095;IOR=0.489;IOZ=-5.493;IOH=0.002;IOD=-0.003;AOI=-560.501;AOZ=-555.008;ABE=0.669;ABZ=20.866;BCS=-12039.122;FIC=0.079;LQR=0.045;MQ0=0.000;MQ10=0.316;MQ20=0.460;MQ30=0.862;MENDEL=0;SVM=-2.0279515;AN=224;EFF=INTERGENIC(LOW||||||||)
1	77568	.	C	A	0.0	SVM	NS=118;AF=0.664;AC=160;s50=0.25;LBS=89,28,98,33,2,1,5,2;OBS=1804,1606,1723,1832,0,0,3,2;STR=-0.044;STZ=-3.701;CBR=0.003;CBZ=0.236;QBR=-0.054;QBZ=-4.485;MBR=-0.542;MSR=0.077;MBZ=-45.229;IOR=0.134;IOZ=-5.687;IOH=0.002;IOD=0.001;AOI=-696.769;AOZ=-691.082;ABE=0.670;ABZ=24.708;BCS=-15405.816;FIC=-0.051;LQR=0.034;MQ0=0.000;MQ10=0.340;MQ20=0.466;MQ30=0.881;MENDEL=0;SVM=-1.9166234;AN=236;EFF=INTERGENIC(LOW||||||||)
1	77647	.	A	T	0.0	SVM	NS=228;AF=0.017;AC=8;s50=0.49;LBS=246,49,11,0,8,1,24,3;OBS=2405,1760,7,2,3,0,252,125;STR=-0.051;STZ=-3.421;CBR=0.027;CBZ=1.827;QBR=-0.059;QBZ=-3.962;MBR=-0.083;MSR=-0.026;MBZ=-5.591;IOR=0.323;IOZ=-4.987;IOH=0.001;IOD=-0.002;AOI=-89.964;AOZ=-84.977;ABE=0.705;ABZ=16.885;BCS=-738.544;FIC=-3.608;LQR=0.066;MQ0=0.000;MQ10=0.533;MQ20=0.640;MQ30=0.893;MENDEL=0;SVM=-2.0515154;AN=456;EFF=INTERGENIC(LOW||||||||)
1	77919	.	T	G	0.0	SVM	NS=172;AF=0.183;AC=66;s50=0.37;LBS=3,0,4,1,23,6,197,82;OBS=2,0,0,1,617,377,2329,1816;STR=-0.047;STZ=-3.363;CBR=-0.046;CBZ=-3.287;QBR=0.028;QBZ=1.988;MBR=-0.267;MSR=-0.004;MBZ=-19.147;IOR=0.091;IOZ=-5.493;IOH=0.000;IOD=-0.000;AOI=-215.205;AOZ=-209.712;ABE=0.611;ABZ=11.707;BCS=-2967.266;FIC=-0.300;LQR=0.057;MQ0=0.000;MQ10=0.125;MQ20=0.307;MQ30=0.822;MENDEL=1;SVM=-0.78694989;AN=344;EFF=INTERGENIC(LOW||||||||)
1	78035	.	G	A	0.0	SVM	NS=278;AF=0.146;AC=82;s50=0.59;LBS=25,10,10,4,144,79,5,1;OBS=249,91,0,0,1703,1062,0,1;STR=-0.075;STZ=-4.174;CBR=-0.021;CBZ=-1.148;QBR=-0.118;QBZ=-6.591;MBR=-0.322;MSR=-0.028;MBZ=-17.932;IOR=0.053;IOZ=-4.233;IOH=0.000;IOD=-0.000;AOI=-97.255;AOZ=-93.022;ABE=0.518;ABZ=1.046;BCS=-705.485;FIC=0.059;LQR=0.077;MQ0=0.000;MQ10=0.094;MQ20=0.284;MQ30=0.911;MENDEL=4;SVM=-0.47617918;AN=556;EFF=INTERGENIC(LOW||||||||)
1	78216	.	C	T	0.0	SVM	NS=82;AF=0.576;AC=96;s50=0.17;LBS=1,3,29,85,0,1,47,55;OBS=0,2,1302,752,0,0,988,751;STR=0.067;STZ=4.123;CBR=-0.034;CBZ=-2.077;QBR=-0.057;QBZ=-3.507;MBR=-0.507;MSR=-0.058;MBZ=-31.223;IOR=0.104;IOZ=-4.164;IOH=0.000;IOD=-0.000;AOI=-487.853;AOZ=-483.689;ABE=0.618;ABZ=12.541;BCS=-7752.470;FIC=0.150;LQR=0.054;MQ0=0.000;MQ10=0.321;MQ20=0.449;MQ30=0.881;MENDEL=1;SVM=-2.1242615;AN=164;EFF=INTERGENIC(LOW||||||||)
1	78923	.	T	G	0.0	SVM	NS=72;AF=0.634;AC=92;s50=0.15;LBS=3,12,2,10,89,166,170,289;OBS=0,0,0,1,2474,1378,2530,1664;STR=-0.040;STZ=-3.605;CBR=-0.010;CBZ=-0.914;QBR=0.059;QBZ=5.284;MBR=-0.212;MSR=0.015;MBZ=-19.001;IOR=0.020;IOZ=-6.981;IOH=0.000;IOD=-0.000;AOI=-647.688;AOZ=-640.707;ABE=0.617;ABZ=19.207;BCS=-16759.089;FIC=-0.057;LQR=0.082;MQ0=0.000;MQ10=0.126;MQ20=0.358;MQ30=0.889;MENDEL=1;SVM=-1.8698933;AN=144;EFF=INTERGENIC(LOW||||||||)
1	79025	.	G	A	0.0	SVM	NS=46;AF=0.032;AC=3;s50=0.10;LBS=28,128,1,12,34,282,2,7;OBS=5790,4017,0,2,1077,1146,1,1;STR=-0.083;STZ=-9.109;CBR=-0.004;CBZ=-0.386;QBR=0.233;QBZ=25.575;MBR=-0.339;MSR=0.071;MBZ=-37.187;IOR=0.071;IOZ=-7.242;IOH=0.000;IOD=-0.000;AOI=-1573.820;AOZ=-1566.578;ABE=0.199;ABZ=-55.035;BCS=-48525.068;FIC=-6.596;LQR=0.038;MQ0=0.000;MQ10=0.634;MQ20=0.720;MQ30=0.923;MENDEL=0;SVM=-1.9488546;AN=92;EFF=INTERGENIC(LOW||||||||)
1	79033	rs62641298	A	G	0.0	SVM	NS=43;AF=1.000;AC=76;s50=0.07;LBS=137,43,60,5,784,535,37,3;OBS=119,103,9,1,3789,4197,1,2;STR=0.020;STZ=1.811;CBR=0.015;CBZ=1.365;QBR=-0.012;QBZ=-1.047;MBR=-0.167;MSR=0.086;MBZ=-15.129;IOR=0.163;IOZ=-8.149;IOH=1.000;IOD=0.998;AOI=-1136.801;AOZ=-1128.652;ABE=0.500;ABZ=0.000;BCS=-39602.629;FIC=-nan;LQR=0.154;MQ0=0.000;MQ10=0.575;MQ20=0.671;MQ30=0.936;MENDEL=0;SVM=-2.2445017;AN=86;EFF=INTERGENIC(LOW||||||||)
1	79050	rs62641299	G	T	0.0	SVM	NS=43;AF=1.000;AC=83;s50=0.08;LBS=4,5,8,5,39,25,337,213;OBS=0,4,0,14,165,189,7065,5964;STR=-0.025;STZ=-2.837;CBR=-0.018;CBZ=-2.077;QBR=0.013;QBZ=1.489;MBR=-0.153;MSR=-0.003;MBZ=-17.750;IOR=0.185;IOZ=-8.889;IOH=1.000;IOD=0.999;AOI=-1693.709;AOZ=-1684.821;ABE=0.500;ABZ=0.000;BCS=-66917.476;FIC=-nan;LQR=0.044;MQ0=0.000;MQ10=0.262;MQ20=0.429;MQ30=0.870;MENDEL=0;SVM=-1.6632269;AN=86;EFF=INTERGENIC(LOW||||||||)
1	79078	.	G	C	0.0	SVM	NS=199;AF=0.144;AC=60;s50=0.43;LBS=1,0,12,8,229,327,2,1;OBS=1,0,535,294,5720,3905,0,0;STR=-0.028;STZ=-2.870;CBR=0.013;CBZ=1.378;QBR=0.039;QBZ=4.030;MBR=-0.353;MSR=0.048;MBZ=-36.129;IOR=0.017;IOZ=-7.679;IOH=0.000;IOD=-0.000;AOI=-132.904;AOZ=-125.225;ABE=0.528;ABZ=1.972;BCS=-1752.968;FIC=0.115;LQR=0.052;MQ0=0.000;MQ10=0.139;MQ20=0.326;MQ30=0.866;MENDEL=1;SVM=-0.96332254;AN=398;EFF=INTERGENIC(LOW||||||||)
1	79137	rs143777184	A	T	0.0	SVM	NS=425;AF=0.001;AC=1;s50=0.92;LBS=39,101,4,6,0,5,8,11;OBS=2498,1873,2,0,3,2,81,59;STR=-0.002;STZ=-0.154;CBR=0.010;CBZ=0.639;QBR=-0.072;QBZ=-4.808;MBR=0.095;MSR=0.092;MBZ=6.372;IOR=0.247;IOZ=-4.595;IOH=0.000;IOD=-0.002;AOI=-38.575;AOZ=-33.980;ABE=0.426;ABZ=-3.146;BCS=-534.642;FIC=-7.378;LQR=0.034;MQ0=0.000;MQ10=0.177;MQ20=0.454;MQ30=0.915;MENDEL=0;SVM=-0.27052066;AN=850;EFF=INTERGENIC(LOW||||||||)
1	79151	.	C	T	0.0	SVM	NS=229;AF=0.220;AC=102;s50=0.48;LBS=2,12,630,305,12,6,113,50;OBS=2,0,2136,1609,3,0,295,229;STZ=0.005;STZ=0.324;CBZ=0.104;CBZ=6.774;QBZ=-0.055;QBZ=-3.595;MBR=-0.181;MSR=0.068;MBZ=-11.826;IOZ=0.129;IOH=-5.804;IOD=0.002;IOD=0.001;AOZ=-109.544;AOZ=-103.740;ABZ=0.651;ABZ=11.006;BCS=-1063.665;FIC=0.208;LQR=0.205;MQ10=0.000;MQ10=0.132;MQ20=0.446;MQ30=0.892;MENDEL=2;SVM=-0.85259725;AN=458;EFF=INTERGENIC(LOW||||||||)
1	79202	.	G	A	0.0	SVM	NS=277;AF=0.266;AC=151;s50=0.60;LBS=6,19,1,0,78,27,3,1;OBS=178,140,0,0,2134,1645,0,0;STR=0.003;STZ=0.177;CBR=0.020;CBZ=1.298;QBR=-0.101;QBZ=-6.472;MBR=-0.192;MSR=-0.001;MBZ=-12.270;IOR=0.000;IOZ=-4.594;IOH=0.000;IOD=0.000;AOI=-85.019;AOZ=-80.424;ABE=0.573;ABZ=4.056;BCS=-450.107;FIC=0.495;LQR=0.031;MQ0=0.000;MQ10=0.093;MQ20=0.286;MQ30=0.797;MENDEL=4;SVM=-0.20038094;AN=554;EFF=INTERGENIC(LOW||||||||)
1	79418	rs2691296	G	C	0.0	SVM	NS=134;AF=0.028;AC=8;s50=0.29;LBS=1,2,33,89,83,324,1,12;OBS=0,1,432,960,1217,2741,2,5;STZ=-0.003;STZ=-0.205;CBZ=-0.075;CBZ=-5.518;QBZ=0.078;QBZ=5.670;MBR=-0.284;MSR=-0.031;MBZ=-20.798;IOZ=0.204;IOH=-5.581;IOD=0.000;IOD=-0.001;AOZ=-292.112;AOZ=-286.532;ABZ=0.524;ABZ=2.740;BCS=-4538.208;FIC=-7.561;LQR=0.090;MQ10=0.000;MQ10=0.140;MQ20=0.348;MQ30=0.846;MENDEL=0;SVM=-1.4125305;AN=268;EFF=INTERGENIC(LOW||||||||)
1	79538	rs2691295	C	T	0.0	SVM	NS=236;AF=0.040;AC=20;s50=0.51;LBS=27,2,400,69,13,1,114,32;OBS=2,0,1439,2443,0,2,227,292;STR=-0.044;STZ=-2.948;CBR=0.020;CBZ=1.338;QBR=-0.200;QBZ=-13.238;MBR=-0.409;MSR=0.107;MBZ=-27.110;IOR=0.125;IOZ=-5.279;IOH=0.000;IOD=-0.001;AOI=-118.082;AOZ=-112.803;ABE=0.496;ABZ=-0.239;BCS=-742.563;FIC=-2.754;LQR=0.123;MQ0=0.000;MQ10=0.152;MQ20=0.355;MQ30=0.810;MENDEL=1;SVM=-0.92647117;AN=472;EFF=INTERGENIC(LOW||||||||)
1	79610	.	C	T	0.0	SVM	NS=228;AF=0.049;AC=23;s50=0.48;LBS=5,2,45,50,2,4,45,42;OBS=0,0,842,988,3,1,99,116;STR=-0.000;STZ=-0.014;CBR=-0.026;CBZ=-1.171;QBR=-0.262;QBZ=-11.840;MBR=-0.370;MSR=-0.038;MBZ=-16.724;IOR=0.236;IOZ=-3.607;IOH=0.001;IOD=-0.001;AOI=-72.142;AOZ=-68.534;ABE=0.422;ABZ=-3.577;BCS=-352.155;FIC=-1.077;LQR=0.082;MQ0=0.000;MQ10=0.132;MQ20=0.328;MQ30=0.849;MENDEL=0;SVM=-1.3821048;AN=456;EFF=INTERGENIC(LOW||||||||)
1	79663	.	A	G	0.0	SVM	NS=259;AF=0.006;AC=3;s50=0.56;LBS=150,92,9,2,38,35,5,0;OBS=1406,1214,7,0,191,332,1,5;STR=0.128;STZ=7.153;CBR=0.098;CBZ=5.502;QBR=-0.217;QBZ=-12.148;MBR=-0.388;MSR=-0.038;MBZ=-21.724;IOR=0.389;IOZ=-4.496;IOH=0.016;IOD=0.012;AOI=-135.642;AOZ=-131.146;ABE=0.286;ABZ=-13.299;BCS=-1305.547;FIC=-18.123;LQR=0.091;MQ0=0.000;MQ10=0.113;MQ20=0.288;MQ30=0.574;MENDEL=0;SVM=-0.88782798;AN=518;EFF=INTERGENIC(LOW||||||||)
1	79678	.	T	C	0.0	SVM	NS=232;AF=0.006;AC=3;s50=0.51;LBS=4,6,7,36,3,4,143,149;OBS=0,3,450,610,1,1,1543,1388;STR=0.090;STZ=5.683;CBR=0.017;CBZ=1.071;QBR=0.234;QBZ=14.785;MBR=-0.408;MSR=-0.077;MBZ=-25.767;IOR=0.167;IOZ=-4.990;IOH=0.001;IOD=-0.000;AOI=-249.486;AOZ=-244.495;ABE=0.399;ABZ=-9.094;BCS=-3836.381;FIC=-23.981;LQR=0.077;MQ0=0.000;MQ10=0.113;MQ20=0.301;MQ30=0.644;MENDEL=0;SVM=-0.91836;AN=464;EFF=INTERGENIC(LOW||||||||)
1	79806	.	C	A	0.0	SVM	NS=238;AF=0.194;AC=94;s50=0.49;LBS=2,5,24,15,0,0,2,4;OBS=117,114,918,881,0,0,6,4;STZ=0.002;STZ=0.109;CBZ=0.007;CBZ=0.301;QBZ=-0.010;QBZ=-0.436;MBR=-0.206;MSR=-0.049;MBZ=-9.288;IOZ=0.484;IOH=-3.249;IOD=0.000;IOD=-0.005;AOZ=-82.890;AOZ=-79.641;ABZ=0.572;ABZ=3.852;BCS=-573.919;FIC=0.335;LQR=0.022;MQ10=0.000;MQ10=0.089;MQ20=0.273;MQ30=0.735;MENDEL=4;SVM=-0.58088051;AN=476;EFF=INTERGENIC(LOW||||||||)
1	79853	.	G	A	0.0	SVM	NS=254;AF=0.135;AC=71;s50=0.54;LBS=25,43,5,2,60,146,1,3;OBS=352,330,0,0,2344,1861,1,1;STR=0.029;STZ=2.013;CBR=0.051;CBZ=3.542;QBR=-0.133;QBZ=-9.291;MBR=-0.262;MSR=-0.062;MBZ=-18.347;IOR=0.062;IOZ=-5.540;IOH=0.000;IOD=-0.000;AOI=-148.392;AOZ=-142.851;ABE=0.523;ABZ=1.636;BCS=-1650.322;FIC=-0.063;LQR=0.053;MQ0=0.000;MQ10=0.089;MQ20=0.275;MQ30=0.733;MENDEL=1;SVM=-0.079392756;AN=508;EFF=INTERGENIC(LOW||||||||)
1	80141	rs140564416	A	G	0.0	SVM	NS=285;AF=0.216;AC=127;s50=0.61;LBS=83,74,1,0,59,11,2,3;OBS=3295,1803,2,2,590,314,1,2;STR=-0.005;STZ=-0.359;CBR=0.025;CBZ=1.965;QBR=-0.112;QBZ=-8.662;MBR=-0.220;MSR=-0.068;MBZ=-17.018;IOR=0.177;IOZ=-5.709;IOH=0.001;IOD=-0.000;AOI=-188.525;AOZ=-182.816;ABE=0.594;ABZ=7.299;BCS=-2210.799;FIC=0.065;LQR=0.036;MQ0=0.000;MQ10=0.093;MQ20=0.245;MQ30=0.708;MENDEL=8;SVM=-0.024098334;AN=570;EFF=INTERGENIC(LOW||||||||)
1	81100	.	T	G	0.0	SVM	NS=294;AF=0.180;AC=111;s50=0.64;LBS=6,3,1,2,95,152,116,744;OBS=0,1,1,1,517,550,4247,3493;STR=0.042;STZ=3.943;CBR=0.003;CBZ=0.281;QBR=-0.125;QBZ=-11.755;MBR=-0.340;MSR=-0.078;MBZ=-31.946;IOR=0.043;IOZ=-8.167;IOH=0.000;IOD=-0.000;AOI=-159.866;AOZ=-151.699;ABE=0.567;ABZ=4.744;BCS=-2295.882;FIC=0.234;LQR=0.112;MQ0=0.000;MQ10=0.124;MQ20=0.358;MQ30=0.845;MENDEL=6;SVM=-0.36652713;AN=588;EFF=INTERGENIC(LOW||||||||)
1	81204	.	T	C	0.0	SVM	NS=242;AF=0.259;AC=132;s50=0.53;LBS=1,2,6,7,0,2,278,350;OBS=0,0,355,301,0,0,2964,2631;STR=-0.007;STZ=-0.551;CBR=0.007;CBZ=0.559;QBR=0.078;QBZ=6.188;MBR=-0.217;MSR=-0.060;MBZ=-17.157;IOR=0.000;IOZ=-6.439;IOH=0.000;IOD=0.000;AOI=-124.903;AOZ=-118.464;ABE=0.567;ABZ=3.969;BCS=-1442.050;FIC=0.428;LQR=0.093;MQ0=0.000;MQ10=0.081;MQ20=0.311;MQ30=0.878;MENDEL=4;SVM=-0.97927703;AN=484;EFF=INTERGENIC(LOW||||||||)
1	81343	rs147763181	A	G	0.0	SVM	NS=283;AF=0.002;AC=1;s50=0.61;LBS=102,69,5,0,164,156,1,5;OBS=1071,1243,1,0,2171,1995,0,1;STR=-0.056;STZ=-4.495;CBR=-0.040;CBZ=-3.204;QBR=0.076;QBZ=6.099;MBR=0.127;MSR=-0.018;MBZ=10.255;IOR=0.045;IOZ=-6.499;IOH=0.000;IOD=0.000;AOI=-750.791;AOZ=-744.292;ABE=0.273;ABZ=-43.939;BCS=-18048.000;FIC=-88.143;LQR=0.070;MQ0=0.000;MQ10=0.091;MQ20=0.326;MQ30=0.785;MENDEL=0;SVM=-0.40614711;AN=566;EFF=INTERGENIC(LOW||||||||)
1	81374	.	T	C	0.0	SVM	NS=243;AF=0.156;AC=79;s50=0.52;LBS=3,3,5,10,0,3,89,80;OBS=0,0,244,408,0,0,1957,2578;STR=0.038;STZ=2.761;CBR=0.023;CBZ=1.621;QBR=0.058;QBZ=4.168;MBR=-0.220;MSR=-0.064;MBZ=-15.855;IOR=0.000;IOZ=-5.101;IOH=0.000;IOD=0.000;AOI=-153.472;AOZ=-148.371;ABE=0.571;ABZ=4.449;BCS=-2131.809;FIC=0.161;LQR=0.034;MQ0=0.000;MQ10=0.090;MQ20=0.310;MQ30=0.724;MENDEL=5;SVM=-0.58682766;AN=486;EFF=INTERGENIC(LOW||||||||)
1	81437	.	G	A	0.0	SVM	NS=254;AF=0.150;AC=78;s50=0.55;LBS=10,4,0,0,81,37,2,1;OBS=151,191,0,0,1502,1673,0,0;STR=0.019;STZ=1.106;CBR=-0.001;CBZ=-0.087;QBR=0.003;QBZ=0.195;MBR=-0.228;MSR=-0.005;MBZ=-13.530;IOR=0.000;IOZ=-4.354;IOH=0.000;IOD=0.000;AOI=-95.618;AOZ=-91.264;ABE=0.603;ABZ=6.133;BCS=-576.849;FIC=0.133;LQR=0.036;MQ0=0.000;MQ10=0.125;MQ20=0.378;MQ30=0.817;MENDEL=3;SVM=-0.91194249;AN=508;EFF=INTERGENIC(LOW||||||||)
1	82162	rs1815132	C	A	0.0	SVM	NS=135;AF=0.014;AC=4;s50=0.30;LBS=102,16,248,99,4,3,5,0;OBS=989,475,4525,2134,3,0,3,0;STR=0.003;STZ=0.303;CBR=0.059;CBZ=5.307;QBR=0.007;QBZ=0.616;MBR=-0.127;MSR=-0.022;MBZ=-11.435;IOR=0.112;IOZ=-6.890;IOH=0.000;IOD=-0.000;AOI=-251.817;AOZ=-244.927;ABE=0.551;ABZ=6.106;BCS=-4172.663;FIC=-11.388;LQR=0.054;MQ0=0.000;MQ10=0.319;MQ20=0.715;MQ30=0.874;MENDEL=0;SVM=-3.0900631;AN=270;EFF=INTERGENIC(LOW||||||||)
1	82163	rs139113303	G	A	0.0	SVM	NS=138;AF=0.021;AC=6;s50=0.30;LBS=41,32,17,9,459,177,7,11;OBS=304,157,2,0,4855,2354,0,1;STR=0.007;STZ=0.637;CBR=-0.031;CBZ=-2.726;QBR=0.012;QBZ=1.045;MBR=0.215;MSR=-0.025;MBZ=18.818;IOR=0.058;IOZ=-7.022;IOH=0.000;IOD=-0.000;AOI=-82.856;AOZ=-75.834;ABE=0.545;ABZ=3.970;BCS=-1642.965;FIC=-0.330;LQR=0.085;MQ0=0.000;MQ10=0.338;MQ20=0.712;MQ30=0.871;MENDEL=0;SVM=-1.8846769;AN=276;EFF=INTERGENIC(LOW||||||||)
1	82303	rs3871776	T	C	0.0	SVM	NS=141;AF=0.013;AC=4;s50=0.32;LBS=2,6,86,35,0,2,155,274;OBS=2,0,2041,1351,0,1,5577,3421;STZ=0.017;STZ=1.847;CBZ=-0.034;CBZ=-3.800;QBZ=0.138;QBZ=15.406;MBR=-0.422;MSR=0.017;MBZ=-46.966;IOZ=0.046;IOH=-7.876;IOD=0.001;IOD=0.001;AOZ=-506.690;AOZ=-498.814;ABZ=0.626;ABZ=23.219;BCS=-11739.610;FIC=-18.212;LQR=0.043;MQ10=0.000;MQ10=0.126;MQ20=0.398;MQ30=0.720;MENDEL=0;SVM=-1.3603704;AN=282;EFF=INTERGENIC(LOW||||||||)
1	82316	rs4030305	A	C	0.0	SVM	NS=308;AF=0.003;AC=2;s50=0.67;LBS=464,93,38,15,40,4,10,1;OBS=6280,3959,178,102,6,1,3,1;STR=-0.007;STZ=-0.744;CBR=-0.045;CBZ=-4.628;QBR=-0.072;QBZ=-7.353;MBR=-0.174;MSR=0.006;MBZ=-17.854;IOR=0.156;IOZ=-7.692;IOH=0.006;IOD=0.005;AOI=-48.711;AOZ=-41.020;ABE=0.628;ABZ=6.848;BCS=-336.006;FIC=-11.806;LQR=0.055;MQ0=0.000;MQ10=0.129;MQ20=0.397;MQ30=0.734;MENDEL=0;SVM=-0.68735511;AN=616;EFF=INTERGENIC(LOW||||||||)
1	82734	rs4030331	T	C	0.0	SVM	NS=119;AF=0.769;AC=182;s50=0.25;LBS=12,5,102,60,3,3,335,215;OBS=8,7,12130,4801,0,1,4425,1911;STR=-0.018;STZ=-2.708;CBR=0.091;CBZ=13.855;QBR=0.316;QBZ=48.275;MBR=-0.588;MSR=0.029;MBZ=-89.700;IOR=0.137;IOZ=-10.040;IOH=0.000;IOD=-0.000;AOI=-1957.403;AOZ=-1947.363;ABE=0.444;ABZ=-15.361;BCS=-86308.849;FIC=-0.428;LQR=0.030;MQ0=0.000;MQ10=0.619;MQ20=0.740;MQ30=0.889;MENDEL=1;SVM=-1.382911;AN=238;EFF=INTERGENIC(LOW||||||||)
1	83084	.	T	A	0.0	SVM	NS=6;AF=1.000;AC=8;s50=0.00;LBS=195,165,35,18,28,21,369,323;OBS=2003,811,5,4,13,9,1146,551;STR=-0.039;STZ=-2.588;CBR=-0.049;CBZ=-3.292;QBR=0.171;QBZ=11.491;MBR=0.114;MSR=-0.080;MBZ=7.645;IOR=0.463;IOZ=-5.936;IOH=1.000;IOD=0.993;AOI=-539.216;AOZ=-533.281;ABE=0.500;ABZ=0.000;BCS=-6362.205;FIC=-nan;LQR=0.189;MQ0=0.000;MQ10=0.403;MQ20=0.718;MQ30=0.884;MENDEL=0;SVM=-2.7898971;AN=12;EFF=INTERGENIC(LOW||||||||)
1	83603	.	C	T	0.0	SVM	NS=56;AF=0.008;AC=1;s50=0.12;LBS=5,4,198,46,1,2,14,19;OBS=30,7,2201,860,9,2,367,153;STR=0.011;STZ=0.637;CBR=-0.022;CBZ=-1.306;QBR=0.028;QBZ=1.703;MBR=0.178;MSR=0.007;MBZ=10.626;IOR=0.666;IOZ=-4.855;IOH=0.010;IOD=-0.004;AOI=-120.292;AOZ=-115.437;ABE=0.592;ABZ=8.324;BCS=-1539.183;FIC=-13.390;LQR=0.072;MQ0=0.000;MQ10=0.470;MQ20=0.682;MQ30=0.849;MENDEL=0;SVM=-2.6952509;AN=112;EFF=INTERGENIC(LOW||||||||)
1	84307	.	C	A	0.0	SVM	NS=149;AF=0.025;AC=8;s50=0.33;LBS=141,153,106,95,5,17,11,8;OBS=2023,743,4076,1964,13,2,8,0;STR=-0.057;STZ=-5.333;CBR=0.036;CBZ=3.333;QBR=-0.124;QBZ=-11.630;MBR=-0.222;MSR=-0.035;MBZ=-20.867;IOR=0.307;IOZ=-7.149;IOH=0.002;IOD=-0.001;AOI=-445.410;AOZ=-438.260;ABE=0.587;ABZ=13.751;BCS=-9640.537;FIC=-9.025;LQR=0.053;MQ0=0.000;MQ10=0.112;MQ20=0.599;MQ30=0.865;MENDEL=0;SVM=-1.7717041;AN=298;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|)
1	84492	.	C	G	0.0	SVM	NS=188;AF=0.075;AC=30;s50=0.41;LBS=6,23,264,147,174,122,3,1;OBS=2,1,4457,1606,1668,428,3,1;STR=-0.061;STZ=-5.527;CBR=-0.041;CBZ=-3.659;QBR=0.023;QBZ=2.093;MBR=-0.311;MSR=-0.007;MBZ=-28.125;IOR=0.129;IOZ=-6.900;IOH=0.000;IOD=-0.001;AOI=-358.397;AOZ=-351.497;ABE=0.610;ABZ=15.702;BCS=-7188.416;FIC=-1.883;LQR=0.080;MQ0=0.000;MQ10=0.146;MQ20=0.577;MQ30=0.871;MENDEL=1;SVM=-1.590133;AN=376;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|)
1	85030	.	G	T	0.0	SVM	NS=360;AF=0.001;AC=1;s50=0.77;LBS=1,3,8,3,124,37,53,16;OBS=4,3,0,2,3815,2091,228,72;STR=-0.051;STZ=-4.020;CBR=0.155;CBZ=12.218;QBR=-0.261;QBZ=-20.541;MBR=0.086;MSR=-0.034;MBZ=6.742;IOR=0.204;IOZ=-5.912;IOH=0.002;IOD=0.001;AOI=-63.482;AOZ=-57.570;ABE=0.723;ABZ=12.186;BCS=-159.309;FIC=-19.693;LQR=0.036;MQ0=0.000;MQ10=0.691;MQ20=0.771;MQ30=0.932;MENDEL=0;SVM=-1.5933322;AN=720;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	85063	.	T	C	0.0	SVM	NS=317;AF=0.027;AC=18;s50=0.69;LBS=2,14,44,6,1,3,245,339;OBS=1,4,1566,658,0,0,5288,2148;STR=0.007;STZ=0.644;CBR=0.081;CBZ=8.003;QBR=0.217;QBZ=21.354;MBR=-0.633;MSR=-0.052;MBZ=-62.200;IOR=0.085;IOZ=-7.357;IOH=0.002;IOD=0.002;AOI=-357.145;AOZ=-349.788;ABE=0.548;ABZ=5.755;BCS=-9533.639;FIC=-2.391;LQR=0.062;MQ0=0.000;MQ10=0.237;MQ20=0.426;MQ30=0.787;MENDEL=0;SVM=-1.0544606;AN=634;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	85150	.	G	A	0.0	SVM	NS=158;AF=0.130;AC=44;s50=0.35;LBS=19,38,1,2,172,207,3,1;OBS=1163,617,0,0,3738,2358,2,2;STR=-0.035;STZ=-3.071;CBR=-0.030;CBZ=-2.684;QBR=0.052;QBZ=4.620;MBR=-0.256;MSR=0.010;MBZ=-22.721;IOR=0.079;IOZ=-6.842;IOH=0.002;IOD=0.001;AOI=-308.513;AOZ=-301.671;ABE=0.648;ABZ=22.065;BCS=-5466.826;FIC=-1.096;LQR=0.052;MQ0=0.000;MQ10=0.139;MQ20=0.591;MQ30=0.874;MENDEL=0;SVM=-2.1634635;AN=316;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	85406	.	C	T	0.0	SVM	NS=248;AF=0.002;AC=1;s50=0.54;LBS=1,4,35,32,1,3,21,15;OBS=1,4,2540,1083,2,1,958,331;STR=-0.041;STZ=-2.860;CBR=0.038;CBZ=2.631;QBR=0.023;QBZ=1.615;MBR=-0.383;MSR=-0.041;MBZ=-26.862;IOR=0.267;IOZ=-4.683;IOH=0.001;IOD=-0.001;AOI=-320.275;AOZ=-315.592;ABE=0.469;ABZ=-3.878;BCS=-4911.612;FIC=-55.593;LQR=0.021;MQ0=0.000;MQ10=0.304;MQ20=0.550;MQ30=0.808;MENDEL=0;SVM=-1.6779067;AN=496;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	85420	rs4030341	T	G	0.0	SVM	NS=265;AF=0.018;AC=10;s50=0.57;LBS=7,5,1,2,31,12,234,135;OBS=3,1,0,1,363,145,3041,1152;STR=0.008;STZ=0.527;CBR=0.008;CBZ=0.544;QBR=0.065;QBZ=4.451;MBR=-0.075;MSR=-0.027;MBZ=-5.170;IOR=0.150;IOZ=-5.330;IOH=0.001;IOD=-0.000;AOI=-115.179;AOZ=-109.850;ABE=0.640;ABZ=11.116;BCS=-994.298;FIC=-5.356;LQR=0.081;MQ0=0.000;MQ10=0.294;MQ20=0.542;MQ30=0.798;MENDEL=0;SVM=-1.7721559;AN=530;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	85529	rs143634556	G	A	0.0	SVM	NS=195;AF=0.032;AC=13;s50=0.41;LBS=61,37,3,2,116,80,3,0;OBS=1399,773,4,1,4504,2747,1,2;STR=-0.020;STZ=-1.936;CBR=0.030;CBZ=2.885;QBR=-0.061;QBZ=-5.915;MBR=0.064;MSR=-0.082;MBZ=6.260;IOR=0.140;IOZ=-7.016;IOH=0.001;IOD=0.001;AOI=-363.251;AOZ=-356.235;ABE=0.665;ABZ=30.106;BCS=-6467.105;FIC=-6.509;LQR=0.030;MQ0=0.000;MQ10=0.328;MQ20=0.599;MQ30=0.840;MENDEL=0;SVM=-1.5408027;AN=390;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	85638	.	T	C	0.0	SVM	NS=229;AF=0.006;AC=3;s50=0.50;LBS=5,15,44,30,7,8,261,199;OBS=24,6,793,440,2,2,3003,1296;STR=0.050;STZ=3.700;CBR=0.003;CBZ=0.230;QBR=0.131;QBZ=9.726;MBR=-0.016;MSR=-0.017;MBZ=-1.202;IOR=0.506;IOZ=-5.740;IOH=0.013;IOD=0.007;AOI=-248.174;AOZ=-242.434;ABE=0.531;ABZ=3.108;BCS=-3916.026;FIC=-24.489;LQR=0.088;MQ0=0.000;MQ10=0.178;MQ20=0.513;MQ30=0.734;MENDEL=0;SVM=-1.6838025;AN=458;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	85876	.	A	C	0.0	SVM	NS=236;AF=0.020;AC=10;s50=0.51;LBS=146,83,37,29,1,1,7,7;OBS=3416,1499,1047,408,0,1,62,30;STR=-0.022;STZ=-1.790;CBR=-0.036;CBZ=-2.885;QBR=0.033;QBZ=2.636;MBR=-0.241;MSR=-0.078;MBZ=-19.274;IOR=0.727;IOZ=-5.825;IOH=0.013;IOD=-0.001;AOI=-277.239;AOZ=-271.413;ABE=0.540;ABZ=4.167;BCS=-5413.004;FIC=-6.934;LQR=0.044;MQ0=0.000;MQ10=0.082;MQ20=0.447;MQ30=0.740;MENDEL=1;SVM=-1.1108008;AN=472;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	85942	.	G	A	0.0	SVM	NS=277;AF=0.007;AC=4;s50=0.60;LBS=46,22,7,3,157,99,4,8;OBS=280,117,1,0,1469,899,2,1;STR=-0.061;STZ=-3.233;CBR=-0.040;CBZ=-2.096;QBR=-0.005;QBZ=-0.282;MBR=-0.285;MSR=-0.006;MBZ=-14.970;IOR=0.181;IOZ=-4.259;IOH=0.004;IOD=0.003;AOI=-111.495;AOZ=-107.236;ABE=0.346;ABZ=-7.900;BCS=-973.309;FIC=-11.938;LQR=0.105;MQ0=0.000;MQ10=0.119;MQ20=0.438;MQ30=0.657;MENDEL=0;SVM=-0.97202234;AN=554;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	85988	.	C	T	0.0	SVM	NS=336;AF=0.006;AC=4;s50=0.73;LBS=1,3,87,93,1,1,19,21;OBS=0,1,1790,1123,4,2,241,127;STR=-0.026;STZ=-1.491;CBR=0.006;CBZ=0.347;QBR=-0.117;QBZ=-6.706;MBR=-0.294;MSR=0.033;MBZ=-16.847;IOR=0.268;IOZ=-4.375;IOH=0.015;IOD=0.013;AOI=-100.657;AOZ=-96.282;ABE=0.239;ABZ=-11.811;BCS=-766.619;FIC=-13.000;LQR=0.063;MQ0=0.000;MQ10=0.083;MQ20=0.307;MQ30=0.537;MENDEL=1;SVM=-0.40143925;AN=672;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	86000	rs140628094	A	C	0.0	PASS	NS=367;AF=0.004;AC=3;s50=0.80;LBS=45,36,8,4,1,0,1,0;OBS=2063,1539,60,37,0,0,5,2;STR=-0.014;STZ=-0.881;CBR=0.012;CBZ=0.744;QBR=-0.004;QBZ=-0.256;MBR=0.024;MSR=0.041;MBZ=1.440;IOR=0.264;IOZ=-4.414;IOH=0.000;IOD=-0.002;AOI=-28.891;AOZ=-24.477;ABE=0.632;ABZ=5.453;BCS=-338.587;FIC=-1.038;LQR=0.025;MQ0=0.000;MQ10=0.102;MQ20=0.279;MQ30=0.474;MENDEL=0;SVM=1.5135595;AN=734;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	86018	rs142878000	C	G	0.0	SVM	NS=290;AF=0.002;AC=1;s50=0.63;LBS=3,1,32,19,15,4,0,1;OBS=1,4,1671,1546,643,436,4,3;STR=-0.066;STZ=-4.358;CBR=-0.002;CBZ=-0.118;QBR=-0.029;QBZ=-1.887;MBR=-0.402;MSR=0.030;MBZ=-26.344;IOR=0.386;IOZ=-4.362;IOH=0.014;IOD=0.011;AOI=-287.464;AOZ=-283.103;ABE=0.387;ABZ=-7.677;BCS=-3734.559;FIC=-50.887;LQR=0.016;MQ0=0.000;MQ10=0.080;MQ20=0.233;MQ30=0.414;MENDEL=0;SVM=-0.18110194;AN=580;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	86028	rs114608975	T	C	0.0	PASS	NS=317;AF=0.005;AC=3;s50=0.69;LBS=7,18,15,18,4,9,134,100;OBS=10,8,253,211,0,0,1963,1300;STZ=0.038;STZ=2.317;CBZ=-0.040;CBZ=-2.423;QBZ=0.030;QBZ=1.819;MBR=0.135;MSR=0.056;MBZ=8.214;IOZ=0.462;IOH=-4.543;IOD=0.002;IOD=-0.003;AOZ=-118.415;AOZ=-113.871;ABZ=0.590;ABZ=7.718;BCS=-1846.763;FIC=-3.940;LQR=0.067;MQ10=0.000;MQ10=0.093;MQ20=0.245;MQ30=0.436;MENDEL=1;SVM=0.7624703;AN=634;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	86029	.	G	A	0.0	SVM	NS=302;AF=0.003;AC=2;s50=0.66;LBS=12,19,4,2,97,94,2,11;OBS=175,69,0,1,2155,1509,2,0;STR=-0.063;STZ=-3.958;CBR=-0.023;CBZ=-1.429;QBR=-0.075;QBZ=-4.692;MBR=-0.255;MSR=0.050;MBZ=-15.960;IOR=0.130;IOZ=-4.490;IOH=0.006;IOD=0.005;AOI=-66.850;AOZ=-62.360;ABE=0.245;ABZ=-9.666;BCS=-523.100;FIC=-19.059;LQR=0.054;MQ0=0.000;MQ10=0.084;MQ20=0.234;MQ30=0.424;MENDEL=0;SVM=-0.087064532;AN=604;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	86075	.	C	T	0.0	SVM	NS=286;AF=0.015;AC=9;s50=0.62;LBS=4,0,78,37,3,0,22,1;OBS=0,0,1616,1034,2,1,216,166;STR=0.030;STZ=1.664;CBR=0.014;CBZ=0.769;QBR=-0.090;QBZ=-4.972;MBR=-0.271;MSR=-0.013;MBZ=-14.901;IOR=0.143;IOZ=-4.242;IOH=0.000;IOD=-0.001;AOI=-108.109;AOZ=-103.867;ABE=0.397;ABZ=-5.503;BCS=-760.082;FIC=-6.121;LQR=0.044;MQ0=0.000;MQ10=0.112;MQ20=0.398;MQ30=0.659;MENDEL=0;SVM=-0.51995324;AN=572;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	86282	.	T	G	0.0	SVM	NS=331;AF=0.001;AC=1;s50=0.72;LBS=9,17,1,11,3,17,108,69;OBS=1,4,0,0,18,16,1155,1178;STR=-0.008;STZ=-0.393;CBR=-0.042;CBZ=-2.047;QBR=0.005;QBZ=0.267;MBR=0.084;MSR=0.059;MBZ=4.070;IOR=0.236;IOZ=-4.021;IOH=0.000;IOD=-0.002;AOI=-13.040;AOZ=-9.020;ABE=0.514;ABZ=0.323;BCS=-117.673;FIC=-2.227;LQR=0.077;MQ0=0.000;MQ10=0.124;MQ20=0.399;MQ30=0.686;MENDEL=0;SVM=-0.055980482;AN=662;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	86299	.	T	C	0.0	SVM	NS=312;AF=0.003;AC=2;s50=0.68;LBS=7,3,4,3,1,4,75,30;OBS=0,1,48,69,0,0,1015,1332;STR=0.009;STZ=0.459;CBR=0.015;CBZ=0.725;QBR=-0.100;QBZ=-4.949;MBR=-0.196;MSR=0.048;MBZ=-9.736;IOR=0.070;IOZ=-3.661;IOH=0.003;IOD=0.003;AOI=-40.607;AOZ=-36.946;ABE=0.291;ABZ=-5.685;BCS=-204.244;FIC=-8.711;LQR=0.043;MQ0=0.000;MQ10=0.101;MQ20=0.276;MQ30=0.479;MENDEL=0;SVM=-0.013644116;AN=624;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	86303	rs2949417	G	T	0.0	SVM	NS=282;AF=0.005;AC=3;s50=0.62;LBS=11,4,14,0,84,38,63,20;OBS=6,2,1,2,799,1023,304,440;STZ=0.027;STZ=1.386;CBZ=-0.043;CBZ=-2.203;QBZ=-0.031;QBZ=-1.571;MBR=-0.291;MSR=0.061;MBZ=-14.753;IOZ=0.455;IOH=-3.606;IOD=0.006;IOD=0.002;AOZ=-237.407;AOZ=-233.801;ABZ=0.449;ABZ=-3.042;BCS=-2647.310;FIC=-15.476;LQR=0.074;MQ10=0.000;MQ10=0.098;MQ20=0.281;MQ30=0.491;MENDEL=0;SVM=-0.09756942;AN=564;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	86329	.	G	T	0.0	PASS	NS=300;AF=0.003;AC=2;s50=0.66;LBS=8,2,9,1,69,16,15,2;OBS=2,2,2,0,1945,1694,72,64;STR=0.002;STZ=0.122;CBR=0.017;CBZ=1.046;QBR=-0.105;QBZ=-6.466;MBR=-0.222;MSR=0.024;MBZ=-13.656;IOR=0.268;IOZ=-4.036;IOH=0.017;IOD=0.016;AOI=-41.943;AOZ=-37.907;ABE=0.341;ABZ=-5.170;BCS=-250.589;FIC=-11.418;LQR=0.026;MQ0=0.000;MQ10=0.081;MQ20=0.189;MQ30=0.334;MENDEL=0;SVM=0.29996865;AN=600;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	86331	rs115209712	A	G	0.0	PASS	NS=309;AF=0.011;AC=7;s50=0.67;LBS=86,38,7,0,29,19,7,2;OBS=1613,1465,1,2,544,431,4,1;STZ=-0.029;STZ=-1.847;CBZ=0.001;CBZ=0.066;QBZ=0.002;QBZ=0.108;MBR=-0.013;MSR=0.026;MBZ=-0.820;IOZ=0.284;IOH=-4.474;IOD=0.001;IOD=-0.001;AOZ=-252.915;AOZ=-248.441;ABZ=0.589;ABZ=7.202;BCS=-3640.950;FIC=-4.217;LQR=0.041;MQ10=0.000;MQ10=0.096;MQ20=0.233;MQ30=0.393;MENDEL=0;SVM=2.0647022;AN=618;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	86340	.	C	T	0.0	PASS	NS=331;AF=0.003;AC=2;s50=0.72;LBS=10,0,147,22,18,1,34,6;OBS=5,7,1815,1597,0,1,115,92;STR=-0.011;STZ=-0.655;CBR=-0.004;CBZ=-0.227;QBR=-0.043;QBZ=-2.580;MBR=-0.267;MSR=-0.006;MBZ=-16.052;IOR=0.415;IOZ=-4.259;IOH=0.032;IOD=0.028;AOI=-58.160;AOZ=-53.902;ABE=0.281;ABZ=-7.537;BCS=-468.486;FIC=-14.761;LQR=0.055;MQ0=0.000;MQ10=0.086;MQ20=0.230;MQ30=0.375;MENDEL=0;SVM=0.13880399;AN=662;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	86749	.	A	G	0.0	PASS	NS=336;AF=0.001;AC=1;s50=0.73;LBS=64,32,8,0,43,8,4,1;OBS=1066,711,0,0,741,510,1,0;STR=0.008;STZ=0.419;CBR=-0.002;CBZ=-0.120;QBR=0.123;QBZ=6.781;MBR=0.050;MSR=-0.028;MBZ=2.726;IOR=0.059;IOZ=-3.994;IOH=0.000;IOD=-0.000;AOI=-366.174;AOZ=-362.180;ABE=0.395;ABZ=-11.146;BCS=-5359.539;FIC=-60.446;LQR=0.046;MQ0=0.000;MQ10=0.088;MQ20=0.351;MQ30=0.600;MENDEL=0;SVM=0.095055574;AN=672;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	86947	rs142585659	T	C	0.0	PASS	NS=386;AF=0.002;AC=2;s50=0.83;LBS=8,3,7,4,2,3,33,28;OBS=0,1,20,25,0,0,554,497;STR=0.033;STZ=1.082;CBR=0.012;CBZ=0.386;QBR=0.007;QBZ=0.230;MBR=0.018;MSR=0.050;MBZ=0.591;IOR=0.121;IOZ=-2.698;IOH=0.000;IOD=-0.001;AOI=-21.838;AOZ=-19.140;ABE=0.630;ABZ=2.403;BCS=-133.696;FIC=-0.777;LQR=0.062;MQ0=0.000;MQ10=0.161;MQ20=0.283;MQ30=0.471;MENDEL=0;SVM=1.8720026;AN=772;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87157	.	C	G	0.0	PASS	NS=389;AF=0.029;AC=21;s50=0.83;LBS=1,8,78,113,3,24,1,10;OBS=2,1,1273,1319,52,49,1,5;STR=-0.009;STZ=-0.467;CBR=-0.006;CBZ=-0.316;QBR=-0.107;QBZ=-5.565;MBR=-0.287;MSR=-0.036;MBZ=-14.901;IOR=0.317;IOZ=-4.392;IOH=0.001;IOD=-0.003;AOI=-29.622;AOZ=-25.230;ABE=0.139;ABZ=-8.428;BCS=-246.734;FIC=-0.302;LQR=0.075;MQ0=0.000;MQ10=0.066;MQ20=0.188;MQ30=0.352;MENDEL=4;SVM=0.79677374;AN=778;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87176	.	C	T	0.0	PASS	NS=385;AF=0.025;AC=18;s50=0.82;LBS=18,0,230,71,10,4,21,5;OBS=7,3,2922,3496,0,2,30,38;STR=0.003;STZ=0.220;CBR=-0.003;CBZ=-0.226;QBR=-0.025;QBZ=-2.050;MBR=-0.122;MSR=-0.028;MBZ=-9.804;IOR=0.282;IOZ=-5.506;IOH=0.000;IOD=-0.001;AOI=-18.405;AOZ=-12.898;ABE=0.118;ABZ=-7.350;BCS=-160.653;FIC=-0.175;LQR=0.048;MQ0=0.000;MQ10=0.053;MQ20=0.163;MQ30=0.392;MENDEL=3;SVM=1.5648765;AN=770;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87190	rs1524602	G	A	0.0	PASS	NS=316;AF=0.468;AC=283;s50=0.65;LBS=300,213,4,0,167,60,2,2;OBS=2628,3095,2,2,1542,1970,1,0;STZ=-0.020;STZ=-1.887;CBZ=-0.029;CBZ=-2.741;QBZ=-0.091;QBZ=-8.780;MBR=-0.114;MSR=-0.023;MBZ=-10.931;IOZ=0.077;IOH=-7.782;IOD=0.000;IOD=-0.000;AOZ=-861.398;AOZ=-853.616;ABZ=0.538;ABZ=5.120;BCS=-26005.618;FIC=0.254;LQR=0.074;MQ10=0.000;MQ10=0.065;MQ20=0.179;MQ30=0.406;MENDEL=1;SVM=1.6079077;AN=632;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87303	rs113433457	G	A	0.0	SVM	NS=359;AF=0.017;AC=12;s50=0.77;LBS=10,1,0,0,22,61,0,1;OBS=86,27,11,8,542,399,1,0;STZ=-0.116;STZ=-3.754;CBZ=-0.055;CBZ=-1.775;QBZ=-0.105;QBZ=-3.399;MBR=-0.301;MSR=-0.025;MBZ=-9.781;IOZ=0.774;IOH=-2.386;IOD=0.013;IOD=-0.006;AOZ=-50.864;AOZ=-48.478;ABZ=0.248;ABZ=-7.235;BCS=-322.767;FIC=-1.874;LQR=0.082;MQ10=0.000;MQ10=0.121;MQ20=0.269;MQ30=0.582;MENDEL=0;SVM=-0.55671161;AN=718;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87360	.	C	T	0.0	PASS	NS=387;AF=0.001;AC=1;s50=0.84;LBS=5,0,38,11,4,0,8,0;OBS=0,1,250,368,0,0,8,15;STR=0.020;STZ=0.494;CBR=-0.076;CBZ=-1.928;QBR=0.008;QBZ=0.214;MBR=0.109;MSR=-0.075;MBZ=2.755;IOR=0.196;IOZ=-2.028;IOH=0.000;IOD=-0.001;AOI=-14.884;AOZ=-12.856;ABE=0.534;ABZ=0.716;BCS=-88.874;FIC=-0.163;LQR=0.082;MQ0=0.000;MQ10=0.105;MQ20=0.250;MQ30=0.504;MENDEL=0;SVM=1.5974977;AN=774;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87366	.	G	A	0.0	PASS	NS=385;AF=0.002;AC=2;s50=0.83;LBS=5,1,4,0,26,8,1,1;OBS=15,18,4,4,269,344,0,0;STR=-0.008;STZ=-0.194;CBR=-0.044;CBZ=-1.113;QBR=-0.040;QBZ=-1.029;MBR=0.065;MSR=-0.091;MBZ=1.652;IOR=0.678;IOZ=-1.916;IOH=0.002;IOD=-0.011;AOI=-18.797;AOZ=-16.881;ABE=0.573;ABZ=1.899;BCS=-150.627;FIC=-0.178;LQR=0.058;MQ0=0.000;MQ10=0.111;MQ20=0.259;MQ30=0.567;MENDEL=0;SVM=0.74657758;AN=770;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87409	rs139490478	C	T	0.0	PASS	NS=375;AF=0.024;AC=18;s50=0.81;LBS=0,0,131,36,0,0,10,46;OBS=0,2,723,675,0,2,364,248;STR=-0.072;STZ=-3.208;CBR=-0.062;CBZ=-2.787;QBR=-0.049;QBZ=-2.177;MBR=0.036;MSR=-0.136;MBZ=1.630;IOR=0.239;IOZ=-3.547;IOH=0.000;IOD=-0.002;AOI=-199.685;AOZ=-196.139;ABE=0.612;ABZ=11.369;BCS=-2312.066;FIC=-0.610;LQR=0.100;MQ0=0.000;MQ10=0.073;MQ20=0.204;MQ30=0.453;MENDEL=1;SVM=1.4668029;AN=750;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87548	.	A	T	0.0	SVM	NS=248;AF=0.017;AC=9;s50=0.54;LBS=148,250,12,16,16,17,46,59;OBS=1104,1373,3,0,1,3,283,433;STZ=0.042;STZ=2.393;CBZ=0.022;CBZ=1.235;QBZ=0.100;QBZ=5.634;MBR=-0.313;MSR=0.034;MBZ=-17.703;IOZ=0.227;IOH=-4.867;IOD=0.001;IOD=-0.002;AOZ=-172.745;AOZ=-167.878;ABZ=0.413;ABZ=-5.356;BCS=-2423.775;FIC=-5.472;LQR=0.136;MQ10=0.000;MQ10=0.153;MQ20=0.391;MQ30=0.635;MENDEL=1;SVM=-1.0345006;AN=496;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87563	.	T	C	0.0	SVM	NS=325;AF=0.055;AC=37;s50=0.69;LBS=0,4,13,14,0,2,58,62;OBS=2,0,562,538,0,1,1507,1349;STR=0.015;STZ=0.945;CBR=-0.024;CBZ=-1.533;QBR=0.057;QBZ=3.559;MBR=-0.310;MSR=0.021;MBZ=-19.484;IOR=0.135;IOZ=-4.387;IOH=0.000;IOD=-0.001;AOI=-293.712;AOZ=-289.325;ABE=0.459;ABZ=-2.427;BCS=-4331.055;FIC=-1.101;LQR=0.036;MQ0=0.000;MQ10=0.148;MQ20=0.337;MQ30=0.665;MENDEL=2;SVM=-0.05640833;AN=650;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87584	.	T	C	0.0	PASS	NS=460;AF=0.001;AC=1;s50=0.99;LBS=0,7,3,3,0,4,64,54;OBS=1,1,53,37,1,0,1627,1378;STR=-0.016;STZ=-0.877;CBR=0.015;CBZ=0.812;QBR=0.043;QBZ=2.373;MBR=0.072;MSR=0.034;MBZ=3.984;IOR=0.136;IOZ=-4.363;IOH=0.000;IOD=-0.001;AOI=-27.742;AOZ=-23.379;ABE=0.547;ABZ=1.897;BCS=-351.632;FIC=-1.203;LQR=0.039;MQ0=0.000;MQ10=0.136;MQ20=0.317;MQ30=0.688;MENDEL=0;SVM=3.588551;AN=920;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87647	rs146836579	T	C	0.0	PASS	NS=437;AF=0.001;AC=1;s50=0.94;LBS=8,6,19,29,1,12,81,64;OBS=1,0,119,96,1,1,999,1016;STR=-0.034;STZ=-1.604;CBR=0.032;CBZ=1.490;QBR=-0.061;QBZ=-2.884;MBR=0.122;MSR=0.014;MBZ=5.741;IOR=0.163;IOZ=-3.921;IOH=0.000;IOD=-0.001;AOI=-66.821;AOZ=-62.899;ABE=0.471;ABZ=-1.234;BCS=-861.085;FIC=-7.444;LQR=0.080;MQ0=0.000;MQ10=0.135;MQ20=0.373;MQ30=0.848;MENDEL=0;SVM=0.87593243;AN=874;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87683	rs113097605	T	C	0.0	PASS	NS=386;AF=0.128;AC=99;s50=0.79;LBS=2,2,13,1,0,1,40,15;OBS=0,0,68,96,1,0,637,952;STZ=-0.008;STZ=-0.354;CBZ=0.015;CBZ=0.621;QBZ=-0.066;QBZ=-2.773;MBR=-0.304;MSR=0.063;MBZ=-12.746;IOZ=0.094;IOH=-3.103;IOD=0.006;IOD=0.005;AOZ=-64.064;AOZ=-60.961;ABZ=0.435;ABZ=-2.593;BCS=-369.338;FIC=0.328;LQR=0.038;MQ10=0.000;MQ10=0.084;MQ20=0.242;MQ30=0.522;MENDEL=8;SVM=0.84064054;AN=772;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87702	rs111305205	G	A	0.0	PASS	NS=361;AF=0.129;AC=93;s50=0.75;LBS=1,29,2,3,41,64,0,3;OBS=53,146,1,6,414,827,0,4;STR=0.049;STZ=1.855;CBR=0.075;CBZ=2.842;QBR=-0.034;QBZ=-1.291;MBR=-0.321;MSR=0.034;MBZ=-12.197;IOR=0.574;IOZ=-2.812;IOH=0.009;IOD=0.002;AOI=-79.868;AOZ=-77.055;ABE=0.453;ABZ=-2.045;BCS=-608.622;FIC=0.149;LQR=0.086;MQ0=0.000;MQ10=0.123;MQ20=0.300;MQ30=0.558;MENDEL=8;SVM=0.3315526;AN=722;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87805	.	T	C	0.0	PASS	NS=305;AF=0.093;AC=59;s50=0.65;LBS=7,3,13,14,1,6,65,95;OBS=0,2,141,305,0,1,1112,2479;STR=-0.005;STZ=-0.295;CBR=-0.030;CBZ=-1.935;QBR=0.010;QBZ=0.628;MBR=-0.297;MSR=0.055;MBZ=-18.857;IOR=0.117;IOZ=-4.767;IOH=0.003;IOD=0.003;AOI=-112.505;AOZ=-107.739;ABE=0.424;ABZ=-3.510;BCS=-1265.539;FIC=-0.091;LQR=0.044;MQ0=0.000;MQ10=0.103;MQ20=0.246;MQ30=0.558;MENDEL=6;SVM=0.58409696;AN=610;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87826	rs3855952	A	G	0.0	PASS	NS=387;AF=0.001;AC=1;s50=0.83;LBS=69,147,0,6,2,4,1,5;OBS=1784,2909,1,3,52,64,1,0;STR=-0.022;STZ=-1.507;CBR=-0.005;CBZ=-0.342;QBR=0.055;QBZ=3.839;MBR=-0.258;MSR=0.105;MBZ=-17.859;IOR=0.173;IOZ=-4.901;IOH=0.000;IOD=-0.001;AOI=-31.696;AOZ=-26.795;ABE=0.256;ABZ=-5.641;BCS=-534.682;FIC=-2.453;LQR=0.044;MQ0=0.000;MQ10=0.121;MQ20=0.248;MQ30=0.578;MENDEL=0;SVM=0.63776559;AN=774;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87838	.	C	T	0.0	PASS	NS=343;AF=0.059;AC=42;s50=0.73;LBS=1,2,143,192,1,8,45,22;OBS=0,1,1987,2542,0,1,185,178;STR=-0.037;STZ=-2.618;CBR=0.003;CBZ=0.180;QBR=-0.078;QBZ=-5.443;MBR=-0.376;MSR=0.117;MBZ=-26.267;IOR=0.060;IOZ=-5.617;IOH=0.000;IOD=-0.000;AOI=-80.329;AOZ=-74.712;ABE=0.256;ABZ=-8.980;BCS=-782.757;FIC=-0.357;LQR=0.076;MQ0=0.000;MQ10=0.090;MQ20=0.221;MQ30=0.489;MENDEL=3;SVM=0.64754622;AN=686;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	87959	.	T	C	0.0	PASS	NS=387;AF=0.142;AC=110;s50=0.82;LBS=3,2,48,9,1,2,98,30;OBS=0,1,131,182,2,0,1177,2146;STR=-0.038;STZ=-2.277;CBR=0.004;CBZ=0.212;QBR=-0.126;QBZ=-7.597;MBR=-0.316;MSR=0.118;MBZ=-19.050;IOR=0.144;IOZ=-4.220;IOH=0.001;IOD=-0.000;AOI=-89.251;AOZ=-85.031;ABE=0.439;ABZ=-3.034;BCS=-709.586;FIC=0.250;LQR=0.048;MQ0=0.000;MQ10=0.095;MQ20=0.242;MQ30=0.557;MENDEL=11;SVM=0.6403246;AN=774;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	88137	.	C	T	0.0	PASS	NS=424;AF=0.001;AC=1;s50=0.91;LBS=15,8,161,164,2,10,11,8;OBS=1,3,2336,3174,0,2,15,22;STR=0.003;STZ=0.200;CBR=0.002;CBZ=0.181;QBR=-0.003;QBZ=-0.221;MBR=0.051;MSR=0.041;MBZ=3.778;IOR=0.144;IOZ=-5.951;IOH=0.000;IOD=-0.001;AOI=-12.525;AOZ=-6.574;ABE=0.346;ABZ=-3.164;BCS=-108.015;FIC=-1.971;LQR=0.058;MQ0=0.000;MQ10=0.121;MQ20=0.333;MQ30=0.820;MENDEL=0;SVM=0.45812375;AN=848;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	88169	rs940550	C	T	0.0	SVM	NS=142;AF=0.406;AC=111;s50=0.28;LBS=1,1,159,141,3,5,103,179;OBS=0,0,1450,3033,0,0,2320,4652;STZ=-0.010;STZ=-1.034;CBZ=-0.030;CBZ=-3.207;QBZ=0.067;QBZ=7.206;MBR=-0.347;MSR=0.064;MBZ=-37.115;IOZ=0.000;IOH=-8.133;IOD=0.000;IOD=0.000;AOZ=-1004.278;AOZ=-996.145;ABZ=0.498;ABZ=-0.298;BCS=-32890.963;FIC=0.145;LQR=0.048;MQ10=0.000;MQ10=0.090;MQ20=0.225;MQ30=0.580;MENDEL=6;SVM=-0.2819646;AN=284;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	88172	rs940551	G	A	0.0	PASS	NS=140;AF=0.382;AC=104;s50=0.29;LBS=22,80,6,4,205,212,8,4;OBS=275,691,3,2,3154,6793,4,1;STR=0.020;STZ=2.059;CBR=0.038;CBZ=3.921;QBR=-0.064;QBZ=-6.734;MBR=-0.169;MSR=0.047;MBZ=-17.667;IOR=0.142;IOZ=-7.769;IOH=0.004;IOD=0.003;AOI=-149.989;AOZ=-142.221;ABE=0.534;ABZ=2.067;BCS=-3301.038;FIC=0.622;LQR=0.045;MQ0=0.000;MQ10=0.076;MQ20=0.208;MQ30=0.562;MENDEL=6;SVM=0.056282302;AN=280;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	88188	rs148331237	C	A	0.0	PASS	NS=398;AF=0.005;AC=4;s50=0.86;LBS=23,33,89,95,9,2,5,4;OBS=183,421,2217,5597,0,2,1,0;STR=-0.011;STZ=-1.026;CBR=0.065;CBZ=5.960;QBR=-0.100;QBZ=-9.209;MBR=0.125;MSR=0.043;MBZ=11.505;IOR=0.070;IOZ=-6.347;IOH=0.000;IOD=-0.000;AOI=-116.416;AOZ=-110.068;ABE=0.593;ABZ=8.183;BCS=-2348.315;FIC=-2.182;LQR=0.028;MQ0=0.000;MQ10=0.096;MQ20=0.242;MQ30=0.606;MENDEL=0;SVM=1.1468489;AN=796;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	88216	rs2103136	A	G	0.0	SVM	NS=304;AF=0.100;AC=60;s50=0.66;LBS=102,104,3,1,38,16,10,1;OBS=843,1763,1,0,97,382,1,1;STZ=0.095;STZ=5.265;CBZ=0.104;CBZ=5.776;QBZ=0.041;QBZ=2.254;MBR=-0.364;MSR=-0.013;MBZ=-20.242;IOZ=0.141;IOH=-4.266;IOD=0.002;IOD=0.001;AOZ=-133.348;AOZ=-129.082;ABZ=0.430;ABZ=-3.764;BCS=-1348.997;FIC=-0.203;LQR=0.078;MQ10=0.000;MQ10=0.121;MQ20=0.301;MQ30=0.770;MENDEL=6;SVM=-0.43473683;AN=608;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	88265	rs940552	C	T	0.0	SVM	NS=210;AF=0.064;AC=28;s50=0.45;LBS=10,1,93,41,6,2,41,15;OBS=0,0,1078,2259,1,0,480,1122;STR=0.024;STZ=1.653;CBR=0.086;CBZ=6.072;QBR=-0.017;QBZ=-1.181;MBR=-0.374;MSR=0.023;MBZ=-26.294;IOR=0.039;IOZ=-4.999;IOH=0.000;IOD=-0.000;AOI=-375.997;AOZ=-370.998;ABE=0.552;ABZ=5.712;BCS=-5890.700;FIC=-2.119;LQR=0.037;MQ0=0.000;MQ10=0.135;MQ20=0.311;MQ30=0.782;MENDEL=2;SVM=-0.65681492;AN=420;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	88295	rs113378454	T	A	0.0	SVM	NS=244;AF=0.065;AC=33;s50=0.52;LBS=86,40,5,2,9,2,165,112;OBS=538,1118,1,2,1,1,1179,1835;STR=0.066;STZ=4.490;CBR=-0.022;CBZ=-1.526;QBR=0.024;QBZ=1.666;MBR=-0.389;MSR=-0.007;MBZ=-26.554;IOR=0.167;IOZ=-4.976;IOH=0.000;IOD=-0.001;AOI=-386.753;AOZ=-381.777;ABE=0.504;ABZ=0.347;BCS=-6483.828;FIC=-1.981;LQR=0.079;MQ0=0.000;MQ10=0.150;MQ20=0.310;MQ30=0.760;MENDEL=2;SVM=-0.49523067;AN=488;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	88316	rs113759966	G	A	0.0	PASS	NS=342;AF=0.001;AC=1;s50=0.74;LBS=17,12,10,2,147,178,12,0;OBS=232,348,2,1,1860,2979,1,0;STR=-0.010;STZ=-0.738;CBR=-0.000;CBZ=-0.010;QBR=0.044;QBZ=3.209;MBR=0.205;MSR=-0.058;MBZ=15.080;IOR=0.101;IOZ=-5.967;IOH=0.000;IOD=-0.001;AOI=-118.267;AOZ=-112.300;ABE=0.450;ABZ=-4.010;BCS=-2280.021;FIC=-22.700;LQR=0.061;MQ0=0.000;MQ10=0.136;MQ20=0.304;MQ30=0.685;MENDEL=0;SVM=0.83794842;AN=684;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	88332	rs113199939	A	C	0.0	SVM	NS=273;AF=0.138;AC=74;s50=0.58;LBS=54,244,3,14,0,8,2,2;OBS=2865,4073,171,322,1,1,0,1;STR=0.033;STZ=2.874;CBR=-0.016;CBZ=-1.366;QBR=0.066;QBZ=5.680;MBR=-0.345;MSR=-0.029;MBZ=-29.723;IOR=0.077;IOZ=-6.002;IOH=0.000;IOD=-0.000;AOI=-100.720;AOZ=-94.718;ABE=0.478;ABZ=-1.299;BCS=-1364.640;FIC=0.160;LQR=0.041;MQ0=0.000;MQ10=0.099;MQ20=0.235;MQ30=0.610;MENDEL=6;SVM=-0.079717067;AN=546;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	88362	.	G	A	0.0	PASS	NS=433;AF=0.001;AC=1;s50=0.94;LBS=10,4,10,3,115,189,6,2;OBS=42,83,1,2,1020,2618,2,0;STR=-0.023;STZ=-1.394;CBR=0.020;CBZ=1.242;QBR=0.084;QBZ=5.148;MBR=-0.025;MSR=-0.004;MBZ=-1.514;IOR=0.149;IOZ=-5.353;IOH=0.000;IOD=-0.001;AOI=-31.834;AOZ=-26.480;ABE=0.335;ABZ=-5.784;BCS=-493.812;FIC=-6.382;LQR=0.078;MQ0=0.000;MQ10=0.144;MQ20=0.356;MQ30=0.715;MENDEL=0;SVM=0.44396827;AN=866;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	88387	.	G	A	0.0	SVM	NS=183;AF=0.231;AC=83;s50=0.39;LBS=7,41,2,2,84,231,1,3;OBS=170,336,0,1,819,1669,0,0;STR=-0.006;STZ=-0.307;CBR=0.001;CBZ=0.069;QBR=0.031;QBZ=1.717;MBR=-0.217;MSR=0.063;MBZ=-11.894;IOR=0.045;IOZ=-4.627;IOH=0.000;IOD=-0.000;AOI=-131.392;AOZ=-126.764;ABE=0.580;ABZ=5.297;BCS=-1346.052;FIC=0.217;LQR=0.108;MQ0=0.000;MQ10=0.133;MQ20=0.371;MQ30=0.778;MENDEL=3;SVM=-1.1023669;AN=366;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	88463	.	A	G	0.0	SVM	NS=242;AF=0.054;AC=27;s50=0.52;LBS=99,75,1,3,8,13,6,0;OBS=1335,1921,0,0,156,236,2,1;STR=0.007;STZ=0.450;CBR=0.027;CBZ=1.603;QBR=-0.086;QBZ=-5.198;MBR=-0.305;MSR=0.027;MBZ=-18.416;IOR=0.114;IOZ=-4.818;IOH=0.005;IOD=0.004;AOI=-98.346;AOZ=-93.528;ABE=0.438;ABZ=-3.195;BCS=-683.726;FIC=-1.150;LQR=0.051;MQ0=0.000;MQ10=0.149;MQ20=0.329;MQ30=0.727;MENDEL=1;SVM=-0.63144225;AN=484;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	88706	.	G	A	0.0	SVM	NS=186;AF=0.013;AC=5;s50=0.40;LBS=15,31,6,9,116,209,4,8;OBS=54,149,3,9,468,1323,0,9;STZ=-0.004;STZ=-0.176;CBZ=-0.027;CBZ=-1.205;QBZ=0.061;QBZ=2.738;MBR=-0.245;MSR=-0.005;MBZ=-10.940;IOZ=0.517;IOH=-4.393;IOD=0.016;IOD=0.005;AOZ=-54.104;AOZ=-49.711;ABZ=0.424;ABZ=-3.297;BCS=-440.936;FIC=-4.855;LQR=0.157;MQ10=0.000;MQ10=0.177;MQ20=0.397;MQ30=0.634;MENDEL=0;SVM=-1.2984907;AN=372;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	88710	.	C	G	0.0	SVM	NS=272;AF=0.011;AC=6;s50=0.58;LBS=3,3,99,74,8,50,3,5;OBS=1,1,493,1616,57,117,1,0;STR=-0.059;STZ=-2.813;CBR=0.006;CBZ=0.275;QBR=-0.109;QBZ=-5.197;MBR=0.140;MSR=0.035;MBZ=6.711;IOR=0.170;IOZ=-3.831;IOH=0.000;IOD=-0.001;AOI=-55.945;AOZ=-52.113;ABE=0.515;ABZ=0.728;BCS=-537.107;FIC=-1.444;LQR=0.092;MQ0=0.000;MQ10=0.214;MQ20=0.457;MQ30=0.721;MENDEL=0;SVM=-1.0471259;AN=544;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	89149	.	A	T	0.0	SVM	NS=240;AF=0.041;AC=19;s50=0.52;LBS=167,235,3,2,3,3,21,28;OBS=1646,2417,2,5,1,3,117,222;STR=0.032;STZ=2.152;CBR=-0.007;CBZ=-0.440;QBR=-0.026;QBZ=-1.752;MBR=-0.240;MSR=0.010;MBZ=-15.956;IOR=0.283;IOZ=-5.266;IOH=0.015;IOD=0.013;AOI=-78.073;AOZ=-72.807;ABE=0.368;ABZ=-5.871;BCS=-631.609;FIC=-1.241;LQR=0.093;MQ0=0.000;MQ10=0.089;MQ20=0.323;MQ30=0.847;MENDEL=0;SVM=-0.95294408;AN=480;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	89519	.	G	A	0.0	SVM	NS=291;AF=0.005;AC=3;s50=0.63;LBS=18,15,11,2,138,113,5,3;OBS=96,122,1,0,2287,2875,2,0;STZ=0.001;STZ=0.071;CBZ=-0.028;CBZ=-2.044;QBZ=-0.047;QBZ=-3.456;MBR=-0.118;MSR=0.003;MBZ=-8.622;IOZ=0.087;IOH=-5.612;IOD=0.000;IOD=-0.000;AOZ=-50.154;AOZ=-44.541;ABZ=0.536;ABZ=1.413;BCS=-207.401;FIC=-5.626;LQR=0.050;MQ10=0.000;MQ10=0.153;MQ20=0.415;MQ30=0.793;MENDEL=0;SVM=-0.62278249;AN=582;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),DOWNSTREAM(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|)
1	90089	.	T	A	0.0	SVM	NS=215;AF=0.002;AC=1;s50=0.46;LBS=4,2,0,0,1,1,14,47;OBS=10,44,1,0,0,0,611,1222;STR=0.051;STZ=2.215;CBR=-0.125;CBZ=-5.436;QBR=-0.052;QBZ=-2.237;MBR=-0.193;MSR=-0.015;MBZ=-8.382;IOR=0.094;IOZ=-3.100;IOH=0.000;IOD=-0.001;AOI=-23.064;AOZ=-19.964;ABE=0.663;ABZ=4.651;BCS=-86.749;FIC=-3.621;LQR=0.034;MQ0=0.000;MQ10=0.211;MQ20=0.441;MQ30=0.772;MENDEL=0;SVM=-1.035603;AN=430;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	90101	.	T	C	0.0	SVM	NS=145;AF=0.003;AC=1;s50=0.32;LBS=0,0,1,0,0,0,13,19;OBS=0,2,20,65,0,1,426,627;STZ=0.090;STZ=3.034;CBZ=-0.032;CBZ=-1.091;QBZ=-0.026;QBZ=-0.861;MBR=-0.084;MSR=0.006;MBZ=-2.827;IOZ=0.345;IOH=-2.371;IOD=0.000;IOD=-0.003;AOZ=-42.514;AOZ=-40.143;ABZ=0.640;ABZ=4.468;BCS=-173.563;FIC=-3.964;LQR=0.028;MQ10=0.000;MQ10=0.127;MQ20=0.399;MQ30=0.847;MENDEL=0;SVM=-1.6380287;AN=290;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	91175	.	A	C	0.0	SVM	NS=115;AF=0.004;AC=1;s50=0.25;LBS=106,138,15,2,7,6,11,5;OBS=2565,2198,34,20,0,0,1,0;STR=-0.019;STZ=-1.313;CBR=0.063;CBZ=4.400;QBR=-0.029;QBZ=-2.003;MBR=0.071;MSR=0.001;MBZ=4.958;IOR=0.038;IOZ=-5.063;IOH=0.000;IOD=-0.000;AOI=-17.317;AOZ=-12.254;ABE=0.469;ABZ=-0.848;BCS=-138.327;FIC=-0.154;LQR=0.051;MQ0=0.000;MQ10=0.412;MQ20=0.660;MQ30=0.952;MENDEL=0;SVM=-2.9301238;AN=230;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),UPSTREAM(LOW||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	91536	rs77418980	G	T	0.0	SVM	NS=129;AF=0.056;AC=15;s50=0.28;LBS=3,3,3,4,34,67,37,57;OBS=0,4,4,0,1859,3448,2165,4580;STZ=0.031;STZ=3.388;CBZ=0.070;CBZ=7.676;QBZ=-0.008;QBZ=-0.856;MBR=-0.742;MSR=-0.000;MBZ=-81.490;IOZ=0.139;IOH=-7.033;IOD=0.000;IOD=-0.000;AOZ=-1113.595;AOZ=-1106.562;ABZ=0.448;ABZ=-6.054;BCS=-32952.768;FIC=-1.943;LQR=0.016;MQ10=0.000;MQ10=0.466;MQ20=0.584;MQ30=0.760;MENDEL=0;SVM=-1.2787564;AN=258;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),UPSTREAM(LOW||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	91581	rs151118460	G	A	0.0	SVM	NS=91;AF=0.062;AC=12;s50=0.20;LBS=111,148,15,11,312,204,9,9;OBS=1026,1791,0,2,2043,3048,2,0;STR=0.036;STZ=3.238;CBR=-0.080;CBZ=-7.093;QBR=-0.114;QBZ=-10.147;MBR=-0.396;MSR=0.018;MBZ=-35.177;IOR=0.078;IOZ=-6.886;IOH=0.001;IOD=0.000;AOI=-480.414;AOZ=-473.529;ABE=0.545;ABZ=5.484;BCS=-10738.303;FIC=-2.436;LQR=0.089;MQ0=0.000;MQ10=0.240;MQ20=0.458;MQ30=0.847;MENDEL=0;SVM=-1.7015898;AN=182;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),UPSTREAM(LOW||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	92633	rs149776517	C	T	0.0	SVM	NS=207;AF=0.005;AC=2;s50=0.44;LBS=40,2,462,188,12,7,33,12;OBS=7,1,7877,10918,0,1,49,79;STR=0.006;STZ=0.812;CBR=0.011;CBZ=1.495;QBR=-0.012;QBZ=-1.658;MBR=0.102;MSR=0.051;MBZ=13.964;IOR=0.092;IOZ=-9.447;IOH=0.000;IOD=-0.000;AOI=-24.557;AOZ=-15.110;ABE=0.602;ABZ=4.584;BCS=-410.281;FIC=0.368;LQR=0.035;MQ0=0.000;MQ10=0.181;MQ20=0.455;MQ30=0.881;MENDEL=0;SVM=-1.7945503;AN=414;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),UPSTREAM(LOW||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	92638	rs145702574	A	T	0.0	SVM	NS=28;AF=0.107;AC=6;s50=0.06;LBS=286,173,31,10,12,6,415,645;OBS=4031,5536,5,6,4,1,4912,7451;STZ=0.024;STZ=3.591;CBZ=0.030;CBZ=4.396;QBZ=-0.126;QBZ=-18.694;MBR=-0.388;MSR=0.032;MBZ=-57.495;IOZ=0.120;IOH=-10.836;IOD=0.001;IOD=-0.000;AOZ=-1328.483;AOZ=-1317.646;ABZ=0.549;ABZ=9.921;BCS=-56200.868;FIC=-1.584;LQR=0.065;MQ10=0.000;MQ10=0.186;MQ20=0.472;MQ30=0.788;MENDEL=0;SVM=-1.7483766;AN=56;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),UPSTREAM(LOW||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	92654	rs141678164	T	C	0.0	SVM	NS=124;AF=0.023;AC=6;s50=0.27;LBS=36,28,164,95,23,33,681,903;OBS=3,2,1549,1282,1,2,8771,9226;STR=-0.041;STZ=-5.914;CBR=-0.019;CBZ=-2.730;QBR=-0.010;QBZ=-1.378;MBR=-0.347;MSR=0.081;MBZ=-50.033;IOR=0.063;IOZ=-10.890;IOH=0.000;IOD=0.000;AOI=-311.606;AOZ=-300.716;ABE=0.668;ABZ=26.704;BCS=-9230.127;FIC=-5.661;LQR=0.081;MQ0=0.000;MQ10=0.199;MQ20=0.466;MQ30=0.751;MENDEL=1;SVM=-1.3552187;AN=248;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),UPSTREAM(LOW||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	92858	rs147061536	G	T	0.0	SVM	NS=188;AF=0.008;AC=3;s50=0.41;LBS=0,19,0,13,65,227,72,81;OBS=0,3,4,0,7997,3846,1268,634;STR=0.006;STZ=0.748;CBR=0.007;CBZ=0.807;QBR=-0.119;QBZ=-13.947;MBR=0.330;MSR=-0.024;MBZ=38.696;IOR=0.092;IOZ=-8.295;IOH=0.000;IOD=-0.001;AOI=-272.676;AOZ=-264.381;ABE=0.503;ABZ=0.602;BCS=-7265.790;FIC=-9.049;LQR=0.031;MQ0=0.000;MQ10=0.154;MQ20=0.413;MQ30=0.848;MENDEL=0;SVM=-0.796531;AN=376;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),UPSTREAM(LOW||||RP11-34P13.8|lincRNA|NON_CODING|ENST00000495576|)
1	96592	.	T	C	0.0	SVM	NS=137;AF=0.041;AC=12;s50=0.30;LBS=2,2,5,23,0,8,310,320;OBS=1,0,1208,516,2,2,5418,3243;STZ=-0.058;STZ=-5.921;CBZ=0.084;CBZ=8.549;QBZ=0.147;QBZ=14.935;MBR=-0.388;MSR=-0.019;MBZ=-39.532;IOZ=0.069;IOH=-8.224;IOD=0.001;IOD=0.001;AOZ=-250.775;AOZ=-242.551;ABZ=0.598;ABZ=13.912;BCS=-4456.158;FIC=-4.326;LQR=0.060;MQ10=0.000;MQ10=0.157;MQ20=0.494;MQ30=0.908;MENDEL=0;SVM=-1.8641668;AN=274;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	97485	.	A	G	0.0	SVM	NS=203;AF=0.002;AC=1;s50=0.44;LBS=175,324,4,2,19,19,1,5;OBS=5218,6590,2,0,3431,3600,1,3;STR=-0.045;STZ=-6.138;CBR=-0.035;CBZ=-4.870;QBR=0.223;QBZ=30.542;MBR=-0.109;MSR=0.021;MBZ=-14.897;IOR=0.061;IOZ=-9.586;IOH=0.000;IOD=-0.000;AOI=-858.723;AOZ=-849.137;ABE=0.507;ABZ=2.329;BCS=-29861.825;FIC=-109.263;LQR=0.028;MQ0=0.000;MQ10=0.850;MQ20=0.898;MQ30=0.972;MENDEL=0;SVM=-2.3017024;AN=406;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	97488	.	G	A	0.0	SVM	NS=201;AF=0.002;AC=1;s50=0.44;LBS=298,96,4,2,42,38,2,2;OBS=3066,3683,0,0,5856,7740,4,0;STR=-0.022;STZ=-3.191;CBR=-0.042;CBZ=-5.956;QBR=-0.202;QBZ=-28.768;MBR=0.032;MSR=0.044;MBZ=4.545;IOR=0.040;IOZ=-9.867;IOH=0.000;IOD=0.000;AOI=-801.915;AOZ=-792.048;ABE=0.572;ABZ=23.629;BCS=-24818.572;FIC=-120.239;LQR=0.023;MQ0=0.000;MQ10=0.852;MQ20=0.890;MQ30=0.965;MENDEL=0;SVM=-1.9783111;AN=402;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	99044	rs138517061	T	C	0.0	SVM	NS=14;AF=0.037;AC=1;s50=0.03;LBS=1,0,29,59,1,1,15,22;OBS=0,1,154,421,0,0,1564,2654;STR=0.070;STZ=4.815;CBR=0.046;CBZ=3.171;QBR=-0.222;QBZ=-15.353;MBR=0.203;MSR=0.090;MBZ=14.048;IOR=0.052;IOZ=-4.283;IOH=0.002;IOD=0.002;AOI=-159.259;AOZ=-154.976;ABE=0.580;ABZ=6.083;BCS=-1878.181;FIC=-1.648;LQR=0.025;MQ0=0.000;MQ10=0.477;MQ20=0.675;MQ30=0.950;MENDEL=0;SVM=-2.9684937;AN=28;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	99082	rs141685291	T	C	0.0	SVM	NS=3;AF=1.000;AC=3;s50=0.00;LBS=1,1,12,15,0,1,28,16;OBS=0,4,187,475,2,3,482,1054;STR=0.031;STZ=1.455;CBR=0.002;CBZ=0.106;QBR=0.027;QBZ=1.257;MBR=0.334;MSR=0.030;MBZ=15.649;IOR=0.424;IOZ=-3.489;IOH=1.000;IOD=0.996;AOI=-220.195;AOZ=-216.706;ABE=0.500;ABZ=0.000;BCS=4575.683;FIC=-nan;LQR=0.031;MQ0=0.000;MQ10=0.556;MQ20=0.722;MQ30=0.960;MENDEL=0;SVM=-2.3995041;AN=6;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	99629	.	G	A	0.0	SVM	NS=125;AF=0.019;AC=5;s50=0.27;LBS=33,137,4,6,205,415,1,7;OBS=892,628,0,0,4638,4078,0,1;STZ=-0.039;STZ=-3.947;CBZ=0.031;CBZ=3.178;QBZ=-0.012;QBZ=-1.241;MBR=-0.061;MSR=-0.041;MBZ=-6.168;IOZ=0.017;IOH=-7.546;IOD=0.000;IOD=0.000;AOZ=-241.392;AOZ=-233.846;ABZ=0.561;ABZ=6.571;BCS=-2847.010;FIC=-10.706;LQR=0.072;MQ10=0.000;MQ10=0.121;MQ20=0.657;MQ30=0.918;MENDEL=0;SVM=-2.6782881;AN=250;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	101158	rs144321170	T	C	0.0	SVM	NS=1;AF=1.000;AC=1;s50=0.00;LBS=4,58,51,220,5,67,48,230;OBS=1,17,2970,3051,7,29,610,512;STR=0.037;STZ=3.098;CBR=-0.006;CBZ=-0.503;QBR=0.219;QBZ=18.541;MBR=-0.009;MSR=0.015;MBZ=-0.785;IOR=0.612;IOZ=-5.732;IOH=1.000;IOD=0.992;AOI=-1162.148;AOZ=-1156.417;ABE=0.500;ABZ=0.000;BCS=-27858.029;FIC=-nan;LQR=0.071;MQ0=0.000;MQ10=0.132;MQ20=0.468;MQ30=0.893;MENDEL=0;SVM=-3.1861317;AN=2;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	102138	rs139862774	C	T	0.0	SVM	NS=59;AF=0.131;AC=16;s50=0.13;LBS=7,24,330,493,5,20,263,160;OBS=1,3,5009,3154,3,5,1753,858;STR=-0.051;STZ=-5.310;CBR=0.013;CBZ=1.307;QBR=-0.135;QBZ=-13.987;MBR=-0.191;MSR=-0.073;MBZ=-19.843;IOR=0.175;IOZ=-7.516;IOH=0.002;IOD=0.001;AOI=-407.331;AOZ=-399.815;ABE=0.490;ABZ=-1.385;BCS=-7905.079;FIC=-1.363;LQR=0.104;MQ0=0.000;MQ10=0.165;MQ20=0.629;MQ30=0.887;MENDEL=0;SVM=-2.2801469;AN=118;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	102334	.	C	T	0.0	SVM	NS=113;AF=0.008;AC=2;s50=0.24;LBS=7,6,336,231,7,3,69,26;OBS=0,1,6301,6115,0,2,1154,1423;STR=0.045;STZ=5.513;CBR=0.023;CBZ=2.837;QBR=0.019;QBZ=2.356;MBR=-0.299;MSR=0.015;MBZ=-36.653;IOR=0.039;IOZ=-8.627;IOH=0.001;IOD=0.001;AOI=-354.533;AOZ=-345.906;ABE=0.650;ABZ=25.664;BCS=-6787.066;FIC=-25.557;LQR=0.042;MQ0=0.000;MQ10=0.114;MQ20=0.391;MQ30=0.901;MENDEL=0;SVM=-1.7816764;AN=226;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	104972	.	G	C	0.0	SVM	NS=11;AF=0.143;AC=3;s50=0.02;LBS=0,4,28,68,72,66,3,6;OBS=2,6,1780,1337,3163,2036,3,3;STR=0.037;STZ=3.356;CBR=-0.008;CBZ=-0.755;QBR=-0.059;QBZ=-5.383;MBR=-0.549;MSR=-0.068;MBZ=-50.080;IOR=0.255;IOZ=-6.379;IOH=0.002;IOD=-0.000;AOI=-566.215;AOZ=-559.836;ABE=0.589;ABZ=15.071;BCS=-12248.138;FIC=-1.352;LQR=0.027;MQ0=0.000;MQ10=0.243;MQ20=0.437;MQ30=0.907;MENDEL=0;SVM=-3.0995617;AN=22;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	105999	.	T	A	0.0	SVM	NS=4;AF=0.143;AC=1;s50=0.01;LBS=38,154,13,8,6,8,140,118;OBS=2170,1369,3,0,2,2,1721,964;STR=0.028;STZ=2.242;CBR=0.002;CBZ=0.188;QBR=0.176;QBZ=13.895;MBR=-0.438;MSR=-0.025;MBZ=-34.547;IOR=0.183;IOZ=-5.591;IOH=0.001;IOD=-0.000;AOI=-737.537;AOZ=-731.946;ABE=0.510;ABZ=1.645;BCS=-16165.349;FIC=-1.486;LQR=0.067;MQ0=0.000;MQ10=0.273;MQ20=0.489;MQ30=0.933;MENDEL=0;SVM=-3.6613709;AN=8;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000471248|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	106465	.	A	G	0.0	SVM	NS=3;AF=0.333;AC=2;s50=0.01;LBS=62,217,3,16,99,172,1,20;OBS=3879,2663,2,0,5102,3628,0,4;STR=0.009;STZ=1.058;CBR=-0.042;CBZ=-5.204;QBR=0.013;QBZ=1.651;MBR=-0.191;MSR=-0.051;MBZ=-23.647;IOR=0.073;IOZ=-8.754;IOH=0.000;IOD=-0.000;AOI=-1164.212;AOZ=-1155.458;ABE=0.580;ABZ=21.433;BCS=-40576.503;FIC=-0.261;LQR=0.035;MQ0=0.000;MQ10=0.121;MQ20=0.453;MQ30=0.916;MENDEL=0;SVM=-3.8006538;AN=6;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000471248|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	106534	.	A	G	0.0	SVM	NS=2;AF=1.000;AC=3;s50=0.00;LBS=45,37,17,7,313,285,11,10;OBS=1221,892,98,63,23315,14000,5,1;STR=-0.022;STZ=-4.336;CBR=-0.001;CBZ=-0.229;QBR=0.085;QBZ=16.809;MBR=0.050;MSR=0.013;MBZ=9.978;IOR=0.504;IOZ=-12.772;IOH=1.000;IOD=0.996;AOI=-3358.260;AOZ=-3345.488;ABE=0.500;ABZ=0.000;BCS=-196947.034;FIC=-nan;LQR=0.017;MQ0=0.000;MQ10=0.647;MQ20=0.714;MQ30=0.912;MENDEL=0;SVM=-1.6980645;AN=4;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000471248|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	106544	.	C	G	0.0	SVM	NS=2;AF=1.000;AC=4;s50=0.00;LBS=18,20,17,41,699,414,2,24;OBS=5,6,50,22,18802,10285,2,3;STR=0.005;STZ=0.810;CBR=0.011;CBZ=1.811;QBR=0.012;QBZ=2.061;MBR=-0.055;MSR=-0.044;MBZ=-9.369;IOR=0.101;IOZ=-11.933;IOH=1.000;IOD=0.999;AOI=-2832.909;AOZ=-2820.976;ABE=0.500;ABZ=0.000;BCS=-158992.156;FIC=-nan;LQR=0.039;MQ0=0.000;MQ10=0.627;MQ20=0.713;MQ30=0.919;MENDEL=0;SVM=-2.159357;AN=4;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000471248|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	106619	.	G	C	0.0	SVM	NS=56;AF=0.053;AC=6;s50=0.12;LBS=12,6,146,188,249,285,10,34;OBS=1,3,1426,2665,4210,6473,3,9;STR=0.042;STZ=5.093;CBR=0.050;CBZ=6.090;QBR=-0.134;QBZ=-16.324;MBR=-0.512;MSR=-0.013;MBZ=-62.248;IOR=0.179;IOZ=-8.533;IOH=0.001;IOD=-0.000;AOI=-558.274;AOZ=-549.741;ABE=0.662;ABZ=37.419;BCS=-13331.781;FIC=-5.109;LQR=0.055;MQ0=0.000;MQ10=0.195;MQ20=0.384;MQ30=0.929;MENDEL=0;SVM=-1.8513759;AN=112;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000471248|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	106814	.	C	G	0.0	SVM	NS=297;AF=0.008;AC=5;s50=0.64;LBS=11,6,242,222,45,48,6,3;OBS=2,1,8044,5181,887,405,1,2;STR=-0.046;STZ=-5.512;CBR=-0.039;CBZ=-4.715;QBR=-0.111;QBZ=-13.408;MBR=-0.347;MSR=-0.009;MBZ=-41.752;IOR=0.076;IOZ=-8.561;IOH=0.000;IOD=-0.000;AOI=-182.690;AOZ=-174.129;ABE=0.738;ABZ=28.654;BCS=-1154.795;FIC=-12.836;LQR=0.037;MQ0=0.000;MQ10=0.102;MQ20=0.266;MQ30=0.885;MENDEL=0;SVM=-0.5353775;AN=594;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000471248|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	107332	.	T	C	0.0	SVM	NS=33;AF=0.114;AC=8;s50=0.07;LBS=9,4,352,56,3,0,241,194;OBS=1,1,4216,3936,0,1,6448,5535;STR=0.021;STZ=2.920;CBR=-0.010;CBZ=-1.470;QBR=-0.020;QBZ=-2.852;MBR=-0.121;MSR=-0.024;MBZ=-17.240;IOR=0.026;IOZ=-10.602;IOH=0.000;IOD=-0.000;AOI=-903.344;AOZ=-892.742;ABE=0.631;ABZ=38.462;BCS=-32347.461;FIC=-2.414;LQR=0.040;MQ0=0.000;MQ10=0.088;MQ20=0.510;MQ30=0.955;MENDEL=0;SVM=-2.9690099;AN=66;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000471248|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	109640	rs141675425	T	A	0.0	SVM	NS=21;AF=0.024;AC=1;s50=0.04;LBS=81,135,6,7,5,6,315,299;OBS=1689,608,1,0,4,1,5547,2111;STR=-0.010;STZ=-1.028;CBR=-0.015;CBZ=-1.452;QBR=-0.027;QBZ=-2.654;MBR=-0.432;MSR=-0.038;MBZ=-43.148;IOR=0.091;IOZ=-7.765;IOH=0.000;IOD=-0.000;AOI=-349.682;AOZ=-341.917;ABE=0.539;ABZ=4.707;BCS=-6373.011;FIC=-10.782;LQR=0.077;MQ0=0.000;MQ10=0.204;MQ20=0.447;MQ30=0.937;MENDEL=0;SVM=-3.2349022;AN=42;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000471248|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	118617	rs145370278	T	C	0.0	SVM	NS=13;AF=0.727;AC=16;s50=0.02;LBS=4,3,69,60,0,4,328,87;OBS=4,1,6169,2835,4,1,2743,1309;STR=-0.008;STZ=-0.933;CBR=0.069;CBZ=7.913;QBR=0.251;QBZ=28.737;MBR=0.113;MSR=-0.112;MBZ=12.905;IOR=0.133;IOZ=-8.093;IOH=0.001;IOD=-0.000;AOI=-1297.744;AOZ=-1289.650;ABE=0.476;ABZ=-5.647;BCS=-44655.116;FIC=-0.335;LQR=0.040;MQ0=0.000;MQ10=0.105;MQ20=0.358;MQ30=0.484;MENDEL=0;SVM=-1.6053558;AN=26;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000466430|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000471248|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	128798	.	C	T	0.0	SVM	NS=7;AF=0.857;AC=12;s50=0.01;LBS=0,0,34,44,1,1,45,28;OBS=0,1,110,204,1,2,631,1373;STR=0.026;STZ=1.267;CBR=-0.038;CBZ=-1.847;QBR=0.072;QBZ=3.472;MBR=-0.206;MSR=0.031;MBZ=-9.920;IOR=0.228;IOZ=-3.680;IOH=0.006;IOD=0.004;AOI=-631.488;AOZ=-627.808;ABE=0.362;ABZ=-7.644;BCS=-10266.286;FIC=0.399;LQR=0.061;MQ0=0.000;MQ10=0.246;MQ20=0.619;MQ30=0.816;MENDEL=0;SVM=-3.3727663;AN=14;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000453576|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000471248|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|),UPSTREAM(LOW||||RP11-34P13.10|processed_pseudogene|NON_CODING|ENST00000442987|)
1	129963	.	T	A	0.0	SVM	NS=12;AF=1.000;AC=24;s50=0.02;LBS=184,147,12,7,9,10,94,198;OBS=7091,2998,8,2,19,1,540,233;STR=-0.003;STZ=-0.264;CBR=-0.056;CBZ=-5.836;QBR=0.177;QBZ=18.427;MBR=-0.086;MSR=0.027;MBZ=-8.912;IOR=0.339;IOZ=-7.593;IOH=1.000;IOD=0.997;AOI=-1515.146;AOZ=-1507.553;ABE=0.500;ABZ=0.000;BCS=-51137.201;FIC=-nan;LQR=0.054;MQ0=0.000;MQ10=0.444;MQ20=0.704;MQ30=0.867;MENDEL=0;SVM=-2.7107227;AN=24;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.11|processed_pseudogene|NON_CODING|ENST00000423372|),TRANSCRIPT(MODIFIER||||RP11-34P13.7|antisense|NON_CODING|ENST00000453576|),UPSTREAM(LOW||||RP11-34P13.10|processed_pseudogene|NON_CODING|ENST00000442987|),UPSTREAM(LOW||||RP11-34P13.7|antisense|NON_CODING|ENST00000471248|),UPSTREAM(LOW||||RP11-34P13.7|antisense|NON_CODING|ENST00000477740|)
1	152892	.	T	C	0.0	SVM	NS=7;AF=0.455;AC=5;s50=0.01;LBS=3,3,49,15,6,0,69,38;OBS=1,1,635,519,1,1,284,291;STR=-0.053;STZ=-2.210;CBR=0.071;CBZ=2.968;QBR=0.124;QBZ=5.142;MBR=-0.410;MSR=-0.022;MBZ=-17.041;IOR=0.289;IOZ=-3.126;IOH=0.001;IOD=-0.001;AOI=-425.131;AOZ=-422.006;ABE=0.212;ABZ=-17.877;BCS=-5619.752;FIC=0.412;LQR=0.090;MQ0=0.000;MQ10=0.353;MQ20=0.549;MQ30=0.780;MENDEL=0;SVM=-2.7418535;AN=14;EFF=DOWNSTREAM(MODIFIER||||U6|snRNA|NON_CODING|ENST00000410691|),UPSTREAM(LOW||||RP11-34P13.12|antisense|NON_CODING|ENST00000484859|)
1	153670	.	A	G	0.0	SVM	NS=12;AF=1.000;AC=24;s50=0.02;LBS=67,9,4,0,76,11,3,4;OBS=73,48,0,0,1124,729,3,1;STR=-0.002;STZ=-0.089;CBR=-0.030;CBZ=-1.331;QBR=0.208;QBZ=9.252;MBR=-0.011;MSR=-0.006;MBZ=-0.472;IOR=0.252;IOZ=-3.431;IOH=1.000;IOD=0.998;AOI=-619.438;AOZ=-616.007;ABE=0.500;ABZ=0.000;BCS=-9412.910;FIC=-nan;LQR=0.076;MQ0=0.000;MQ10=0.366;MQ20=0.696;MQ30=0.898;MENDEL=0;SVM=-3.76713;AN=24;EFF=DOWNSTREAM(MODIFIER||||U6|snRNA|NON_CODING|ENST00000410691|),UPSTREAM(LOW||||RP11-34P13.12|antisense|NON_CODING|ENST00000484859|)
1	157259	rs144736468	G	A	0.0	SVM	NS=302;AF=0.002;AC=1;s50=0.64;LBS=53,80,4,2,85,130,0,6;OBS=1254,727,1,0,2763,1339,5,1;STZ=0.040;STZ=3.132;CBZ=0.043;CBZ=3.391;QBZ=-0.030;QBZ=-2.347;MBR=0.042;MSR=-0.121;MBZ=3.247;IOZ=0.159;IOH=-6.076;IOD=0.002;IOD=0.000;AOZ=-381.713;AOZ=-375.637;ABZ=0.468;ABZ=-5.065;BCS=-7770.142;FIC=-61.021;LQR=0.054;MQ10=0.000;MQ10=0.154;MQ20=0.376;MQ30=0.658;MENDEL=0;SVM=-0.4738113;AN=604;EFF=DOWNSTREAM(MODIFIER||||U6|snRNA|NON_CODING|ENST00000410691|),UPSTREAM(LOW||||RP11-34P13.9|lincRNA|NON_CODING|ENST00000496488|)
1	158051	.	G	A	0.0	SVM	NS=313;AF=0.002;AC=1;s50=0.68;LBS=94,23,22,1,405,60,9,2;OBS=280,318,4,0,3964,4741,5,0;STR=-0.006;STZ=-0.613;CBR=0.008;CBZ=0.773;QBR=-0.125;QBZ=-12.062;MBR=-0.018;MSR=0.029;MBZ=-1.713;IOR=0.159;IOZ=-6.894;IOH=0.001;IOD=0.001;AOI=-106.379;AOZ=-99.485;ABE=0.809;ABZ=33.246;BCS=-360.766;FIC=-17.692;LQR=0.059;MQ0=0.000;MQ10=0.091;MQ20=0.522;MQ30=0.879;MENDEL=0;SVM=-1.0685974;AN=626;EFF=UPSTREAM(LOW||||RP11-34P13.9|lincRNA|NON_CODING|ENST00000496488|),UPSTREAM(LOW||||U6|snRNA|NON_CODING|ENST00000410691|)
1	161483	.	C	G	0.0	SVM	NS=4;AF=0.400;AC=4;s50=0.01;LBS=9,4,41,50,122,111,4,5;OBS=4,7,465,245,4704,2437,0,0;STR=-0.002;STZ=-0.214;CBR=0.014;CBZ=1.230;QBR=0.012;QBZ=1.090;MBR=-0.206;MSR=0.024;MBZ=-18.258;IOR=0.219;IOZ=-6.244;IOH=0.008;IOD=0.006;AOI=-1319.362;AOZ=-1313.118;ABE=0.300;ABZ=-11.914;BCS=-37612.772;FIC=0.754;LQR=0.040;MQ0=0.000;MQ10=0.455;MQ20=0.802;MQ30=0.942;MENDEL=0;SVM=-3.3574007;AN=8;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.13|lincRNA|NON_CODING|ENST00000466557|),DOWNSTREAM(MODIFIER||||RP11-34P13.13|lincRNA|NON_CODING|ENST00000491962|),TRANSCRIPT(MODIFIER||||RP11-34P13.9|lincRNA|NON_CODING|ENST00000496488|),UPSTREAM(LOW||||U6|snRNA|NON_CODING|ENST00000410691|)
1	163809	.	A	C	0.0	SVM	NS=4;AF=0.750;AC=6;s50=0.01;LBS=107,66,111,83,1,3,5,8;OBS=446,290,2852,1710,0,0,0,2;STR=-0.014;STZ=-1.003;CBR=-0.011;CBZ=-0.837;QBR=0.051;QBZ=3.742;MBR=-0.207;MSR=0.007;MBZ=-15.044;IOR=0.065;IOZ=-5.369;IOH=0.000;IOD=0.000;AOI=-991.125;AOZ=-985.756;ABE=0.415;ABZ=-5.973;BCS=-23572.820;FIC=0.736;LQR=0.065;MQ0=0.001;MQ10=0.544;MQ20=0.749;MQ30=0.885;MENDEL=0;SVM=-3.6256608;AN=8;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.13|lincRNA|NON_CODING|ENST00000466557|),DOWNSTREAM(MODIFIER||||RP11-34P13.13|lincRNA|NON_CODING|ENST00000491962|),DOWNSTREAM(MODIFIER||||RP11-34P13.9|lincRNA|NON_CODING|ENST00000496488|)
1	166051	.	G	A	0.0	SVM	NS=6;AF=1.000;AC=8;s50=0.00;LBS=45,167,1,13,22,128,4,5;OBS=4013,1888,0,0,74,56,9,0;STR=-0.035;STZ=-2.696;CBR=-0.048;CBZ=-3.736;QBR=0.162;QBZ=12.553;MBR=0.044;MSR=-0.074;MBZ=3.413;IOR=0.249;IOZ=-5.196;IOH=1.000;IOD=0.999;AOI=-1309.157;AOZ=-1303.961;ABE=0.500;ABZ=0.000;BCS=-32271.463;FIC=-nan;LQR=0.057;MQ0=0.000;MQ10=0.149;MQ20=0.615;MQ30=0.928;MENDEL=0;SVM=-3.1106232;AN=12;EFF=DOWNSTREAM(MODIFIER||||RP11-34P13.9|lincRNA|NON_CODING|ENST00000496488|),TRANSCRIPT(MODIFIER||||RP11-34P13.13|lincRNA|NON_CODING|ENST00000466557|),TRANSCRIPT(MODIFIER||||RP11-34P13.13|lincRNA|NON_CODING|ENST00000491962|)
1	168964	.	A	G	0.0	SVM	NS=5;AF=0.833;AC=8;s50=0.01;LBS=29,89,0,1,23,43,2,3;OBS=218,249,1,0,1148,453,2,1;STR=-0.221;STZ=-10.043;CBR=0.032;CBZ=1.450;QBR=0.203;QBZ=9.252;MBR=-0.153;MSR=0.058;MBZ=-6.952;IOR=0.244;IOZ=-3.497;IOH=0.004;IOD=0.002;AOI=-524.862;AOZ=-521.365;ABE=0.376;ABZ=-8.067;BCS=-8049.294;FIC=0.111;LQR=0.082;MQ0=0.000;MQ10=0.299;MQ20=0.704;MQ30=0.915;MENDEL=0;SVM=-2.646673;AN=10;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.13|lincRNA|NON_CODING|ENST00000466557|),UPSTREAM(LOW||||RP11-34P13.13|lincRNA|NON_CODING|ENST00000491962|)
1	170499	.	G	C	0.0	SVM	NS=6;AF=1.000;AC=12;s50=0.01;LBS=2,1,27,43,37,128,2,1;OBS=1,0,988,565,440,300,1,0;STR=-0.040;STZ=-1.923;CBR=0.156;CBZ=7.476;QBR=0.041;QBZ=1.983;MBR=-0.197;MSR=-0.049;MBZ=-9.426;IOR=0.135;IOZ=-3.581;IOH=1.000;IOD=0.999;AOI=-502.630;AOZ=-499.049;ABE=0.500;ABZ=0.000;BCS=-4424.074;FIC=-nan;LQR=0.093;MQ0=0.000;MQ10=0.280;MQ20=0.667;MQ30=0.922;MENDEL=0;SVM=-2.8131507;AN=12;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.13|lincRNA|NON_CODING|ENST00000466557|),UPSTREAM(LOW||||RP11-34P13.13|lincRNA|NON_CODING|ENST00000491962|)
1	170634	.	C	G	0.0	SVM	NS=9;AF=0.889;AC=16;s50=0.02;LBS=4,16,141,217,54,166,5,18;OBS=1,2,192,408,607,1328,0,3;STR=0.006;STZ=0.300;CBR=0.102;CBZ=5.149;QBR=0.119;QBZ=5.976;MBR=-0.085;MSR=-0.008;MBZ=-4.276;IOR=0.254;IOZ=-4.200;IOH=0.001;IOD=-0.001;AOI=-535.138;AOZ=-530.938;ABE=0.449;ABZ=-2.969;BCS=-9486.746;FIC=-0.008;LQR=0.186;MQ0=0.000;MQ10=0.316;MQ20=0.684;MQ30=0.899;MENDEL=0;SVM=-3.3258066;AN=18;EFF=TRANSCRIPT(MODIFIER||||RP11-34P13.13|lincRNA|NON_CODING|ENST00000466557|),UPSTREAM(LOW||||RP11-34P13.13|lincRNA|NON_CODING|ENST00000491962|)
1	176372	.	A	C	0.0	SVM	NS=2;AF=1.000;AC=4;s50=0.00;LBS=133,49,167,91,8,3,7,4;OBS=65,96,805,866,3,0,3,11;STR=-0.044;STZ=-1.884;CBR=-0.146;CBZ=-6.248;QBR=0.329;QBZ=14.076;MBR=0.072;MSR=-0.071;MBZ=3.063;IOR=0.514;IOZ=-3.991;IOH=1.000;IOD=0.991;AOI=-479.860;AOZ=-475.869;ABE=0.500;ABZ=0.000;BCS=-8023.048;FIC=-nan;LQR=0.194;MQ0=0.000;MQ10=0.445;MQ20=0.765;MQ30=0.914;MENDEL=0;SVM=-2.6862886;AN=4;EFF=UPSTREAM(LOW||||RP11-34P13.13|lincRNA|NON_CODING|ENST00000466557|)
1	229673	rs144149215	A	C	0.0	SVM	NS=1;AF=1.000;AC=1;s50=0.00;LBS=37,44,184,141,1,4,3,2;OBS=47,47,4575,3001,0,2,4,2;STR=-0.023;STZ=-2.056;CBR=0.015;CBZ=1.280;QBR=0.040;QBZ=3.507;MBR=-0.071;MSR=0.043;MBZ=-6.185;IOR=0.164;IOZ=-6.383;IOH=1.000;IOD=0.999;AOI=-1377.268;AOZ=-1370.885;ABE=0.500;ABZ=0.000;BCS=-40482.035;FIC=-nan;LQR=0.050;MQ0=0.000;MQ10=0.283;MQ20=0.552;MQ30=0.865;MENDEL=0;SVM=-3.7296538;AN=2;EFF=TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000442116|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000448958|),UPSTREAM(LOW||||AP006222.1|retrotransposed|NON_CODING|ENST00000424429|),UPSTREAM(LOW||||AP006222.1|retrotransposed|NON_CODING|ENST00000450734|)
1	233473	rs115354837	C	G	0.0	SVM	NS=173;AF=0.096;AC=32;s50=0.37;LBS=6,3,535,117,81,37,7,2;OBS=3,2,5234,5599,623,649,2,0;STR=-0.004;STZ=-0.448;CBR=0.000;CBZ=0.038;QBR=-0.056;QBZ=-6.163;MBR=0.191;MSR=0.003;MBZ=21.029;IOR=0.094;IOZ=-8.248;IOH=0.001;IOD=-0.000;AOI=-186.417;AOZ=-178.169;ABE=0.610;ABZ=16.885;BCS=-4384.278;FIC=-0.051;LQR=0.060;MQ0=0.000;MQ10=0.239;MQ20=0.361;MQ30=0.532;MENDEL=0;SVM=-0.38555466;AN=346;EFF=DOWNSTREAM(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000442116|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000448958|),UPSTREAM(LOW||||AP006222.1|retrotransposed|NON_CODING|ENST00000424429|),UPSTREAM(LOW||||AP006222.1|retrotransposed|NON_CODING|ENST00000450734|)
1	235844	rs138426292	C	G	0.0	SVM	NS=10;AF=0.050;AC=1;s50=0.02;LBS=3,0,107,96,588,258,1,1;OBS=8,3,3998,4858,17492,17093,7,0;STR=-0.044;STZ=-9.123;CBR=0.013;CBZ=2.772;QBR=-0.017;QBZ=-3.561;MBR=0.121;MSR=0.031;MBZ=25.169;IOR=0.076;IOZ=-14.770;IOH=0.000;IOD=0.000;AOI=-2721.698;AOZ=-2706.928;ABE=0.254;ABZ=-122.515;BCS=-162437.430;FIC=-7.903;LQR=0.024;MQ0=0.000;MQ10=0.077;MQ20=0.319;MQ30=0.865;MENDEL=0;SVM=-0.76236778;AN=20;EFF=DOWNSTREAM(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000448958|),UPSTREAM(LOW||||AP006222.2|processed_transcript|NON_CODING|ENST00000442116|)
1	235929	rs115623823	G	A	0.0	SVM	NS=271;AF=0.002;AC=1;s50=0.58;LBS=165,168,12,2,767,380,15,10;OBS=780,1462,1,1,5632,8121,3,3;STR=0.044;STZ=5.515;CBR=0.003;CBZ=0.415;QBR=-0.109;QBZ=-13.738;MBR=-0.175;MSR=0.032;MBZ=-22.140;IOR=0.081;IOZ=-9.566;IOH=0.000;IOD=-0.000;AOI=-280.529;AOZ=-270.963;ABE=0.771;ABZ=53.944;BCS=-2909.393;FIC=-69.345;LQR=0.085;MQ0=0.000;MQ10=0.077;MQ20=0.317;MQ30=0.861;MENDEL=0;SVM=-0.42992963;AN=542;EFF=TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000448958|),UPSTREAM(LOW||||AP006222.2|processed_transcript|NON_CODING|ENST00000442116|)
1	236632	.	A	G	0.0	SVM	NS=232;AF=0.002;AC=1;s50=0.49;LBS=79,402,5,34,6,52,6,49;OBS=1553,1722,1,4,24,39,0,6;STR=0.025;STZ=1.450;CBR=0.034;CBZ=1.936;QBR=-0.065;QBZ=-3.743;MBR=-0.099;MSR=-0.040;MBZ=-5.695;IOR=0.327;IOZ=-4.726;IOH=0.000;IOD=-0.003;AOI=-18.605;AOZ=-13.879;ABE=0.688;ABZ=5.764;BCS=-112.460;FIC=-1.319;LQR=0.139;MQ0=0.000;MQ10=0.185;MQ20=0.398;MQ30=0.746;MENDEL=0;SVM=-0.98733198;AN=464;EFF=TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000448958|),UPSTREAM(LOW||||AP006222.2|processed_transcript|NON_CODING|ENST00000442116|)
1	236662	.	C	T	0.0	SVM	NS=7;AF=0.067;AC=1;s50=0.01;LBS=1,1,17,19,0,1,1,5;OBS=1,4,416,936,1,0,18,40;STR=-0.002;STZ=-0.093;CBR=0.008;CBZ=0.289;QBR=-0.073;QBZ=-2.723;MBR=0.037;MSR=0.108;MBZ=1.399;IOR=0.468;IOZ=-2.611;IOH=0.001;IOD=-0.004;AOI=-26.891;AOZ=-24.280;ABE=0.707;ABZ=7.396;BCS=-180.546;FIC=0.688;LQR=0.029;MQ0=0.000;MQ10=0.260;MQ20=0.494;MQ30=0.793;MENDEL=0;SVM=-3.6751898;AN=14;EFF=TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000448958|),UPSTREAM(LOW||||AP006222.2|processed_transcript|NON_CODING|ENST00000442116|)
1	236712	.	T	A	0.0	SVM	NS=1;AF=0.500;AC=1;s50=0.00;LBS=11,8,0,0,1,3,30,37;OBS=98,183,3,8,3,4,597,1317;STR=-0.027;STZ=-1.256;CBR=-0.096;CBZ=-4.494;QBR=-0.168;QBZ=-7.876;MBR=0.008;MSR=-0.036;MBZ=0.366;IOR=0.618;IOZ=-3.295;IOH=0.007;IOD=-0.001;AOI=-96.314;AOZ=-93.019;ABE=0.732;ABZ=14.052;BCS=-795.746;FIC=0.563;LQR=0.038;MQ0=0.000;MQ10=0.245;MQ20=0.502;MQ30=0.834;MENDEL=0;SVM=-3.8248263;AN=2;EFF=TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000448958|),UPSTREAM(LOW||||AP006222.2|processed_transcript|NON_CODING|ENST00000442116|)
1	236721	.	C	T	0.0	SVM	NS=52;AF=0.040;AC=4;s50=0.10;LBS=2,1,14,18,0,0,18,20;OBS=0,2,455,888,2,1,277,495;STR=-0.020;STZ=-0.934;CBR=-0.024;CBZ=-1.121;QBR=0.005;QBZ=0.228;MBR=0.175;MSR=-0.004;MBZ=8.053;IOR=0.297;IOZ=-3.439;IOH=0.002;IOD=-0.001;AOI=-261.845;AOZ=-258.406;ABE=0.425;ABZ=-6.442;BCS=-3106.870;FIC=-1.921;LQR=0.032;MQ0=0.000;MQ10=0.273;MQ20=0.526;MQ30=0.888;MENDEL=0;SVM=-2.793243;AN=104;EFF=TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000448958|),UPSTREAM(LOW||||AP006222.2|processed_transcript|NON_CODING|ENST00000442116|)
1	239339	.	A	G	0.0	SVM	NS=94;AF=0.094;AC=16;s50=0.20;LBS=357,277,4,0,59,62,6,2;OBS=5195,4802,2,0,1117,943,11,4;STR=-0.017;STZ=-1.867;CBR=-0.037;CBZ=-4.052;QBR=-0.008;QBZ=-0.851;MBR=-0.214;MSR=0.024;MBZ=-23.549;IOR=0.186;IOZ=-8.619;IOH=0.002;IOD=0.000;AOI=-283.423;AOZ=-274.804;ABE=0.680;ABZ=29.388;BCS=-4668.523;FIC=-1.800;LQR=0.059;MQ0=0.000;MQ10=0.126;MQ20=0.434;MQ30=0.873;MENDEL=0;SVM=-2.1269372;AN=188;EFF=TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|),UPSTREAM(LOW||||AP006222.2|processed_transcript|NON_CODING|ENST00000442116|),UPSTREAM(LOW||||AP006222.2|processed_transcript|NON_CODING|ENST00000448958|)
1	239720	.	T	C	0.0	SVM	NS=107;AF=0.221;AC=49;s50=0.23;LBS=2,10,82,180,5,13,279,302;OBS=2,3,2271,1762,1,0,3947,3870;STZ=-0.055;STZ=-6.008;CBZ=-0.008;CBZ=-0.842;QBZ=0.036;QBZ=3.944;MBR=-0.284;MSR=-0.003;MBZ=-30.927;IOZ=0.079;IOH=-8.399;IOD=0.000;IOD=-0.000;AOZ=-564.091;AOZ=-555.692;ABZ=0.581;ABZ=11.556;BCS=-16133.517;FIC=-0.246;LQR=0.066;MQ10=0.000;MQ10=0.135;MQ20=0.365;MQ30=0.888;MENDEL=0;SVM=-1.5171761;AN=214;EFF=TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|),UPSTREAM(LOW||||AP006222.2|processed_transcript|NON_CODING|ENST00000448958|)
1	242536	.	G	T	0.0	SVM	NS=307;AF=0.003;AC=2;s50=0.66;LBS=9,5,6,1,203,145,77,34;OBS=2,1,2,2,4538,2733,422,307;STR=0.027;STZ=2.406;CBR=0.018;CBZ=1.611;QBR=-0.116;QBZ=-10.338;MBR=-0.308;MSR=-0.020;MBZ=-27.580;IOR=0.138;IOZ=-6.617;IOH=0.001;IOD=0.000;AOI=-133.009;AOZ=-126.392;ABE=0.551;ABZ=3.494;BCS=-921.777;FIC=-23.015;LQR=0.054;MQ0=0.000;MQ10=0.101;MQ20=0.385;MQ30=0.907;MENDEL=0;SVM=-0.8235152;AN=614;EFF=TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|),UPSTREAM(LOW||||AP006222.2|processed_transcript|NON_CODING|ENST00000448958|)
1	245378	.	C	A	0.0	SVM	NS=17;AF=0.121;AC=4;s50=0.03;LBS=125,160,91,178,7,1,8,10;OBS=723,2035,1301,2700,1,1,2,5;STR=0.068;STZ=5.556;CBR=-0.065;CBZ=-5.374;QBR=-0.163;QBZ=-13.438;MBR=0.045;MSR=0.088;MBZ=3.683;IOR=0.189;IOZ=-6.211;IOH=0.003;IOD=0.002;AOI=-516.781;AOZ=-510.570;ABE=0.494;ABZ=-0.750;BCS=-10858.541;FIC=-1.802;LQR=0.076;MQ0=0.000;MQ10=0.441;MQ20=0.650;MQ30=0.926;MENDEL=0;SVM=-3.3799902;AN=34;EFF=TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|)
1	245405	.	T	C	0.0	SVM	NS=9;AF=0.583;AC=7;s50=0.01;LBS=4,1,25,15,4,2,46,28;OBS=0,7,283,597,1,3,810,1500;STR=0.027;STZ=1.538;CBR=0.003;CBZ=0.197;QBR=0.017;QBZ=0.953;MBR=0.162;MSR=-0.020;MBZ=9.148;IOR=0.397;IOZ=-4.076;IOH=0.004;IOD=0.001;AOI=-250.326;AOZ=-246.250;ABE=0.703;ABZ=16.417;BCS=-3359.186;FIC=0.126;LQR=0.035;MQ0=0.000;MQ10=0.419;MQ20=0.657;MQ30=0.878;MENDEL=0;SVM=-3.8903997;AN=18;EFF=TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|)
1	245455	rs142767143	C	G	0.0	SVM	NS=106;AF=0.023;AC=5;s50=0.23;LBS=3,4,285,171,13,24,0,1;OBS=12,20,2139,3102,592,443,1,0;STR=-0.123;STZ=-9.714;CBR=0.078;CBZ=6.146;QBR=0.005;QBZ=0.401;MBR=-0.395;MSR=0.107;MBZ=-31.296;IOR=0.466;IOZ=-6.132;IOH=0.002;IOD=-0.003;AOI=-196.528;AOZ=-190.396;ABE=0.646;ABZ=15.887;BCS=-2253.257;FIC=-6.941;LQR=0.073;MQ0=0.000;MQ10=0.200;MQ20=0.526;MQ30=0.931;MENDEL=0;SVM=-1.842224;AN=212;EFF=TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|)
1	252147	.	A	G	0.0	SVM	NS=252;AF=0.006;AC=3;s50=0.53;LBS=396,111,14,0,147,56,8,3;OBS=4680,3926,1,0,621,742,3,3;STZ=0.061;STZ=6.062;CBZ=0.065;CBZ=6.532;QBZ=-0.158;QBZ=-15.814;MBR=-0.303;MSR=-0.096;MBZ=-30.226;IOZ=0.093;IOH=-8.263;IOD=0.001;IOD=0.000;AOZ=-198.670;AOZ=-190.407;ABZ=0.670;ABZ=23.196;BCS=-1849.608;FIC=-28.862;LQR=0.066;MQ10=0.000;MQ10=0.116;MQ20=0.477;MQ30=0.924;MENDEL=0;SVM=-1.4113133;AN=504;EFF=TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|)
1	254112	.	C	A	0.0	SVM	NS=193;AF=0.010;AC=4;s50=0.41;LBS=146,116,173,182,10,5,5,7;OBS=1102,1406,6495,8396,3,0,6,0;STR=-0.002;STZ=-0.303;CBR=0.005;CBZ=0.663;QBR=-0.146;QBZ=-19.214;MBR=-0.186;MSR=0.024;MBZ=-24.482;IOR=0.101;IOZ=-8.972;IOH=0.001;IOD=0.000;AOI=-331.193;AOZ=-322.221;ABE=0.681;ABZ=27.420;BCS=-5408.409;FIC=-13.850;LQR=0.034;MQ0=0.000;MQ10=0.094;MQ20=0.406;MQ30=0.901;MENDEL=0;SVM=-1.4304025;AN=386;EFF=DOWNSTREAM(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000335577|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|)
1	254209	.	C	T	0.0	SVM	NS=239;AF=0.004;AC=2;s50=0.51;LBS=12,8,353,184,13,7,140,69;OBS=4,0,4255,5585,2,2,481,642;STR=0.002;STZ=0.259;CBR=0.034;CBZ=3.516;QBR=-0.149;QBZ=-15.549;MBR=-0.273;MSR=0.026;MBZ=-28.545;IOR=0.126;IOZ=-7.460;IOH=0.001;IOD=0.000;AOI=-180.938;AOZ=-173.478;ABE=0.645;ABZ=13.212;BCS=-1491.346;FIC=-21.470;LQR=0.064;MQ0=0.000;MQ10=0.103;MQ20=0.404;MQ30=0.930;MENDEL=0;SVM=-1.2527308;AN=478;EFF=DOWNSTREAM(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000335577|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|)
1	255426	.	T	C	0.0	SVM	NS=123;AF=0.016;AC=4;s50=0.26;LBS=12,3,171,92,37,2,657,143;OBS=7,18,4629,3353,7,12,8738,6454;STZ=-0.005;STZ=-0.696;CBZ=0.002;CBZ=0.366;QBZ=0.010;QBZ=1.550;MBR=-0.024;MSR=-0.011;MBZ=-3.666;IOZ=0.253;IOH=-11.339;IOD=0.002;IOD=-0.000;AOZ=-813.088;AOZ=-801.749;ABZ=0.616;ABZ=41.820;BCS=-29612.203;FIC=-20.537;LQR=0.044;MQ10=0.000;MQ10=0.147;MQ20=0.340;MQ30=0.797;MENDEL=1;SVM=-1.4594195;AN=246;EFF=DOWNSTREAM(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000335577|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|)
1	255633	.	A	G	0.0	SVM	NS=27;AF=0.333;AC=18;s50=0.06;LBS=436,197,23,5,237,100,22,10;OBS=4569,2123,3,1,5333,3306,2,3;STR=0.068;STZ=8.401;CBR=-0.021;CBZ=-2.603;QBR=0.034;QBZ=4.189;MBR=-0.202;MSR=-0.068;MBZ=-24.964;IOR=0.096;IOZ=-9.235;IOH=0.001;IOD=0.000;AOI=-1090.264;AOZ=-1081.029;ABE=0.531;ABZ=7.734;BCS=-39210.337;FIC=-0.438;LQR=0.060;MQ0=0.000;MQ10=0.117;MQ20=0.470;MQ30=0.909;MENDEL=0;SVM=-2.3060166;AN=54;EFF=DOWNSTREAM(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000335577|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|)
1	256022	.	A	G	0.0	SVM	NS=51;AF=0.019;AC=2;s50=0.11;LBS=674,372,14,19,29,29,27,6;OBS=13736,5246,4,0,257,68,26,5;STR=-0.019;STZ=-2.656;CBR=0.025;CBZ=3.445;QBR=-0.016;QBZ=-2.169;MBR=0.150;MSR=-0.089;MBZ=20.830;IOR=0.228;IOZ=-10.865;IOH=0.000;IOD=-0.002;AOI=-43.441;AOZ=-32.576;ABE=0.591;ABZ=6.140;BCS=-1045.635;FIC=0.219;LQR=0.054;MQ0=0.000;MQ10=0.161;MQ20=0.536;MQ30=0.886;MENDEL=0;SVM=-2.4964314;AN=102;EFF=DOWNSTREAM(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000335577|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|)
1	256586	rs140435168	T	G	0.0	SVM	NS=364;AF=0.003;AC=2;s50=0.76;LBS=7,34,2,20,6,26,293,404;OBS=0,0,3,3,26,27,5688,4644;STR=0.009;STZ=0.881;CBR=0.003;CBZ=0.298;QBR=0.005;QBZ=0.516;MBR=0.055;MSR=-0.040;MBZ=5.615;IOR=0.077;IOZ=-8.501;IOH=0.000;IOD=-0.001;AOI=-15.319;AOZ=-6.818;ABE=0.664;ABZ=5.507;BCS=-82.733;FIC=-0.042;LQR=0.066;MQ0=0.000;MQ10=0.157;MQ20=0.392;MQ30=0.890;MENDEL=0;SVM=-0.63778496;AN=728;EFF=DOWNSTREAM(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000335577|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|)
1	256610	.	C	A	0.0	SVM	NS=183;AF=0.005;AC=2;s50=0.39;LBS=55,85,131,127,2,5,4,6;OBS=699,371,6556,3679,1,2,1,1;STZ=-0.008;STZ=-0.818;CBZ=-0.004;CBZ=-0.432;QBZ=-0.094;QBZ=-10.037;MBR=-0.249;MSR=-0.055;MBZ=-26.470;IOZ=0.091;IOH=-7.078;IOD=0.002;IOD=0.002;AOZ=-181.798;AOZ=-174.720;ABZ=0.646;ABZ=12.975;BCS=-1409.295;FIC=-18.437;LQR=0.034;MQ10=0.000;MQ10=0.088;MQ20=0.355;MQ30=0.865;MENDEL=0;SVM=-1.32879;AN=366;EFF=DOWNSTREAM(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000335577|),TRANSCRIPT(MODIFIER||||AP006222.2|processed_transcript|NON_CODING|ENST00000424587|)
1	354065	.	A	G	0.0	SVM	NS=24;AF=0.409;AC=18;s50=0.04;LBS=55,60,3,2,101,43,0,5;OBS=496,284,2,1,1229,657,3,4;STR=-0.015;STZ=-0.779;CBR=0.009;CBZ=0.466;QBR=-0.101;QBZ=-5.192;MBR=-0.202;MSR=-0.044;MBZ=-10.408;IOR=0.387;IOZ=-3.972;IOH=0.006;IOD=0.002;AOI=-548.103;AOZ=-544.131;ABE=0.243;ABZ=-17.505;BCS=-9032.169;FIC=0.221;LQR=0.089;MQ0=0.000;MQ10=0.198;MQ20=0.569;MQ30=0.849;MENDEL=0;SVM=-2.4661514;AN=48;EFF=TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|)
1	356443	.	A	G	0.0	SVM	NS=138;AF=0.978;AC=269;s50=0.29;LBS=74,331,0,2,30,131,0,5;OBS=1039,672,0,1,1013,618,2,3;STZ=-0.014;STZ=-0.821;CBZ=0.025;CBZ=1.474;QBZ=0.009;QBZ=0.537;MBR=0.042;MSR=-0.022;MBZ=2.429;IOZ=0.232;IOH=-4.457;IOD=0.000;IOD=-0.002;AOZ=-425.078;AOZ=-420.621;ABZ=0.627;ABZ=7.307;BCS=-7216.701;FIC=-3.616;LQR=0.145;MQ10=0.000;MQ10=0.171;MQ20=0.593;MQ30=0.868;MENDEL=0;SVM=-2.1593193;AN=276;EFF=TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|)
1	356537	.	G	A	0.0	SVM	NS=95;AF=0.946;AC=176;s50=0.19;LBS=70,28,12,0,343,115,4,1;OBS=622,426,0,0,949,655,6,0;STR=-0.002;STZ=-0.094;CBR=-0.004;CBZ=-0.191;QBR=-0.028;QBZ=-1.447;MBR=0.011;MSR=0.019;MBZ=0.569;IOR=0.248;IOZ=-4.241;IOH=0.004;IOD=0.002;AOI=-285.296;AOZ=-281.055;ABE=0.593;ABZ=5.775;BCS=-4129.670;FIC=-1.777;LQR=0.173;MQ0=0.000;MQ10=0.178;MQ20=0.549;MQ30=0.858;MENDEL=0;SVM=-2.7280236;AN=190;EFF=TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|)
1	358440	.	T	A	0.0	SVM	NS=36;AF=0.942;AC=65;s50=0.07;LBS=44,94,0,4,3,3,36,82;OBS=328,922,1,0,2,8,183,456;STR=0.026;STZ=1.117;CBR=-0.086;CBZ=-3.738;QBR=-0.049;QBZ=-2.142;MBR=-0.054;MSR=0.022;MBZ=-2.340;IOR=0.478;IOZ=-3.465;IOH=0.005;IOD=-0.000;AOI=-417.173;AOZ=-413.708;ABE=0.655;ABZ=8.550;BCS=-5920.095;FIC=-0.560;LQR=0.119;MQ0=0.000;MQ10=0.265;MQ20=0.620;MQ30=0.873;MENDEL=0;SVM=-3.388633;AN=72;EFF=TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|)
1	362448	.	A	G	0.0	SVM	NS=30;AF=0.100;AC=6;s50=0.06;LBS=145,47,8,2,69,47,7,3;OBS=807,1405,0,0,1249,2411,3,5;STR=0.024;STZ=1.836;CBR=0.000;CBZ=0.021;QBR=0.064;QBZ=4.903;MBR=-0.158;MSR=0.059;MBZ=-12.083;IOR=0.196;IOZ=-5.738;IOH=0.003;IOD=0.002;AOI=-744.038;AOZ=-738.300;ABE=0.353;ABZ=-13.683;BCS=-16929.869;FIC=-1.633;LQR=0.050;MQ0=0.000;MQ10=0.168;MQ20=0.633;MQ30=0.915;MENDEL=0;SVM=-3.0690046;AN=60;EFF=TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|)
1	387343	.	T	G	0.0	SVM	NS=2;AF=0.500;AC=2;s50=0.00;LBS=1,4,0,0,6,22,6,11;OBS=2,8,0,1,411,1097,327,1030;STR=-0.036;STZ=-1.927;CBR=-0.177;CBZ=-9.452;QBR=-0.196;QBZ=-10.511;MBR=0.431;MSR=0.018;MBZ=23.082;IOR=0.503;IOZ=-3.279;IOH=0.004;IOD=-0.000;AOI=-526.748;AOZ=-523.469;ABE=0.495;ABZ=-0.668;BCS=-6660.808;FIC=-0.464;LQR=0.015;MQ0=0.000;MQ10=0.586;MQ20=0.751;MQ30=0.894;MENDEL=0;SVM=-2.9932212;AN=4;EFF=TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|)
1	416202	rs150426163	G	T	0.0	SVM	NS=193;AF=0.002;AC=1;s50=0.42;LBS=3,2,1,2,155,86,3,5;OBS=2,0,1,3,4811,4532,91,90;STR=0.003;STZ=0.326;CBR=0.014;CBZ=1.333;QBR=-0.035;QBZ=-3.458;MBR=0.213;MSR=0.090;MBZ=20.773;IOR=0.122;IOZ=-6.569;IOH=0.000;IOD=-0.001;AOI=-37.950;AOZ=-31.382;ABE=0.512;ABZ=0.643;BCS=-686.473;FIC=-2.682;LQR=0.025;MQ0=0.000;MQ10=0.214;MQ20=0.554;MQ30=0.940;MENDEL=0;SVM=-1.7597721;AN=386;EFF=TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|)
1	416208	.	T	G	0.0	SVM	NS=88;AF=0.167;AC=30;s50=0.20;LBS=2,1,2,2,25,33,139,99;OBS=1,0,0,2,1618,1601,3828,3968;STR=-0.011;STZ=-1.109;CBR=-0.007;CBZ=-0.743;QBR=0.036;QBZ=3.821;MBR=-0.259;MSR=0.082;MBZ=-27.189;IOR=0.049;IOZ=-7.654;IOH=0.000;IOD=-0.000;AOI=-494.885;AOZ=-487.231;ABE=0.482;ABZ=-1.745;BCS=-13265.422;FIC=-0.261;LQR=0.026;MQ0=0.000;MQ10=0.155;MQ20=0.508;MQ30=0.941;MENDEL=1;SVM=-2.4104099;AN=176;EFF=TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|)
1	416909	.	C	T	0.0	SVM	NS=49;AF=0.010;AC=1;s50=0.11;LBS=9,7,17,44,9,10,117,101;OBS=2,3,551,750,0,3,1265,1714;STZ=-0.001;STZ=-0.066;CBZ=0.034;CBZ=2.226;QBZ=-0.152;QBZ=-9.971;MBR=0.008;MSR=0.064;MBZ=0.501;IOZ=0.236;IOH=-5.067;IOD=0.002;IOD=0.000;AOZ=-677.552;AOZ=-672.485;ABZ=0.295;ABZ=-27.707;BCS=-11993.414;FIC=-36.018;LQR=0.061;MQ10=0.000;MQ10=0.302;MQ20=0.511;MQ30=0.767;MENDEL=0;SVM=-2.8340574;AN=98;EFF=TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|)
1	419138	.	T	G	0.0	SVM	NS=12;AF=0.143;AC=4;s50=0.03;LBS=4,4,4,2,20,40,28,24;OBS=2,0,0,0,1463,1724,1427,2761;STR=-0.120;STZ=-10.309;CBR=0.051;CBZ=4.399;QBR=-0.276;QBZ=-23.723;MBR=0.588;MSR=-0.066;MBZ=50.489;IOR=0.056;IOZ=-5.806;IOH=0.000;IOD=0.000;AOI=-641.255;AOZ=-635.449;ABE=0.559;ABZ=10.707;BCS=-12363.281;FIC=-2.173;LQR=0.015;MQ0=0.000;MQ10=0.610;MQ20=0.779;MQ30=0.926;MENDEL=0;SVM=-2.174721;AN=24;EFF=TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|)
1	422450	.	A	T	0.0	SVM	NS=337;AF=0.001;AC=1;s50=0.70;LBS=138,83,7,2,11,7,59,30;OBS=2343,2140,1,0,75,68,902,847;STR=0.006;STZ=0.491;CBR=-0.024;CBZ=-1.869;QBR=0.061;QBZ=4.788;MBR=0.020;MSR=-0.005;MBZ=1.612;IOR=0.798;IOZ=-5.932;IOH=0.009;IOD=-0.014;AOI=-321.208;AOZ=-315.276;ABE=0.354;ABZ=-19.709;BCS=-8120.665;FIC=-92.281;LQR=0.047;MQ0=0.003;MQ10=0.340;MQ20=0.600;MQ30=0.938;MENDEL=0;SVM=-1.4528149;AN=674;EFF=TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|)
1	424221	.	A	G	0.0	SVM	NS=11;AF=1.000;AC=22;s50=0.02;LBS=34,43,6,4,179,327,1,8;OBS=113,103,0,3,2938,2545,6,1;STZ=-0.005;STZ=-0.370;CBZ=0.006;CBZ=0.485;QBZ=0.023;QBZ=1.773;MBR=-0.086;MSR=0.045;MBZ=-6.506;IOZ=0.195;IOH=-6.419;IOD=1.000;IOD=0.998;AOZ=-989.933;AOZ=-983.515;ABZ=0.500;ABZ=0.000;BCS=-27570.427;FIC=-nan;LQR=0.093;MQ10=0.000;MQ10=0.307;MQ20=0.671;MQ30=0.938;MENDEL=0;SVM=-3.4838272;AN=22;EFF=TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|)
1	424229	.	A	G	0.0	SVM	NS=3;AF=1.000;AC=4;s50=0.00;LBS=40,49,9,30,93,163,9,24;OBS=1099,970,0,1,2024,1711,2,6;STR=-0.010;STZ=-0.785;CBR=-0.051;CBZ=-3.851;QBR=-0.165;QBZ=-12.604;MBR=0.479;MSR=0.029;MBZ=36.484;IOR=0.235;IOZ=-5.407;IOH=1.000;IOD=0.998;AOI=-801.476;AOZ=-796.069;ABE=0.500;ABZ=0.000;BCS=-8590.514;FIC=-nan;LQR=0.056;MQ0=0.000;MQ10=0.437;MQ20=0.695;MQ30=0.946;MENDEL=0;SVM=-3.349878;AN=6;EFF=TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|)
1	432499	.	C	T	0.0	SVM	NS=1;AF=1.000;AC=2;s50=0.00;LBS=0,11,92,39,8,15,254,117;OBS=3,1,1416,1184,0,5,1870,1209;STR=-0.063;STZ=-4.768;CBR=0.022;CBZ=1.626;QBR=-0.311;QBZ=-23.436;MBR=0.564;MSR=-0.065;MBZ=42.521;IOR=0.190;IOZ=-6.188;IOH=1.000;IOD=0.998;AOI=-577.716;AOZ=-571.529;ABE=0.500;ABZ=0.000;BCS=-1199.024;FIC=-nan;LQR=0.081;MQ0=0.000;MQ10=0.606;MQ20=0.751;MQ30=0.930;MENDEL=0;SVM=-2.8919206;AN=2;EFF=TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|)
1	449293	.	A	G	0.0	SVM	NS=34;AF=0.013;AC=1;s50=0.08;LBS=31,16,2,2,2,1,4,2;OBS=708,597,0,0,28,23,0,0;STR=-0.002;STZ=-0.079;CBR=-0.010;CBZ=-0.354;QBR=-0.086;QBZ=-3.173;MBR=0.041;MSR=-0.053;MBZ=1.498;IOR=0.000;IOZ=-2.583;IOH=0.000;IOD=0.000;AOI=-25.501;AOZ=-22.918;ABE=0.517;ABZ=0.339;BCS=-123.543;FIC=-0.298;LQR=0.036;MQ0=0.000;MQ10=0.356;MQ20=0.567;MQ30=0.920;MENDEL=0;SVM=-3.7219551;AN=68;EFF=DOWNSTREAM(MODIFIER||||AL732372.1|pseudogene|NON_CODING|ENST00000540477|),DOWNSTREAM(MODIFIER||||RP4-669L17.2|lincRNA|NON_CODING|ENST00000412666|),DOWNSTREAM(MODIFIER||||RP4-669L17.2|lincRNA|NON_CODING|ENST00000450983|),DOWNSTREAM(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000455207|),TRANSCRIPT(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000440163|),UPSTREAM(LOW||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000431321|),UPSTREAM(LOW||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000453935|)
1	455718	.	T	G	0.0	SVM	NS=3;AF=0.667;AC=4;s50=0.01;LBS=0,1,1,0,36,29,9,9;OBS=1,1,0,2,409,937,1243,2799;STZ=0.003;STZ=0.245;CBZ=-0.020;CBZ=-1.433;QBZ=-0.464;QBZ=-34.034;MBR=0.521;MSR=0.072;MBZ=38.219;IOZ=0.184;IOH=-4.197;IOD=0.001;IOD=0.000;AOZ=-371.639;AOZ=-367.443;ABZ=0.694;ABZ=30.591;BCS=-4113.021;FIC=-0.523;LQR=0.015;MQ10=0.000;MQ10=0.831;MQ20=0.887;MQ30=0.941;MENDEL=0;SVM=-2.9243347;AN=6;EFF=DOWNSTREAM(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000431321|),DOWNSTREAM(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000440163|),DOWNSTREAM(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000453935|),TRANSCRIPT(MODIFIER||||RP4-669L17.2|lincRNA|NON_CODING|ENST00000412666|),TRANSCRIPT(MODIFIER||||RP4-669L17.2|lincRNA|NON_CODING|ENST00000450983|),UPSTREAM(LOW||||AL732372.1|pseudogene|NON_CODING|ENST00000540477|),UPSTREAM(LOW||||RP5-857K21.15|lincRNA|NON_CODING|ENST00000441866|)
1	457489	.	T	C	0.0	SVM	NS=155;AF=0.019;AC=6;s50=0.34;LBS=12,3,124,49,8,2,352,235;OBS=3,13,492,1381,0,4,2379,5447;STR=0.036;STZ=3.509;CBR=0.077;CBZ=7.623;QBR=-0.030;QBZ=-2.935;MBR=-0.181;MSR=0.040;MBZ=-17.782;IOR=0.227;IOZ=-8.236;IOH=0.002;IOD=-0.000;AOI=-269.000;AOZ=-260.763;ABE=0.644;ABZ=21.587;BCS=-4535.628;FIC=-11.185;LQR=0.073;MQ0=0.000;MQ10=0.120;MQ20=0.423;MQ30=0.938;MENDEL=0;SVM=-1.6143613;AN=310;EFF=DOWNSTREAM(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000431321|),DOWNSTREAM(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000440163|),DOWNSTREAM(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000453935|),TRANSCRIPT(MODIFIER||||RP4-669L17.2|lincRNA|NON_CODING|ENST00000412666|),TRANSCRIPT(MODIFIER||||RP4-669L17.2|lincRNA|NON_CODING|ENST00000450983|),UPSTREAM(LOW||||RP5-857K21.15|lincRNA|NON_CODING|ENST00000441866|)
1	458058	.	T	G	0.0	SVM	NS=3;AF=1.000;AC=6;s50=0.01;LBS=5,0,3,1,81,39,22,12;OBS=2,2,1,0,721,1663,1282,3271;STR=-0.022;STZ=-1.824;CBR=-0.140;CBZ=-11.619;QBR=-0.390;QBZ=-32.451;MBR=0.704;MSR=-0.002;MBZ=58.654;IOR=0.175;IOZ=-4.847;IOH=1.000;IOD=0.999;AOI=-571.127;AOZ=-566.279;ABE=0.500;ABZ=0.000;BCS=13950.966;FIC=-nan;LQR=0.022;MQ0=0.000;MQ10=0.723;MQ20=0.806;MQ30=0.957;MENDEL=0;SVM=-1.4767005;AN=6;EFF=DOWNSTREAM(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000431321|),DOWNSTREAM(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000440163|),DOWNSTREAM(MODIFIER||||RP4-669L17.4|processed_transcript|NON_CODING|ENST00000453935|),TRANSCRIPT(MODIFIER||||RP4-669L17.2|lincRNA|NON_CODING|ENST00000412666|),TRANSCRIPT(MODIFIER||||RP4-669L17.2|lincRNA|NON_CODING|ENST00000450983|),UPSTREAM(LOW||||RP5-857K21.15|lincRNA|NON_CODING|ENST00000441866|)
1	460723	.	T	C	0.0	SVM	NS=3;AF=0.250;AC=2;s50=0.01;LBS=7,1,58,43,0,4,23,17;OBS=2,3,1195,1437,1,0,2149,3299;STR=-0.057;STZ=-5.095;CBR=0.023;CBZ=2.094;QBR=-0.391;QBZ=-35.127;MBR=0.694;MSR=-0.040;MBZ=62.421;IOR=0.154;IOZ=-5.730;IOH=0.001;IOD=-0.000;AOI=-534.630;AOZ=-528.899;ABE=0.638;ABZ=25.313;BCS=-9299.875;FIC=-0.875;LQR=0.017;MQ0=0.000;MQ10=0.734;MQ20=0.793;MQ30=0.871;MENDEL=0;SVM=-2.5467985;AN=6;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.15|lincRNA|NON_CODING|ENST00000441866|),UPSTREAM(LOW||||RP4-669L17.2|lincRNA|NON_CODING|ENST00000412666|),UPSTREAM(LOW||||RP4-669L17.2|lincRNA|NON_CODING|ENST00000450983|)
1	522462	.	A	G	0.0	SVM	NS=128;AF=0.023;AC=4;s50=0.28;LBS=348,211,7,3,47,63,2,3;OBS=7280,5390,2,2,2364,1610,1,3;STR=-0.018;STZ=-2.258;CBR=-0.035;CBZ=-4.528;QBR=-0.069;QBZ=-8.879;MBR=-0.388;MSR=0.011;MBZ=-50.017;IOR=0.087;IOZ=-9.180;IOH=0.001;IOD=0.000;AOI=-509.618;AOZ=-500.438;ABE=0.692;ABZ=46.547;BCS=-11861.361;FIC=-11.568;LQR=0.039;MQ0=0.000;MQ10=0.134;MQ20=0.373;MQ30=0.796;MENDEL=0;SVM=-1.4881632;AN=256;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|),UPSTREAM(LOW||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),UPSTREAM(LOW||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|)
1	522482	.	G	C	0.0	SVM	NS=322;AF=0.001;AC=1;s50=0.69;LBS=5,27,26,82,137,526,5,20;OBS=2,6,206,275,7637,5350,7,1;STR=0.060;STZ=6.977;CBR=0.016;CBZ=1.861;QBR=-0.099;QBZ=-11.512;MBR=-0.145;MSR=-0.002;MBZ=-16.823;IOR=0.166;IOZ=-8.953;IOH=0.000;IOD=-0.001;AOI=-69.846;AOZ=-60.894;ABE=0.685;ABZ=9.221;BCS=-129.815;FIC=-29.564;LQR=0.054;MQ0=0.000;MQ10=0.204;MQ20=0.420;MQ30=0.792;MENDEL=0;SVM=-0.66646001;AN=644;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|),UPSTREAM(LOW||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),UPSTREAM(LOW||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|)
1	523471	.	T	C	0.0	SVM	NS=2;AF=1.000;AC=4;s50=0.00;LBS=23,2,322,218,14,0,167,96;OBS=2,8,2282,5086,0,0,46,33;STZ=0.060;STZ=5.210;CBZ=-0.031;CBZ=-2.668;QBZ=0.087;QBZ=7.544;MBR=-0.001;MSR=-0.062;MBZ=-0.081;IOZ=0.183;IOH=-6.665;IOD=1.000;IOD=0.999;AOZ=-1277.229;AOZ=-1270.564;ABZ=0.500;ABZ=0.000;BCS=-39510.306;FIC=-nan;LQR=0.097;MQ10=0.000;MQ10=0.544;MQ20=0.790;MQ30=0.959;MENDEL=0;SVM=-3.5808282;AN=4;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|)
1	524177	.	T	C	0.0	SVM	NS=11;AF=0.091;AC=2;s50=0.02;LBS=2,0,72,68,0,9,157,100;OBS=4,1,4217,1802,2,1,1480,877;STR=-0.070;STZ=-6.417;CBR=-0.035;CBZ=-3.161;QBR=0.161;QBZ=14.770;MBR=-0.531;MSR=0.040;MBZ=-48.635;IOR=0.149;IOZ=-6.778;IOH=0.003;IOD=0.002;AOI=-1033.582;AOZ=-1026.804;ABE=0.500;ABZ=0.004;BCS=-29344.631;FIC=-1.071;LQR=0.045;MQ0=0.000;MQ10=0.495;MQ20=0.639;MQ30=0.923;MENDEL=0;SVM=-2.7841169;AN=22;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),UPSTREAM(LOW||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|)
1	524695	.	T	C	0.0	SVM	NS=236;AF=0.004;AC=2;s50=0.51;LBS=1,9,60,52,4,7,185,159;OBS=0,1,788,392,1,1,3618,2705;STZ=-0.071;STZ=-6.116;CBZ=0.058;CBZ=4.984;QBZ=-0.073;QBZ=-6.357;MBR=0.199;MSR=-0.058;MBZ=17.279;IOZ=0.056;IOH=-7.120;IOD=0.000;IOD=-0.000;AOZ=-199.366;AOZ=-192.246;ABZ=0.688;ABZ=23.527;BCS=-1815.801;FIC=-36.751;LQR=0.057;MQ10=0.000;MQ10=0.772;MQ20=0.846;MQ30=0.963;MENDEL=0;SVM=-1.4553644;AN=472;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),UPSTREAM(LOW||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|)
1	524724	.	C	G	0.0	SVM	NS=187;AF=0.003;AC=1;s50=0.40;LBS=1,2,27,38,14,15,0,2;OBS=0,1,2536,2345,299,231,0,1;STR=-0.026;STZ=-1.948;CBR=-0.075;CBZ=-5.498;QBR=-0.052;QBZ=-3.846;MBR=0.434;MSR=-0.050;MBZ=31.907;IOR=0.071;IOZ=-5.122;IOH=0.000;IOD=-0.000;AOI=-124.990;AOZ=-119.868;ABE=0.682;ABZ=13.706;BCS=-563.133;FIC=-22.505;LQR=0.017;MQ0=0.000;MQ10=0.825;MQ20=0.867;MQ30=0.955;MENDEL=0;SVM=-1.5889106;AN=374;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),UPSTREAM(LOW||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|)
1	526736	rs28863004	C	G	0.0	SVM	NS=222;AF=0.004;AC=2;s50=0.48;LBS=8,1,484,87,151,141,2,3;OBS=3,0,6124,2748,2843,1044,3,0;STR=-0.041;STZ=-4.677;CBR=-0.006;CBZ=-0.721;QBR=0.038;QBZ=4.315;MBR=-0.370;MSR=-0.015;MBZ=-41.797;IOR=0.072;IOZ=-8.832;IOH=0.000;IOD=-0.000;AOI=-518.935;AOZ=-510.103;ABE=0.631;ABZ=30.658;BCS=-13255.995;FIC=-57.871;LQR=0.063;MQ0=0.000;MQ10=0.142;MQ20=0.314;MQ30=0.541;MENDEL=0;SVM=-0.1921027;AN=444;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),UPSTREAM(LOW||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|)
1	526970	rs60791385	T	C	0.0	PASS	NS=167;AF=0.032;AC=11;s50=0.35;LBS=5,5,501,162,3,3,293,595;OBS=0,3,5262,3798,0,2,7339,4502;STR=0.039;STZ=5.710;CBR=-0.003;CBZ=-0.380;QBR=-0.028;QBZ=-3.984;MBR=-0.398;MSR=-0.000;MBZ=-57.545;IOR=0.039;IOZ=-11.189;IOH=0.000;IOD=0.000;AOI=-950.078;AOZ=-938.888;ABE=0.573;ABZ=26.816;BCS=-35587.720;FIC=-8.706;LQR=0.069;MQ0=0.000;MQ10=0.145;MQ20=0.258;MQ30=0.484;MENDEL=1;SVM=0.10338304;AN=334;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),UPSTREAM(LOW||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|)
1	526982	.	T	C	0.0	PASS	NS=234;AF=0.014;AC=7;s50=0.51;LBS=18,9,50,21,94,18,1592,383;OBS=2,2,231,121,6,5,8833,6047;STR=-0.019;STZ=-2.353;CBR=0.002;CBZ=0.257;QBR=-0.051;QBZ=-6.243;MBR=-0.155;MSR=-0.034;MBZ=-19.116;IOR=0.143;IOZ=-9.487;IOH=0.004;IOD=0.003;AOI=-51.317;AOZ=-41.829;ABE=0.541;ABZ=2.174;BCS=-1054.862;FIC=-0.268;LQR=0.118;MQ0=0.000;MQ10=0.078;MQ20=0.184;MQ30=0.386;MENDEL=2;SVM=1.1899039;AN=468;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),UPSTREAM(LOW||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|)
1	527006	rs58575848	T	C	0.0	SVM	NS=186;AF=0.008;AC=3;s50=0.40;LBS=9,20,146,143,7,19,410,266;OBS=1,1,3326,1584,5,1,5124,2655;STZ=-0.019;STZ=-2.173;CBZ=0.054;CBZ=6.138;QBZ=0.015;QBZ=1.723;MBR=-0.402;MSR=0.019;MBZ=-45.232;IOZ=0.086;IOH=-9.273;IOD=0.001;IOD=0.000;AOZ=-623.160;AOZ=-613.887;ABZ=0.583;ABZ=22.016;BCS=-17702.108;FIC=-33.972;LQR=0.071;MQ10=0.000;MQ10=0.192;MQ20=0.296;MQ30=0.596;MENDEL=0;SVM=-0.52498874;AN=372;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),UPSTREAM(LOW||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|)
1	527030	.	C	T	0.0	PASS	NS=405;AF=0.001;AC=1;s50=0.87;LBS=3,1,206,75,4,1,40,8;OBS=1,0,4450,1491,1,4,181,80;STR=0.026;STZ=2.048;CBR=-0.012;CBZ=-0.954;QBR=0.016;QBZ=1.246;MBR=0.111;MSR=-0.022;MBZ=8.746;IOR=0.137;IOZ=-6.152;IOH=0.000;IOD=-0.001;AOI=-54.724;AOZ=-48.573;ABE=0.553;ABZ=3.277;BCS=-842.562;FIC=-16.838;LQR=0.050;MQ0=0.000;MQ10=0.361;MQ20=0.461;MQ30=0.802;MENDEL=0;SVM=0.59078976;AN=810;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),UPSTREAM(LOW||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|)
1	527031	rs61539349	G	A	0.0	PASS	NS=404;AF=0.001;AC=1;s50=0.87;LBS=28,8,0,3,169,100,2,4;OBS=225,80,0,0,4517,1535,10,2;STZ=0.005;STZ=0.368;CBZ=-0.013;CBZ=-1.064;QBZ=0.025;QBZ=2.015;MBR=0.090;MSR=-0.018;MBZ=7.207;IOZ=0.242;IOH=-6.106;IOD=0.000;IOD=-0.002;AOZ=-62.130;AOZ=-56.023;ABZ=0.594;ABZ=7.132;BCS=-1048.964;FIC=-15.633;LQR=0.046;MQ10=0.000;MQ10=0.358;MQ20=0.458;MQ30=0.793;MENDEL=0;SVM=0.34101688;AN=808;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),UPSTREAM(LOW||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|)
1	527038	.	C	T	0.0	PASS	NS=424;AF=0.001;AC=1;s50=0.91;LBS=8,6,317,48,7,4,10,10;OBS=8,2,3790,1245,4,0,84,38;STR=0.023;STZ=1.664;CBR=-0.033;CBZ=-2.371;QBR=0.001;QBZ=0.101;MBR=0.069;MSR=-0.033;MBZ=4.988;IOR=0.290;IOZ=-5.815;IOH=0.002;IOD=-0.001;AOI=-28.327;AOZ=-22.512;ABE=0.670;ABZ=8.789;BCS=-329.288;FIC=-8.895;LQR=0.069;MQ0=0.000;MQ10=0.347;MQ20=0.450;MQ30=0.762;MENDEL=0;SVM=0.288043;AN=848;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),UPSTREAM(LOW||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|)
1	527069	rs55684445	C	G	0.0	PASS	NS=368;AF=0.013;AC=6;s50=0.79;LBS=21,1,278,24,79,14,22,1;OBS=4,3,2146,1181,502,353,0,2;STZ=0.049;STZ=3.137;CBZ=-0.011;CBZ=-0.700;QBZ=0.021;QBZ=1.380;MBR=-0.574;MSR=-0.013;MBZ=-37.120;IOZ=0.230;IOH=-5.470;IOD=0.001;IOD=-0.002;AOZ=-183.877;AOZ=-178.408;ABZ=0.535;ABZ=2.959;BCS=-3057.447;FIC=-4.339;LQR=0.086;MQ10=0.000;MQ10=0.193;MQ20=0.287;MQ30=0.456;MENDEL=1;SVM=0.98550659;AN=736;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),UPSTREAM(LOW||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|)
1	527076	.	T	C	0.0	PASS	NS=401;AF=0.013;AC=7;s50=0.87;LBS=24,12,59,27,8,22,320,159;OBS=0,3,506,411,0,3,3212,1657;STR=0.082;STZ=6.257;CBR=0.019;CBZ=1.415;QBR=0.025;QBZ=1.884;MBR=-0.559;MSR=-0.038;MBZ=-42.558;IOR=0.132;IOZ=-6.277;IOH=0.002;IOD=0.001;AOI=-174.875;AOZ=-168.599;ABE=0.560;ABZ=5.089;BCS=-3346.334;FIC=-3.448;LQR=0.089;MQ0=0.000;MQ10=0.172;MQ20=0.267;MQ30=0.412;MENDEL=1;SVM=1.0967045;AN=802;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),UPSTREAM(LOW||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|)
1	527090	rs60833825	A	G	0.0	SVM	NS=336;AF=0.041;AC=25;s50=0.72;LBS=224,121,37,4,88,61,6,5;OBS=4211,2021,3,0,1846,989,4,3;STZ=0.024;STZ=2.305;CBZ=-0.052;CBZ=-4.911;QBZ=-0.112;QBZ=-10.702;MBR=-0.607;MSR=-0.022;MBZ=-57.811;IOZ=0.174;IOH=-6.877;IOD=0.001;IOD=0.000;AOZ=-480.655;AOZ=-473.778;ABZ=0.593;ABZ=15.515;BCS=-11154.590;FIC=-2.016;LQR=0.052;MQ10=0.000;MQ10=0.267;MQ20=0.454;MQ30=0.547;MENDEL=2;SVM=-0.36479061;AN=672;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),UPSTREAM(LOW||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|)
1	527108	rs61209377	T	C	0.0	SVM	NS=278;AF=0.056;AC=28;s50=0.59;LBS=14,17,139,31,12,17,251,116;OBS=7,1,1927,1098,7,4,3800,2158;STR=0.001;STZ=0.074;CBR=0.007;CBZ=0.674;QBR=-0.016;QBZ=-1.478;MBR=-0.529;MSR=0.027;MBZ=-50.125;IOR=0.283;IOZ=-6.922;IOH=0.002;IOD=-0.001;AOI=-506.604;AOZ=-499.682;ABE=0.605;ABZ=17.059;BCS=-12063.433;FIC=-1.879;LQR=0.056;MQ0=0.000;MQ10=0.326;MQ20=0.547;MQ30=0.701;MENDEL=1;SVM=-1.1538026;AN=556;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),TRANSCRIPT(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),UPSTREAM(LOW||||RP5-857K21.1|lincRNA|NON_CODING|ENST00000417636|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),UPSTREAM(LOW||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|)
1	530966	.	G	A	0.0	SVM	NS=111;AF=0.026;AC=2;s50=0.24;LBS=56,39,5,2,124,139,9,4;OBS=266,493,6,10,909,1998,1,2;STR=-0.033;STZ=-1.993;CBR=-0.007;CBZ=-0.414;QBR=-0.031;QBZ=-1.849;MBR=-0.116;MSR=0.023;MBZ=-7.049;IOR=0.450;IOZ=-4.804;IOH=0.001;IOD=-0.005;AOI=-183.876;AOZ=-179.071;ABE=0.591;ABZ=8.487;BCS=-1836.402;FIC=-6.754;LQR=0.089;MQ0=0.000;MQ10=0.135;MQ20=0.507;MQ30=0.881;MENDEL=0;SVM=-2.2495948;AN=222;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),TRANSCRIPT(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|)
1	531786	.	C	A	0.0	SVM	NS=304;AF=0.002;AC=1;s50=0.65;LBS=47,52,158,72,1,3,1,2;OBS=2387,2542,5400,6150,2,2,4,0;STZ=-0.015;STZ=-1.971;CBZ=-0.009;CBZ=-1.097;QBZ=0.032;QBZ=4.085;MBR=-0.217;MSR=-0.024;MBZ=-27.842;IOZ=0.090;IOH=-8.983;IOD=0.000;IOD=-0.000;AOZ=-642.279;AOZ=-633.296;ABZ=0.422;ABZ=-19.117;BCS=-21158.260;FIC=-70.891;LQR=0.020;MQ10=0.000;MQ10=0.192;MQ20=0.419;MQ30=0.758;MENDEL=0;SVM=-0.84862034;AN=608;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),TRANSCRIPT(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|)
1	532080	rs150672670	T	C	0.0	SVM	NS=182;AF=0.003;AC=1;s50=0.39;LBS=19,8,114,73,13,9,474,227;OBS=2,3,2233,3245,0,1,5348,8493;STR=-0.020;STZ=-2.727;CBR=-0.039;CBZ=-5.373;QBR=0.117;QBZ=16.234;MBR=-0.125;MSR=0.080;MBZ=-17.330;IOR=0.056;IOZ=-10.079;IOH=0.000;IOD=0.000;AOI=-639.364;AOZ=-629.286;ABE=0.626;ABZ=40.388;BCS=-19984.229;FIC=-86.201;LQR=0.044;MQ0=0.000;MQ10=0.210;MQ20=0.440;MQ30=0.658;MENDEL=0;SVM=-1.2244299;AN=364;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|)
1	532439	.	T	A	0.0	SVM	NS=289;AF=0.003;AC=2;s50=0.62;LBS=6,79,7,177,0,36,159,702;OBS=353,395,0,37,0,1,5129,5185;STR=0.013;STZ=1.338;CBR=-0.009;CBZ=-0.967;QBR=0.050;QBZ=5.248;MBR=-0.096;MSR=0.030;MBZ=-10.120;IOR=0.382;IOZ=-7.771;IOH=0.004;IOD=0.000;AOI=-114.177;AOZ=-106.406;ABE=0.646;ABZ=15.777;BCS=-2343.984;FIC=-14.378;LQR=0.079;MQ0=0.000;MQ10=0.263;MQ20=0.431;MQ30=0.592;MENDEL=0;SVM=-0.7702441;AN=578;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|)
1	532447	.	A	G	0.0	SVM	NS=287;AF=0.005;AC=3;s50=0.61;LBS=91,347,2,10,8,6,2,5;OBS=6601,6150,1,2,43,37,6,1;STR=-0.003;STZ=-0.347;CBR=-0.004;CBZ=-0.403;QBR=-0.019;QBZ=-2.204;MBR=0.005;MSR=0.057;MBZ=0.556;IOR=0.134;IOZ=-8.026;IOH=0.000;IOD=-0.001;AOI=-18.823;AOZ=-10.796;ABE=0.587;ABZ=3.339;BCS=-237.998;FIC=0.165;LQR=0.034;MQ0=0.000;MQ10=0.250;MQ20=0.407;MQ30=0.574;MENDEL=0;SVM=-0.5418694;AN=574;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|)
1	533197	.	A	G	0.0	SVM	NS=48;AF=0.071;AC=6;s50=0.10;LBS=199,87,13,1,64,66,4,5;OBS=1926,1765,0,1,782,692,0,1;STR=-0.008;STZ=-0.566;CBR=0.024;CBZ=1.717;QBR=-0.083;QBZ=-5.993;MBR=0.061;MSR=-0.079;MBZ=4.364;IOR=0.061;IOZ=-5.581;IOH=0.000;IOD=-0.000;AOI=-311.885;AOZ=-306.304;ABE=0.554;ABZ=6.852;BCS=-5119.726;FIC=-2.529;LQR=0.075;MQ0=0.002;MQ10=0.309;MQ20=0.510;MQ30=0.809;MENDEL=0;SVM=-2.3956014;AN=96;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	533206	.	A	G	0.0	SVM	NS=144;AF=0.003;AC=1;s50=0.31;LBS=172,157,11,15,14,6,12,6;OBS=1287,1808,2,2,111,182,1,0;STR=0.021;STZ=1.218;CBR=0.004;CBZ=0.217;QBR=0.008;QBZ=0.479;MBR=0.202;MSR=-0.017;MBZ=11.772;IOR=0.204;IOZ=-4.417;IOH=0.000;IOD=-0.001;AOI=-80.215;AOZ=-75.797;ABE=0.601;ABZ=6.685;BCS=-658.001;FIC=-19.969;LQR=0.093;MQ0=0.003;MQ10=0.534;MQ20=0.711;MQ30=0.916;MENDEL=0;SVM=-1.8529383;AN=288;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	534005	.	G	A	0.0	SVM	NS=1;AF=1.000;AC=1;s50=0.00;LBS=37,10,8,3,56,10,5,3;OBS=78,119,15,8,213,194,0,0;STR=0.119;STZ=2.926;CBR=-0.088;CBZ=-2.161;QBR=0.081;QBZ=1.980;MBR=0.222;MSR=0.133;MBZ=5.463;IOR=0.851;IOZ=-1.910;IOH=1.000;IOD=0.962;AOI=-103.532;AOZ=-101.622;ABE=0.500;ABZ=0.000;BCS=959.505;FIC=-nan;LQR=0.158;MQ0=0.073;MQ10=0.594;MQ20=0.786;MQ30=0.935;MENDEL=0;SVM=-1.7143624;AN=2;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	534090	rs9438469	G	A	0.0	SVM	NS=51;AF=0.018;AC=2;s50=0.11;LBS=1,8,1,0,31,83,0,0;OBS=25,36,1,1,475,664,0,0;STR=0.003;STZ=0.090;CBR=0.002;CBZ=0.053;QBR=-0.041;QBZ=-1.428;MBR=0.085;MSR=0.054;MBZ=2.945;IOR=0.202;IOZ=-2.822;IOH=0.001;IOD=-0.001;AOI=-27.496;AOZ=-24.674;ABE=0.612;ABZ=3.403;BCS=-176.529;FIC=0.195;LQR=0.093;MQ0=0.002;MQ10=0.233;MQ20=0.497;MQ30=0.888;MENDEL=0;SVM=-2.805694;AN=102;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	534095	.	T	C	0.0	SVM	NS=51;AF=0.009;AC=1;s50=0.12;LBS=2,6,3,11,4,2,40,63;OBS=0,0,64,84,0,0,937,1056;STR=0.019;STZ=0.879;CBR=-0.017;CBZ=-0.774;QBR=-0.011;QBZ=-0.491;MBR=0.056;MSR=0.053;MBZ=2.572;IOR=0.000;IOZ=-3.340;IOH=0.000;IOD=0.000;AOI=-54.797;AOZ=-51.457;ABE=0.539;ABZ=1.388;BCS=-455.448;FIC=-2.539;LQR=0.052;MQ0=0.000;MQ10=0.199;MQ20=0.457;MQ30=0.871;MENDEL=0;SVM=-2.8543907;AN=102;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	534099	.	G	A	0.0	SVM	NS=42;AF=0.055;AC=3;s50=0.09;LBS=36,13,18,2,183,59,14,2;OBS=148,191,6,0,658,1072,2,1;STZ=-0.043;STZ=-1.947;CBZ=-0.012;CBZ=-0.526;QBZ=0.092;QBZ=4.204;MBR=0.233;MSR=0.009;MBZ=10.581;IOZ=0.384;IOH=-3.788;IOD=0.009;IOD=0.005;AOZ=-105.323;AOZ=-101.535;ABZ=0.518;ABZ=0.906;BCS=-1285.971;FIC=-0.280;LQR=0.123;MQ10=0.000;MQ10=0.188;MQ20=0.450;MQ30=0.872;MENDEL=0;SVM=-2.1782073;AN=84;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	534104	.	A	G	0.0	SVM	NS=20;AF=0.324;AC=10;s50=0.03;LBS=32,57,6,1,42,37,3,4;OBS=432,650,4,0,523,644,0,2;STR=-0.049;STZ=-2.342;CBR=-0.020;CBZ=-0.950;QBR=0.060;QBZ=2.841;MBR=0.125;MSR=0.003;MBZ=5.944;IOR=0.320;IOZ=-3.564;IOH=0.000;IOD=-0.002;AOI=-378.909;AOZ=-375.345;ABE=0.562;ABZ=5.005;BCS=-5229.882;FIC=0.308;LQR=0.070;MQ0=0.000;MQ10=0.161;MQ20=0.418;MQ30=0.842;MENDEL=0;SVM=-2.9148932;AN=40;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	534113	.	C	T	0.0	SVM	NS=64;AF=0.015;AC=1;s50=0.14;LBS=6,1,52,54,0,1,9,19;OBS=0,0,994,1272,0,0,186,292;STR=0.038;STZ=1.981;CBR=0.014;CBZ=0.712;QBR=-0.004;QBZ=-0.204;MBR=-0.052;MSR=0.042;MBZ=-2.709;IOR=0.000;IOZ=-3.731;IOH=0.000;IOD=0.000;AOI=-152.430;AOZ=-148.700;ABE=0.525;ABZ=1.642;BCS=-1686.085;FIC=-3.871;LQR=0.047;MQ0=0.000;MQ10=0.157;MQ20=0.424;MQ30=0.862;MENDEL=0;SVM=-2.7548044;AN=128;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	534115	.	T	C	0.0	SVM	NS=57;AF=0.008;AC=1;s50=0.13;LBS=2,7,14,15,5,6,61,106;OBS=1,0,86,178,0,3,894,1291;STR=0.052;STZ=2.596;CBR=-0.006;CBZ=-0.314;QBR=-0.004;QBZ=-0.178;MBR=-0.037;MSR=0.023;MBZ=-1.852;IOR=0.226;IOZ=-3.695;IOH=0.001;IOD=-0.001;AOI=-85.426;AOZ=-81.731;ABE=0.506;ABZ=0.279;BCS=-854.170;FIC=-4.872;LQR=0.074;MQ0=0.000;MQ10=0.159;MQ20=0.429;MQ30=0.866;MENDEL=0;SVM=-3.0269463;AN=114;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	534318	.	G	T	0.0	SVM	NS=40;AF=0.012;AC=1;s50=0.09;LBS=18,27,2,7,167,1199,3,41;OBS=35,65,1,2,6584,7634,19,14;STR=-0.011;STZ=-1.290;CBR=-0.004;CBZ=-0.507;QBR=-0.015;QBZ=-1.830;MBR=0.030;MSR=0.072;MBZ=3.577;IOR=0.549;IOZ=-9.122;IOH=0.014;IOD=0.006;AOI=-6.817;AOZ=2.305;ABE=0.641;ABZ=3.504;BCS=-481.056;FIC=0.817;LQR=0.090;MQ0=0.006;MQ10=0.278;MQ20=0.458;MQ30=0.691;MENDEL=0;SVM=-2.3301458;AN=80;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	534321	.	G	A	0.0	SVM	NS=39;AF=0.259;AC=19;s50=0.08;LBS=127,154,5,9,181,976,67,151;OBS=663,893,0,3,6136,7977,653,767;STR=0.005;STZ=0.653;CBR=-0.005;CBZ=-0.585;QBR=-0.115;QBZ=-14.369;MBR=0.169;MSR=0.110;MBZ=21.184;IOR=0.945;IOZ=-8.155;IOH=0.070;IOD=-0.021;AOI=-104.483;AOZ=-96.328;ABE=0.557;ABZ=7.732;BCS=-12677.268;FIC=0.527;LQR=0.084;MQ0=0.007;MQ10=0.287;MQ20=0.476;MQ30=0.764;MENDEL=0;SVM=-2.219385;AN=78;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	534700	.	T	C	0.0	SVM	NS=47;AF=0.010;AC=1;s50=0.10;LBS=5,7,5,14,4,5,164,173;OBS=0,17,12,90,0,2,4119,14338;STR=0.018;STZ=2.477;CBR=-0.056;CBZ=-7.578;QBR=-0.046;QBZ=-6.322;MBR=-0.023;MSR=0.015;MBZ=-3.132;IOR=0.187;IOZ=-9.073;IOH=0.000;IOD=-0.001;AOI=-20.821;AOZ=-11.748;ABE=0.718;ABZ=8.897;BCS=-149.019;FIC=0.556;LQR=0.019;MQ0=0.000;MQ10=0.291;MQ20=0.517;MQ30=0.743;MENDEL=0;SVM=-2.5195915;AN=94;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	534703	.	C	T	0.0	SVM	NS=42;AF=0.011;AC=1;s50=0.09;LBS=8,4,230,463,16,6,22,17;OBS=2,6,4174,13531,2,0,80,292;STR=0.007;STZ=0.899;CBR=-0.025;CBZ=-3.313;QBR=-0.038;QBZ=-5.107;MBR=-0.094;MSR=0.002;MBZ=-12.588;IOR=0.099;IOZ=-9.556;IOH=0.001;IOD=0.000;AOI=-54.074;AOZ=-44.518;ABE=0.695;ABZ=14.665;BCS=-727.515;FIC=-0.739;LQR=0.039;MQ0=0.000;MQ10=0.285;MQ20=0.523;MQ30=0.735;MENDEL=0;SVM=-2.9839967;AN=84;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000423796|),DOWNSTREAM(MODIFIER||||RP5-857K21.2|lincRNA|NON_CODING|ENST00000450696|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000440196|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	535829	.	G	A	0.0	SVM	NS=24;AF=0.019;AC=1;s50=0.05;LBS=38,53,8,2,54,86,6,10;OBS=696,995,11,13,1409,1564,11,16;STZ=0.060;STZ=4.110;CBZ=0.021;CBZ=1.463;QBZ=-0.106;QBZ=-7.261;MBR=0.011;MSR=0.014;MBZ=0.762;IOZ=0.692;IOH=-4.693;IOD=0.008;IOD=-0.003;AOZ=-402.571;AOZ=-397.878;ABZ=0.451;ABZ=-6.662;BCS=-6840.510;FIC=-11.997;LQR=0.047;MQ10=0.000;MQ10=0.212;MQ20=0.542;MQ30=0.857;MENDEL=0;SVM=-2.972678;AN=48;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	535959	rs144574581	G	A	0.0	SVM	NS=41;AF=0.012;AC=1;s50=0.08;LBS=59,40,0,0,14,8,0,1;OBS=726,1093,11,4,457,789,5,8;STR=-0.033;STZ=-1.804;CBR=0.048;CBZ=2.676;QBR=-0.110;QBZ=-6.076;MBR=0.152;MSR=-0.033;MBZ=8.394;IOR=0.645;IOZ=-3.900;IOH=0.000;IOD=-0.009;AOI=-531.136;AOZ=-527.236;ABE=0.301;ABZ=-23.369;BCS=-7864.737;FIC=-14.233;LQR=0.038;MQ0=0.000;MQ10=0.162;MQ20=0.534;MQ30=0.940;MENDEL=0;SVM=-2.3944063;AN=82;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	536488	.	T	C	0.0	SVM	NS=113;AF=0.009;AC=2;s50=0.24;LBS=0,1,3,10,1,1,29,90;OBS=0,3,123,216,0,1,838,1441;STR=0.003;STZ=0.162;CBR=-0.041;CBZ=-2.105;QBR=0.082;QBZ=4.177;MBR=0.003;MSR=-0.001;MBZ=0.169;IOR=0.220;IOZ=-3.769;IOH=0.001;IOD=-0.000;AOI=-107.273;AOZ=-103.505;ABE=0.650;ABZ=11.495;BCS=-987.863;FIC=-6.015;LQR=0.048;MQ0=0.000;MQ10=0.094;MQ20=0.423;MQ30=0.715;MENDEL=0;SVM=-1.8657507;AN=226;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	536497	.	T	C	0.0	SVM	NS=138;AF=0.007;AC=2;s50=0.29;LBS=1,0,3,5,0,0,14,70;OBS=1,3,101,161,0,0,661,1210;STR=-0.022;STZ=-1.031;CBR=-0.034;CBZ=-1.559;QBR=0.095;QBZ=4.364;MBR=-0.040;MSR=-0.005;MBZ=-1.846;IOR=0.264;IOZ=-3.343;IOH=0.000;IOD=-0.002;AOI=-93.366;AOZ=-90.023;ABE=0.591;ABZ=5.716;BCS=-830.577;FIC=-6.235;LQR=0.041;MQ0=0.000;MQ10=0.159;MQ20=0.446;MQ30=0.656;MENDEL=0;SVM=-1.7832051;AN=276;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	536545	.	A	T	0.0	SVM	NS=12;AF=0.043;AC=1;s50=0.02;LBS=42,71,1,4,0,9,5,14;OBS=810,1518,5,17,5,31,147,350;STZ=0.042;STZ=2.217;CBZ=0.031;CBZ=1.649;QBZ=0.072;QBZ=3.814;MBR=0.420;MSR=0.166;MBZ=22.300;IOZ=0.766;IOH=-4.137;IOD=0.026;IOD=0.005;AOZ=-130.442;AOZ=-126.306;ABZ=0.467;ABZ=-2.654;BCS=-2133.651;FIC=-1.130;LQR=0.045;MQ10=0.000;MQ10=0.142;MQ20=0.414;MQ30=0.797;MENDEL=0;SVM=-1.94111;AN=24;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	536552	.	G	T	0.0	SVM	NS=221;AF=0.002;AC=1;s50=0.47;LBS=2,7,0,0,11,98,7,27;OBS=0,2,2,0,939,2017,158,450;STR=0.047;STZ=2.796;CBR=0.023;CBZ=1.346;QBR=0.005;QBZ=0.310;MBR=0.354;MSR=0.135;MBZ=21.162;IOR=0.198;IOZ=-4.034;IOH=0.001;IOD=0.000;AOI=-178.063;AOZ=-174.029;ABE=0.461;ABZ=-3.441;BCS=-2262.703;FIC=-40.923;LQR=0.039;MQ0=0.000;MQ10=0.135;MQ20=0.407;MQ30=0.800;MENDEL=0;SVM=-0.35414585;AN=442;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	537589	.	T	C	0.0	SVM	NS=31;AF=0.098;AC=6;s50=0.06;LBS=22,2,220,185,9,5,210,166;OBS=0,22,3399,14059,2,4,1654,7368;STR=-0.014;STZ=-2.227;CBR=-0.058;CBZ=-9.503;QBR=0.196;QBZ=31.967;MBR=0.189;MSR=-0.026;MBZ=30.748;IOR=0.160;IOZ=-12.076;IOH=0.001;IOD=0.000;AOI=-1672.513;AOZ=-1660.437;ABE=0.398;ABZ=-34.235;BCS=-79236.966;FIC=-3.896;LQR=0.029;MQ0=0.000;MQ10=0.264;MQ20=0.575;MQ30=0.893;MENDEL=0;SVM=-1.0629139;AN=62;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	537606	.	C	T	0.0	SVM	NS=61;AF=0.008;AC=1;s50=0.13;LBS=9,10,230,634,5,1,25,45;OBS=1,7,4946,14090,0,2,149,472;STR=0.008;STZ=1.091;CBR=0.025;CBZ=3.551;QBR=-0.071;QBZ=-9.897;MBR=-0.061;MSR=-0.012;MBZ=-8.559;IOR=0.089;IOZ=-10.128;IOH=0.001;IOD=0.001;AOI=-80.466;AOZ=-70.338;ABE=0.674;ABZ=15.913;BCS=-1244.146;FIC=-2.911;LQR=0.045;MQ0=0.000;MQ10=0.270;MQ20=0.584;MQ30=0.892;MENDEL=0;SVM=-2.920351;AN=122;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.3|lincRNA|NON_CODING|ENST00000357876|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	540150	.	A	T	0.0	SVM	NS=155;AF=0.006;AC=2;s50=0.33;LBS=466,197,20,6,67,12,391,117;OBS=6630,3579,9,3,19,5,4704,1856;STR=-0.071;STZ=-9.131;CBR=0.025;CBZ=3.274;QBR=-0.025;QBZ=-3.182;MBR=0.500;MSR=-0.051;MBZ=64.794;IOR=0.255;IOZ=-10.201;IOH=0.002;IOD=-0.000;AOI=-743.660;AOZ=-733.460;ABE=0.448;ABZ=-14.773;BCS=-26824.916;FIC=-39.284;LQR=0.065;MQ0=0.000;MQ10=0.122;MQ20=0.352;MQ30=0.681;MENDEL=0;SVM=-0.25656313;AN=310;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	542699	.	T	C	0.0	SVM	NS=237;AF=0.010;AC=5;s50=0.50;LBS=15,5,187,77,14,4,261,121;OBS=4,0,2781,1814,1,1,5189,3029;STZ=0.026;STZ=2.934;CBZ=0.019;CBZ=2.204;QBZ=0.016;QBZ=1.766;MBR=-0.243;MSR=-0.045;MBZ=-27.555;IOZ=0.080;IOH=-8.337;IOD=0.001;IOD=0.000;AOZ=-646.317;AOZ=-637.980;ABZ=0.532;ABZ=6.017;BCS=-18230.619;FIC=-18.556;LQR=0.048;MQ10=0.000;MQ10=0.108;MQ20=0.430;MQ30=0.916;MENDEL=0;SVM=-1.3090304;AN=474;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	544720	.	G	A	0.0	SVM	NS=274;AF=0.002;AC=1;s50=0.58;LBS=17,22,8,2,54,84,1,8;OBS=432,258,1,0,2040,1186,0,0;STR=0.005;STZ=0.317;CBR=0.038;CBZ=2.388;QBR=0.068;QBZ=4.275;MBR=0.189;MSR=0.012;MBZ=11.835;IOR=0.043;IOZ=-4.757;IOH=0.001;IOD=0.001;AOI=-173.092;AOZ=-168.335;ABE=0.555;ABZ=5.522;BCS=-2271.679;FIC=-51.676;LQR=0.043;MQ0=0.000;MQ10=0.179;MQ20=0.474;MQ30=0.883;MENDEL=0;SVM=-0.55552211;AN=548;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	544736	.	T	A	0.0	SVM	NS=163;AF=0.003;AC=1;s50=0.35;LBS=30,25,35,14,19,38,248,182;OBS=70,45,4,6,0,5,2213,1794;STZ=-0.018;STZ=-1.185;CBZ=-0.075;CBZ=-4.793;QBZ=-0.075;QBZ=-4.809;MBR=0.099;MSR=-0.004;MBZ=6.365;IOZ=0.378;IOH=-4.923;IOD=0.009;IOD=0.006;AOZ=-29.723;AOZ=-24.800;ABZ=0.716;ABZ=8.817;BCS=-126.116;FIC=-5.016;LQR=0.105;MQ10=0.000;MQ10=0.224;MQ20=0.515;MQ30=0.886;MENDEL=0;SVM=-2.1574447;AN=326;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	544747	.	A	G	0.0	SVM	NS=110;AF=0.009;AC=2;s50=0.23;LBS=134,134,6,1,33,23,2,6;OBS=1551,1478,6,1,129,247,0,0;STR=0.106;STZ=6.171;CBR=0.012;CBZ=0.723;QBR=0.033;QBZ=1.922;MBR=0.111;MSR=0.030;MBZ=6.492;IOR=0.258;IOZ=-4.489;IOH=0.000;IOD=-0.002;AOI=-100.587;AOZ=-96.099;ABE=0.706;ABZ=18.312;BCS=-722.267;FIC=-9.222;LQR=0.087;MQ0=0.000;MQ10=0.220;MQ20=0.572;MQ30=0.910;MENDEL=0;SVM=-1.7639847;AN=220;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	548491	.	C	T	0.0	SVM	NS=56;AF=0.966;AC=107;s50=0.12;LBS=2,1,41,52,0,5,53,66;OBS=1,0,177,147,0,5,1159,1065;STR=0.017;STZ=0.844;CBR=0.044;CBZ=2.239;QBR=0.038;QBZ=1.932;MBR=-0.141;MSR=-0.030;MBZ=-7.107;IOR=0.303;IOZ=-3.704;IOH=0.000;IOD=-0.002;AOI=-693.453;AOZ=-689.749;ABE=0.592;ABZ=4.369;BCS=-11700.654;FIC=-0.102;LQR=0.077;MQ0=0.000;MQ10=0.268;MQ20=0.580;MQ30=0.917;MENDEL=0;SVM=-3.3251105;AN=112;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	549337	.	T	C	0.0	SVM	NS=162;AF=0.033;AC=11;s50=0.35;LBS=0,3,43,52,3,3,100,101;OBS=0,3,587,689,1,1,3595,3831;STR=0.017;STZ=1.589;CBR=0.010;CBZ=0.975;QBR=-0.058;QBZ=-5.396;MBR=-0.136;MSR=0.045;MBZ=-12.658;IOR=0.100;IOZ=-6.724;IOH=0.001;IOD=0.000;AOI=-225.966;AOZ=-219.242;ABE=0.674;ABZ=21.021;BCS=-2611.069;FIC=-4.236;LQR=0.033;MQ0=0.000;MQ10=0.096;MQ20=0.430;MQ30=0.905;MENDEL=0;SVM=-1.8323641;AN=324;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	549546	.	A	G	0.0	SVM	NS=44;AF=0.022;AC=2;s50=0.09;LBS=273,165,13,8,158,109,15,19;OBS=1474,1602,4,3,2100,1870,0,0;STR=-0.049;STZ=-4.144;CBR=-0.006;CBZ=-0.518;QBR=0.076;QBZ=6.349;MBR=-0.215;MSR=0.035;MBZ=-18.081;IOR=0.139;IOZ=-6.608;IOH=0.001;IOD=-0.000;AOI=-701.918;AOZ=-695.310;ABE=0.415;ABZ=-13.137;BCS=-16651.839;FIC=-13.311;LQR=0.091;MQ0=0.000;MQ10=0.168;MQ20=0.567;MQ30=0.957;MENDEL=0;SVM=-2.6937445;AN=88;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	553854	.	G	C	0.0	SVM	NS=188;AF=0.005;AC=2;s50=0.40;LBS=3,5,113,48,498,615,0,2;OBS=0,2,1024,1242,4161,4743,1,0;STR=0.012;STZ=1.313;CBR=0.001;CBZ=0.094;QBR=0.105;QBZ=11.141;MBR=-0.345;MSR=0.002;MBZ=-36.467;IOR=0.040;IOZ=-8.528;IOH=0.001;IOD=0.001;AOI=-316.728;AOZ=-308.199;ABE=0.640;ABZ=24.198;BCS=-6844.172;FIC=-36.404;LQR=0.102;MQ0=0.000;MQ10=0.124;MQ20=0.382;MQ30=0.852;MENDEL=0;SVM=-1.3575599;AN=376;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	558756	rs145112510	A	G	0.0	SVM	NS=74;AF=0.007;AC=1;s50=0.16;LBS=338,402,5,7,87,216,3,12;OBS=2872,2778,3,4,2053,1480,0,2;STZ=-0.071;STZ=-6.802;CBZ=0.034;CBZ=3.293;QBZ=0.051;QBZ=4.840;MBR=-0.049;MSR=-0.072;MBZ=-4.680;IOZ=0.130;IOH=-7.771;IOD=0.002;IOD=0.001;AOZ=-533.956;AOZ=-526.185;ABZ=0.573;ABZ=16.438;BCS=-12360.606;FIC=-50.374;LQR=0.102;MQ10=0.000;MQ10=0.167;MQ20=0.455;MQ30=0.898;MENDEL=0;SVM=-1.9739916;AN=148;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	562908	.	A	G	0.0	SVM	NS=33;AF=0.969;AC=61;s50=0.06;LBS=69,73,6,2,76,92,5,6;OBS=615,257,1,1,2480,1006,0,0;STR=-0.006;STZ=-0.368;CBR=-0.006;CBZ=-0.391;QBR=0.004;QBZ=0.297;MBR=0.087;MSR=-0.036;MBZ=5.773;IOR=0.073;IOZ=-5.045;IOH=0.000;IOD=-0.000;AOI=-806.356;AOZ=-801.312;ABE=0.451;ABZ=-3.633;BCS=-17017.218;FIC=-2.831;LQR=0.066;MQ0=0.000;MQ10=0.220;MQ20=0.504;MQ30=0.775;MENDEL=0;SVM=-2.9081048;AN=66;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|)
1	563312	.	C	T	0.0	SVM	NS=254;AF=0.002;AC=1;s50=0.54;LBS=1,2,25,19,0,0,4,4;OBS=8,9,1267,1565,2,9,93,112;STR=-0.003;STZ=-0.180;CBR=-0.072;CBZ=-3.966;QBR=-0.104;QBZ=-5.757;MBR=0.156;MSR=-0.061;MBZ=8.605;IOR=0.674;IOZ=-3.604;IOH=0.000;IOD=-0.009;AOI=-62.316;AOZ=-58.712;ABE=0.318;ABZ=-8.724;BCS=-937.364;FIC=-7.444;LQR=0.017;MQ0=0.000;MQ10=0.180;MQ20=0.487;MQ30=0.780;MENDEL=0;SVM=-1.0866622;AN=508;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	563625	.	T	C	0.0	SVM	NS=10;AF=1.000;AC=20;s50=0.02;LBS=3,3,106,60,2,1,35,40;OBS=2,2,1583,1356,1,1,80,55;STZ=0.022;STZ=1.219;CBZ=-0.027;CBZ=-1.516;QBZ=0.117;QBZ=6.492;MBR=0.064;MSR=-0.071;MBZ=3.523;IOZ=0.226;IOH=-4.525;IOD=1.000;IOD=0.998;AOZ=-748.926;AOZ=-744.401;ABZ=0.500;ABZ=0.000;BCS=-14950.104;FIC=-nan;LQR=0.073;MQ10=0.000;MQ10=0.400;MQ20=0.669;MQ30=0.873;MENDEL=0;SVM=-3.3735129;AN=20;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564447	.	C	A	0.0	PASS	NS=66;AF=0.008;AC=1;s50=0.14;LBS=11,1,65,52,8,1,6,3;OBS=16,20,1531,1606,2,2,1,0;STR=0.009;STZ=0.509;CBR=0.003;CBZ=0.172;QBR=0.010;QBZ=0.584;MBR=-0.057;MSR=-0.063;MBZ=-3.237;IOR=0.246;IOZ=-3.908;IOH=0.000;IOD=-0.002;AOI=-13.784;AOZ=-9.875;ABE=0.561;ABZ=1.218;BCS=-94.366;FIC=-0.100;LQR=0.039;MQ0=0.000;MQ10=0.082;MQ20=0.200;MQ30=0.331;MENDEL=0;SVM=0.13158206;AN=132;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564463	rs80141050	A	G	0.0	SVM	NS=43;AF=0.475;AC=38;s50=0.08;LBS=130,231,7,29,143,1104,2,69;OBS=3039,3037,3,2,23900,22555,3,5;STZ=-0.009;STZ=-2.099;CBZ=-0.036;CBZ=-8.325;QBZ=0.124;QBZ=28.408;MBR=-0.776;MSR=-0.027;MBZ=-177.929;IOZ=0.056;IOH=-14.811;IOD=0.000;IOD=0.000;AOZ=-3644.285;AOZ=-3629.473;ABZ=0.246;ABZ=-41.550;BCS=-235842.150;FIC=0.197;LQR=0.030;MQ10=0.000;MQ10=0.905;MQ20=0.920;MQ30=0.937;MENDEL=0;SVM=-1.0337151;AN=86;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564522	.	A	G	0.0	SVM	NS=464;AF=0.002;AC=2;s50=1.00;LBS=766,2333,106,182,66,36,61,79;OBS=7168,18651,17,14,67,150,0,4;STR=-0.007;STZ=-1.050;CBR=0.005;CBZ=0.741;QBR=-0.024;QBZ=-3.943;MBR=0.085;MSR=0.043;MBZ=13.791;IOR=0.177;IOZ=-12.747;IOH=0.000;IOD=-0.001;AOI=-30.771;AOZ=-18.024;ABE=1.000;ABZ=8.590;BCS=-956.117;FIC=1.000;LQR=0.109;MQ0=0.000;MQ10=0.677;MQ20=0.745;MQ30=0.924;MENDEL=1;SVM=-0.3886833;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564523	.	T	C	0.0	SVM	NS=464;AF=0.001;AC=1;s50=1.00;LBS=70,6,85,11,41,14,1013,420;OBS=9,5,19,38,2,2,6880,20756;STR=-0.009;STZ=-1.535;CBR=0.008;CBZ=1.337;QBR=0.005;QBZ=0.827;MBR=0.050;MSR=0.039;MBZ=8.259;IOR=0.116;IOZ=-11.734;IOH=0.000;IOD=-0.001;AOI=-16.461;AOZ=-4.726;ABE=0.848;ABZ=18.158;BCS=18.709;FIC=-0.037;LQR=0.052;MQ0=0.000;MQ10=0.675;MQ20=0.740;MQ30=0.924;MENDEL=1;SVM=-0.01630528;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564546	.	C	T	0.0	SVM	NS=463;AF=0.002;AC=2;s50=1.00;LBS=1,12,172,247,1,6,22,63;OBS=4,8,12575,16721,0,0,213,345;STR=0.013;STZ=2.239;CBR=-0.012;CBZ=-2.016;QBR=-0.116;QBZ=-19.988;MBR=0.151;MSR=0.075;MBZ=26.018;IOR=0.085;IOZ=-11.403;IOH=0.000;IOD=-0.000;AOI=-67.373;AOZ=-55.970;ABE=0.992;ABZ=6.399;BCS=-2536.932;FIC=1.000;LQR=0.017;MQ0=0.000;MQ10=0.734;MQ20=0.789;MQ30=0.937;MENDEL=0;SVM=-0.28511059;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564575	.	C	T	0.0	SVM	NS=463;AF=0.002;AC=2;s50=1.00;LBS=7,1,223,180,5,4,19,37;OBS=1,1,30354,34736,2,0,436,619;STR=0.013;STZ=3.424;CBR=0.020;CBZ=5.077;QBR=-0.036;QBZ=-9.287;MBR=0.251;MSR=0.055;MBZ=64.483;IOR=0.014;IOZ=-16.806;IOH=0.000;IOD=0.000;AOI=-89.425;AOZ=-72.619;ABE=1.000;ABZ=0.150;BCS=-5170.956;FIC=1.000;LQR=0.007;MQ0=0.000;MQ10=0.877;MQ20=0.901;MQ30=0.962;MENDEL=0;SVM=-0.89411041;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564598	rs144350286	A	G	0.0	SVM	NS=461;AF=0.985;AC=894;s50=0.95;LBS=172,268,7,8,68,91,2,17;OBS=2052,2843,1,0,53373,60604,0,1;STZ=-0.020;STZ=-6.738;CBZ=0.004;CBZ=1.529;QBZ=0.147;QBZ=50.737;MBR=-0.805;MSR=0.016;MBZ=-277.532;IOZ=0.005;IOH=-20.077;IOD=0.000;IOD=-0.000;AOZ=-6590.803;AOZ=-6570.726;ABZ=0.142;ABZ=-30.065;BCS=-619411.661;FIC=0.224;LQR=0.005;MQ10=0.000;MQ10=0.940;MQ20=0.950;MQ30=0.971;MENDEL=4;SVM=-0.81910141;AN=922;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564643	.	A	G	0.0	SVM	NS=464;AF=0.001;AC=1;s50=1.00;LBS=722,991,74,1,35,6,35,1;OBS=18325,37364,8,1,53,51,5,1;STR=-0.017;STZ=-3.931;CBR=0.000;CBZ=0.064;QBR=-0.027;QBZ=-6.476;MBR=0.065;MSR=0.010;MBZ=15.455;IOR=0.049;IOZ=-17.154;IOH=0.000;IOD=-0.000;AOI=-23.669;AOZ=-6.515;ABE=0.739;ABZ=11.805;BCS=93.890;FIC=-0.036;LQR=0.030;MQ0=0.000;MQ10=0.917;MQ20=0.932;MQ30=0.963;MENDEL=0;SVM=-0.33271066;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564654	rs147404388	G	A	0.0	SVM	NS=464;AF=0.976;AC=891;s50=0.96;LBS=96,191,23,21,488,224,25,6;OBS=23193,58678,4,5,1365,3117,1,1;STZ=0.010;STZ=3.079;CBZ=0.024;CBZ=7.139;QBZ=0.096;QBZ=28.201;MBR=-0.805;MSR=0.004;MBZ=-236.631;IOZ=0.034;IOH=-17.693;IOD=0.000;IOD=-0.000;AOZ=-5372.399;AOZ=-5354.705;ABZ=0.169;ABZ=-31.910;BCS=-440339.859;FIC=-0.059;LQR=0.011;MQ10=0.000;MQ10=0.924;MQ20=0.936;MQ30=0.964;MENDEL=3;SVM=-0.65930522;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564663	.	G	A	0.0	SVM	NS=464;AF=0.012;AC=12;s50=1.00;LBS=79,155,50,3,789,609,62,10;OBS=690,1683,4,2,14019,41082,3,0;STR=-0.017;STZ=-3.983;CBR=0.016;CBZ=3.836;QBR=-0.041;QBZ=-9.766;MBR=0.401;MSR=0.013;MBZ=96.056;IOR=0.029;IOZ=-17.290;IOH=0.000;IOD=-0.000;AOI=-176.117;AOZ=-158.826;ABE=1.000;ABZ=4.007;BCS=-11846.999;FIC=1.000;LQR=0.028;MQ0=0.000;MQ10=0.901;MQ20=0.916;MQ30=0.962;MENDEL=1;SVM=-0.71882869;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564679	.	A	G	0.0	SVM	NS=464;AF=0.002;AC=2;s50=1.00;LBS=229,2478,18,88,9,130,9,85;OBS=5571,19170,1,4,34,83,0,4;STR=-0.011;STZ=-1.742;CBR=0.036;CBZ=5.715;QBR=0.008;QBZ=1.251;MBR=0.102;MSR=-0.047;MBZ=16.088;IOR=0.049;IOZ=-13.236;IOH=0.000;IOD=-0.000;AOI=-23.095;AOZ=-9.859;ABE=1.000;ABZ=6.525;BCS=-370.901;FIC=0.998;LQR=0.103;MQ0=0.000;MQ10=0.866;MQ20=0.889;MQ30=0.947;MENDEL=1;SVM=-0.84341975;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564730	.	A	G	0.0	SVM	NS=464;AF=0.006;AC=6;s50=1.00;LBS=93,183,6,6,11,27,1,3;OBS=8240,12908,0,1,450,857,1,1;STR=0.022;STZ=3.258;CBR=0.001;CBZ=0.218;QBR=0.008;QBZ=1.210;MBR=0.321;MSR=0.044;MBZ=48.108;IOR=0.028;IOZ=-10.300;IOH=0.000;IOD=-0.000;AOI=-157.363;AOZ=-147.062;ABE=1.000;ABZ=5.111;BCS=-6950.373;FIC=0.994;LQR=0.014;MQ0=0.000;MQ10=0.768;MQ20=0.808;MQ30=0.940;MENDEL=1;SVM=-0.28772747;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564754	.	T	C	0.0	SVM	NS=463;AF=0.010;AC=10;s50=1.00;LBS=18,7,26,36,5,10,369,432;OBS=3,1,1013,2276,1,3,9135,18601;STR=0.014;STZ=2.463;CBR=-0.010;CBZ=-1.814;QBR=0.041;QBZ=7.147;MBR=0.314;MSR=0.043;MBZ=55.385;IOR=0.050;IOZ=-12.336;IOH=0.000;IOD=-0.000;AOI=-320.748;AOZ=-308.413;ABE=1.000;ABZ=4.881;BCS=-17797.712;FIC=0.993;LQR=0.027;MQ0=0.000;MQ10=0.572;MQ20=0.625;MQ30=0.883;MENDEL=1;SVM=-0.21861369;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564766	rs144287063	T	C	0.0	SVM	NS=462;AF=0.060;AC=56;s50=0.99;LBS=43,78,226,321,35,51,1074,1037;OBS=12,10,5028,11082,2,13,9489,21805;STZ=-0.009;STZ=-1.989;CBZ=-0.088;CBZ=-19.222;QBZ=0.153;QBZ=33.285;MBR=0.402;MSR=0.060;MBZ=87.512;IOZ=0.105;IOH=-17.741;IOD=0.000;IOD=-0.001;AOZ=-1068.457;AOZ=-1050.716;ABZ=1.000;ABZ=3.635;BCS=-86359.171;FIC=0.997;LQR=0.053;MQ10=0.000;MQ10=0.340;MQ20=0.447;MQ30=0.881;MENDEL=5;SVM=-0.68412622;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564798	.	T	C	0.0	SVM	NS=447;AF=0.277;AC=248;s50=0.96;LBS=25,2,4421,2320,21,4,458,613;OBS=3,6,19491,47202,1,6,8333,13328;STR=0.086;STZ=25.452;CBR=0.022;CBZ=6.506;QBR=0.016;QBZ=4.861;MBR=0.478;MSR=0.111;MBZ=142.120;IOR=0.027;IOZ=-23.927;IOH=0.000;IOD=-0.000;AOI=-3258.690;AOZ=-3234.763;ABE=1.000;ABZ=3.172;BCS=-347670.685;FIC=0.997;LQR=0.081;MQ0=0.000;MQ10=0.251;MQ20=0.372;MQ30=0.850;MENDEL=19;SVM=-0.77828697;AN=894;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564862	rs148735831	T	C	0.0	SVM	NS=464;AF=0.996;AC=922;s50=0.99;LBS=34,81,935,3439,15,72,338,257;OBS=9,4,86379,100224,2,1,1727,1736;STR=0.010;STZ=4.186;CBR=-0.000;CBZ=-0.112;QBR=0.048;QBZ=21.069;MBR=-0.550;MSR=-0.018;MBZ=-239.697;IOR=0.019;IOZ=-28.939;IOH=0.000;IOD=-0.000;AOI=-7503.477;AOZ=-7474.538;ABE=0.139;ABZ=-8.667;BCS=-1019345.159;FIC=0.741;LQR=0.025;MQ0=0.000;MQ10=0.923;MQ20=0.938;MQ30=0.978;MENDEL=0;SVM=-0.53496666;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564868	rs142623646	T	C	0.0	SVM	NS=464;AF=0.998;AC=925;s50=1.00;LBS=123,10,3016,1834,54,1,272,93;OBS=34,27,80997,98174,4,6,1379,1533;STR=0.005;STZ=2.313;CBR=0.004;CBZ=1.608;QBR=0.010;QBZ=4.155;MBR=-0.533;MSR=0.001;MBZ=-227.303;IOR=0.077;IOZ=-29.210;IOH=0.000;IOD=-0.000;AOI=-7128.981;AOZ=-7099.771;ABE=0.115;ABZ=-9.609;BCS=-963746.621;FIC=0.985;LQR=0.028;MQ0=0.000;MQ10=0.919;MQ20=0.935;MQ30=0.978;MENDEL=0;SVM=-0.43829688;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564921	.	T	C	0.0	SVM	NS=464;AF=0.017;AC=14;s50=1.00;LBS=94,188,186,227,72,215,2049,2193;OBS=12,10,1474,2650,6,31,23342,38427;STR=0.010;STZ=2.623;CBR=-0.020;CBZ=-5.196;QBR=0.049;QBZ=12.614;MBR=0.337;MSR=0.042;MBZ=86.437;IOR=0.125;IOZ=-20.356;IOH=0.000;IOD=-0.001;AOI=-252.892;AOZ=-232.536;ABE=1.000;ABZ=4.956;BCS=-21713.431;FIC=1.000;LQR=0.066;MQ0=0.000;MQ10=0.787;MQ20=0.823;MQ30=0.952;MENDEL=3;SVM=-0.57170597;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	564985	.	A	G	0.0	SVM	NS=464;AF=0.004;AC=4;s50=1.00;LBS=1306,5977,45,58,51,62,43,41;OBS=30821,47963,7,9,323,556,14,3;STR=0.005;STZ=1.427;CBR=-0.008;CBZ=-2.291;QBR=0.020;QBZ=5.522;MBR=0.142;MSR=0.005;MBZ=40.035;IOR=0.057;IOZ=-23.381;IOH=0.000;IOD=-0.000;AOI=-66.158;AOZ=-42.776;ABE=1.000;ABZ=0.217;BCS=-3944.047;FIC=1.000;LQR=0.085;MQ0=0.000;MQ10=0.799;MQ20=0.834;MQ30=0.951;MENDEL=1;SVM=-0.67247608;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565006	rs142650224	T	C	0.0	SVM	NS=463;AF=1.000;AC=922;s50=0.98;LBS=7,10,195,535,9,4,93,207;OBS=10,75,29209,70108,4,44,660,1627;STZ=-0.002;STZ=-0.563;CBZ=0.002;CBZ=0.690;QBZ=0.074;QBZ=23.618;MBR=-0.412;MSR=-0.018;MBZ=-131.381;IOZ=0.282;IOH=-18.239;IOD=1.000;IOD=0.999;AOZ=-6180.905;AOZ=-6162.666;ABZ=0.500;ABZ=0.000;BCS=-551815.291;FIC=-nan;LQR=0.010;MQ10=0.000;MQ10=0.839;MQ20=0.873;MQ30=0.965;MENDEL=1;SVM=-0.14090275;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565111	.	T	C	0.0	SVM	NS=461;AF=0.021;AC=20;s50=0.99;LBS=30,82,157,205,71,91,1806,2484;OBS=3,43,1959,2843,10,18,28836,48494;STR=-0.017;STZ=-4.872;CBR=0.007;CBZ=1.866;QBR=-0.001;QBZ=-0.277;MBR=0.238;MSR=0.034;MBZ=68.182;IOR=0.120;IOZ=-23.298;IOH=0.000;IOD=-0.001;AOI=-259.802;AOZ=-236.504;ABE=0.995;ABZ=3.875;BCS=-24447.089;FIC=1.000;LQR=0.054;MQ0=0.000;MQ10=0.724;MQ20=0.770;MQ30=0.947;MENDEL=2;SVM=-0.91036315;AN=922;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565130	.	G	A	0.0	SVM	NS=464;AF=0.002;AC=2;s50=1.00;LBS=39,111,45,29,1370,1529,34,54;OBS=216,284,2,3,39791,61362,7,10;STR=-0.006;STZ=-1.771;CBR=-0.001;CBZ=-0.278;QBR=-0.009;QBZ=-2.906;MBR=0.071;MSR=0.031;MBZ=22.655;IOR=0.044;IOZ=-21.851;IOH=0.000;IOD=-0.000;AOI=-47.773;AOZ=-25.922;ABE=1.000;ABZ=2.486;BCS=-2018.102;FIC=1.000;LQR=0.029;MQ0=0.000;MQ10=0.775;MQ20=0.817;MQ30=0.956;MENDEL=1;SVM=-0.34827989;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565136	.	T	C	0.0	SVM	NS=464;AF=0.002;AC=2;s50=1.00;LBS=47,108,59,101,22,110,1957,1887;OBS=7,25,156,247,2,8,44248,65950;STR=0.002;STZ=0.579;CBR=0.005;CBZ=1.791;QBR=-0.002;QBZ=-0.671;MBR=0.078;MSR=0.025;MBZ=26.092;IOR=0.075;IOZ=-22.779;IOH=0.000;IOD=-0.000;AOI=-42.172;AOZ=-19.392;ABE=1.000;ABZ=2.464;BCS=-1558.007;FIC=0.999;LQR=0.035;MQ0=0.000;MQ10=0.784;MQ20=0.825;MQ30=0.960;MENDEL=0;SVM=-0.32732411;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565169	.	T	C	0.0	SVM	NS=464;AF=0.004;AC=4;s50=1.00;LBS=6,529,61,214,2,61,943,12535;OBS=1,39,383,694,5,55,43455,54261;STR=0.019;STZ=5.847;CBR=0.015;CBZ=4.644;QBR=-0.009;QBZ=-2.795;MBR=0.116;MSR=0.027;MBZ=36.318;IOR=0.124;IOZ=-26.612;IOH=0.000;IOD=-0.001;AOI=-71.209;AOZ=-44.597;ABE=1.000;ABZ=3.338;BCS=-4664.556;FIC=1.000;LQR=0.122;MQ0=0.000;MQ10=0.820;MQ20=0.852;MQ30=0.964;MENDEL=1;SVM=-0.6109334;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565196	.	T	C	0.0	SVM	NS=463;AF=0.002;AC=2;s50=1.00;LBS=31,15,51,23,18,18,1672,478;OBS=0,7,333,622,0,13,34525,58558;STR=0.005;STZ=1.405;CBR=0.003;CBZ=0.832;QBR=-0.007;QBZ=-2.197;MBR=0.142;MSR=0.038;MBZ=43.553;IOR=0.043;IOZ=-21.181;IOH=0.000;IOD=-0.000;AOI=-72.839;AOZ=-51.658;ABE=1.000;ABZ=2.010;BCS=-4489.699;FIC=0.999;LQR=0.023;MQ0=0.000;MQ10=0.826;MQ20=0.857;MQ30=0.964;MENDEL=0;SVM=-0.45690693;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565238	.	T	C	0.0	SVM	NS=464;AF=0.004;AC=4;s50=1.00;LBS=19,97,23,52,6,46,701,4570;OBS=7,74,357,885,12,22,31210,51318;STR=0.023;STZ=6.540;CBR=0.030;CBZ=8.620;QBR=-0.008;QBZ=-2.224;MBR=0.146;MSR=0.006;MBZ=42.387;IOR=0.177;IOZ=-23.125;IOH=0.000;IOD=-0.001;AOI=-82.155;AOZ=-59.029;ABE=0.948;ABZ=0.139;BCS=-5363.064;FIC=1.000;LQR=0.060;MQ0=0.000;MQ10=0.783;MQ20=0.832;MQ30=0.966;MENDEL=0;SVM=-0.52704985;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565253	.	T	C	0.0	SVM	NS=464;AF=0.001;AC=1;s50=1.00;LBS=38,45,64,70,27,38,2294,2819;OBS=2,22,50,109,3,34,37351,59255;STR=0.006;STZ=1.843;CBR=0.005;CBZ=1.479;QBR=0.000;QBZ=0.144;MBR=0.034;MSR=0.014;MBZ=10.582;IOR=0.097;IOZ=-23.870;IOH=0.000;IOD=-0.001;AOI=-30.093;AOZ=-6.223;ABE=0.706;ABZ=12.085;BCS=63.924;FIC=-0.036;LQR=0.051;MQ0=0.000;MQ10=0.744;MQ20=0.804;MQ30=0.949;MENDEL=1;SVM=-0.018152506;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565265	rs140100941	A	G	0.0	SVM	NS=461;AF=0.201;AC=184;s50=0.99;LBS=1641,1242,45,21,1516,4254,11,50;OBS=33468,39551,4,15,14400,19942,3,12;STZ=0.037;STZ=12.001;CBZ=0.035;CBZ=11.621;QBZ=-0.107;QBZ=-35.057;MBR=0.642;MSR=0.041;MBZ=210.386;IOZ=0.053;IOH=-24.694;IOD=0.000;IOD=-0.000;AOZ=-1635.057;AOZ=-1610.363;ABZ=0.974;ABZ=0.212;BCS=-177700.401;FIC=1.000;LQR=0.075;MQ10=0.000;MQ10=0.669;MQ20=0.733;MQ30=0.943;MENDEL=12;SVM=-1.056354;AN=922;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565282	.	A	G	0.0	SVM	NS=462;AF=0.002;AC=2;s50=1.00;LBS=485,1671,15,23,18,32,16,35;OBS=54329,69834,3,8,225,339,8,21;STR=0.005;STZ=1.838;CBR=0.005;CBZ=1.892;QBR=0.003;QBZ=1.148;MBR=0.096;MSR=0.048;MBZ=33.837;IOR=0.064;IOZ=-24.247;IOH=0.589;IOD=0.589;AOI=-50.221;AOZ=-25.974;ABE=0.629;ABZ=0.000;BCS=-2445.788;FIC=1.000;LQR=0.017;MQ0=0.000;MQ10=0.739;MQ20=0.809;MQ30=0.958;MENDEL=0;SVM=-0.60176995;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565286	rs140432825	C	T	0.0	SVM	NS=461;AF=1.000;AC=921;s50=0.99;LBS=18,426,128,1445,10,151,520,4822;OBS=5,40,1106,1786,4,25,64385,83711;STZ=-0.014;STZ=-5.619;CBZ=0.009;CBZ=3.379;QBZ=0.014;QBZ=5.310;MBR=-0.211;MSR=0.103;MBZ=-82.068;IOZ=0.080;IOH=-29.296;IOD=1.000;IOD=1.000;AOZ=-5884.680;AOZ=-5855.384;ABZ=0.500;ABZ=0.000;BCS=-789063.180;FIC=-nan;LQR=0.044;MQ10=0.000;MQ10=0.643;MQ20=0.718;MQ30=0.932;MENDEL=0;SVM=-0.005575039;AN=922;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565305	.	T	C	0.0	SVM	NS=464;AF=0.012;AC=12;s50=1.00;LBS=110,213,139,237,55,190,3104,3544;OBS=28,15,1395,1891,4,32,43584,64111;STR=-0.007;STZ=-2.284;CBR=-0.007;CBZ=-2.383;QBR=0.024;QBZ=8.139;MBR=0.143;MSR=0.056;MBZ=47.801;IOR=0.120;IOZ=-24.045;IOH=0.014;IOD=0.014;AOI=-180.221;AOZ=-156.177;ABE=0.984;ABZ=0.001;BCS=-17601.127;FIC=1.000;LQR=0.060;MQ0=0.000;MQ10=0.439;MQ20=0.520;MQ30=0.821;MENDEL=1;SVM=-0.12008305;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565316	.	A	G	0.0	PASS	NS=464;AF=0.017;AC=16;s50=1.00;LBS=2370,2371,82,66,158,177,82,64;OBS=44399,67106,14,10,1629,2360,20,11;STR=-0.004;STZ=-1.295;CBR=0.026;CBZ=8.965;QBR=0.019;QBZ=6.298;MBR=0.099;MSR=0.037;MBZ=33.671;IOR=0.079;IOZ=-25.351;IOH=0.011;IOD=0.011;AOI=-206.267;AOZ=-180.915;ABE=0.989;ABZ=0.001;BCS=-20608.446;FIC=1.000;LQR=0.042;MQ0=0.000;MQ10=0.206;MQ20=0.322;MQ30=0.809;MENDEL=0;SVM=0.079381931;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565319	.	G	A	0.0	PASS	NS=464;AF=0.010;AC=10;s50=1.00;LBS=10,10,13,14,1547,1336,11,24;OBS=323,486,3,2,48434,70122,4,2;STZ=0.002;STZ=0.528;CBZ=-0.002;CBZ=-0.606;QBZ=-0.001;QBZ=-0.422;MBR=-0.166;MSR=0.021;MBZ=-57.372;IOZ=0.019;IOH=-24.061;IOD=0.063;IOD=0.063;AOZ=-62.799;AOZ=-38.738;ABZ=0.455;ABZ=-0.000;BCS=-3513.481;FIC=1.000;LQR=0.024;MQ10=0.000;MQ10=0.114;MQ20=0.237;MQ30=0.785;MENDEL=2;SVM=1.0091507;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565334	.	A	G	0.0	PASS	NS=463;AF=0.002;AC=2;s50=1.00;LBS=392,1819,38,36,21,56,19,48;OBS=32765,35660,4,7,215,245,10,4;STR=0.002;STZ=0.488;CBR=0.001;CBZ=0.238;QBR=-0.009;QBZ=-2.236;MBR=0.037;MSR=-0.010;MBZ=9.621;IOR=0.072;IOZ=-18.032;IOH=0.000;IOD=-0.000;AOI=-46.752;AOZ=-28.720;ABE=1.000;ABZ=0.911;BCS=-2094.552;FIC=1.000;LQR=0.032;MQ0=0.000;MQ10=0.294;MQ20=0.384;MQ30=0.775;MENDEL=1;SVM=0.33642197;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565340	.	A	G	0.0	PASS	NS=463;AF=0.002;AC=2;s50=1.00;LBS=535,1090,23,22,26,54,25,22;OBS=31043,39248,12,30,384,464,17,28;STR=-0.002;STZ=-0.656;CBR=0.002;CBZ=0.627;QBR=-0.012;QBZ=-3.139;MBR=0.042;MSR=0.007;MBZ=11.274;IOR=0.181;IOZ=-19.842;IOH=0.000;IOD=-0.001;AOI=-66.507;AOZ=-46.665;ABE=1.000;ABZ=3.278;BCS=-4107.399;FIC=1.000;LQR=0.023;MQ0=0.000;MQ10=0.367;MQ20=0.470;MQ30=0.867;MENDEL=0;SVM=0.052058387;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565370	rs150290022	G	A	0.0	SVM	NS=367;AF=0.223;AC=170;s50=0.79;LBS=480,1953,54,144,572,1995,36,161;OBS=10178,21667,8,19,14715,27636,4,24;STZ=0.029;STZ=7.950;CBZ=-0.012;CBZ=-3.137;QBZ=0.027;QBZ=7.311;MBR=0.263;MSR=0.009;MBZ=71.726;IOZ=0.120;IOH=-20.040;IOD=0.000;IOD=-0.001;AOZ=-1853.577;AOZ=-1833.537;ABZ=1.000;ABZ=3.910;BCS=-171152.151;FIC=0.998;LQR=0.063;MQ10=0.000;MQ10=0.327;MQ20=0.438;MQ30=0.863;MENDEL=11;SVM=-0.87338078;AN=734;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565374	rs9701779	A	G	0.0	SVM	NS=365;AF=0.145;AC=104;s50=0.79;LBS=402,1616,39,50,633,630,26,35;OBS=13732,28154,7,24,11770,21851,4,7;STR=-0.023;STZ=-6.421;CBR=-0.027;CBZ=-7.500;QBR=0.063;QBZ=17.301;MBR=0.285;MSR=-0.002;MBZ=78.444;IOR=0.094;IOZ=-20.128;IOH=0.000;IOD=-0.001;AOI=-1949.698;AOZ=-1929.570;ABE=0.249;ABZ=-1.506;BCS=-181902.254;FIC=0.993;LQR=0.042;MQ0=0.000;MQ10=0.361;MQ20=0.475;MQ30=0.872;MENDEL=5;SVM=-0.65258568;AN=730;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565403	.	G	A	0.0	SVM	NS=423;AF=0.043;AC=38;s50=0.91;LBS=410,599,150,26,1928,986,147,30;OBS=3460,6859,13,7,20187,51062,6,17;STR=-0.038;STZ=-10.878;CBR=0.020;CBZ=5.749;QBR=-0.032;QBZ=-9.027;MBR=0.565;MSR=-0.057;MBZ=161.310;IOR=0.078;IOZ=-22.597;IOH=0.000;IOD=-0.001;AOI=-550.255;AOZ=-527.658;ABE=1.000;ABZ=3.604;BCS=-53412.169;FIC=0.996;LQR=0.046;MQ0=0.000;MQ10=0.758;MQ20=0.806;MQ30=0.958;MENDEL=1;SVM=-1.136393;AN=846;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565406	rs144191907	C	T	0.0	SVM	NS=409;AF=1.000;AC=817;s50=0.87;LBS=44,17,436,111,42,16,961,297;OBS=11,25,495,1414,2,16,28888,63639;STZ=-0.016;STZ=-4.933;CBZ=-0.083;CBZ=-25.636;QBZ=0.189;QBZ=58.094;MBR=-0.268;MSR=-0.007;MBZ=-82.452;IOZ=0.114;IOH=-20.525;IOD=1.000;IOD=0.999;AOZ=-5219.519;AOZ=-5198.994;ABZ=0.500;ABZ=0.000;BCS=-506251.046;FIC=-nan;LQR=0.019;MQ10=0.000;MQ10=0.823;MQ20=0.867;MQ30=0.972;MENDEL=1;SVM=-0.7913379;AN=818;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565433	rs9701055	C	T	0.0	SVM	NS=424;AF=0.011;AC=10;s50=0.91;LBS=11,75,1736,2824,3,9,233,1752;OBS=2,62,29288,59533,2,3,4938,8454;STR=-0.028;STZ=-8.913;CBR=-0.030;CBZ=-9.729;QBR=0.011;QBZ=3.449;MBR=0.563;MSR=-0.028;MBZ=179.842;IOR=0.087;IOZ=-26.959;IOH=0.000;IOD=-0.001;AOI=-601.223;AOZ=-574.264;ABE=1.000;ABZ=2.209;BCS=-68522.305;FIC=0.998;LQR=0.060;MQ0=0.000;MQ10=0.844;MQ20=0.881;MQ30=0.974;MENDEL=1;SVM=-1.1200751;AN=848;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565454	.	T	C	0.0	SVM	NS=446;AF=1.000;AC=892;s50=0.95;LBS=8,22,339,453,4,3,45,60;OBS=4,17,43670,98815,0,2,484,1186;STR=-0.004;STZ=-1.459;CBR=-0.008;CBZ=-3.091;QBR=0.046;QBZ=17.585;MBR=-0.589;MSR=0.000;MBZ=-223.802;IOR=0.041;IOZ=-23.104;IOH=1.000;IOD=1.000;AOI=-7158.504;AOZ=-7135.400;ABE=0.500;ABZ=0.000;BCS=-797322.772;FIC=-nan;LQR=0.006;MQ0=0.000;MQ10=0.954;MQ20=0.966;MQ30=0.989;MENDEL=0;SVM=-0.49386742;AN=892;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565464	.	T	C	0.0	SVM	NS=446;AF=1.000;AC=892;s50=0.95;LBS=26,74,708,2051,10,60,64,113;OBS=2,10,40334,88007,0,4,449,1116;STR=-0.006;STZ=-2.308;CBR=-0.007;CBZ=-2.451;QBR=0.049;QBZ=17.683;MBR=-0.610;MSR=0.004;MBZ=-219.826;IOR=0.027;IOZ=-23.836;IOH=1.000;IOD=1.000;AOI=-6261.863;AOZ=-6238.027;ABE=0.500;ABZ=0.000;BCS=-704901.241;FIC=-nan;LQR=0.022;MQ0=0.000;MQ10=0.954;MQ20=0.965;MQ30=0.985;MENDEL=1;SVM=-0.35911289;AN=892;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565467	rs147539193	A	G	0.0	SVM	NS=459;AF=0.006;AC=6;s50=0.98;LBS=1340,2304,103,123,65,139,81,91;OBS=40532,87871,6,12,327,761,20,10;STR=0.003;STZ=1.056;CBR=0.001;CBZ=0.463;QBR=-0.010;QBZ=-3.678;MBR=0.309;MSR=0.007;MBZ=111.324;IOR=0.064;IOZ=-26.622;IOH=0.000;IOD=-0.000;AOI=-72.950;AOZ=-46.329;ABE=1.000;ABZ=2.003;BCS=-4929.924;FIC=0.998;LQR=0.029;MQ0=0.000;MQ10=0.960;MQ20=0.970;MQ30=0.987;MENDEL=1;SVM=-1.2609605;AN=918;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565490	rs141292355	T	C	0.0	SVM	NS=451;AF=1.000;AC=898;s50=0.95;LBS=22,11,725,518,5,3,58,58;OBS=2,6,29681,70657,3,1,399,992;STR=-0.002;STZ=-0.716;CBR=0.009;CBZ=2.943;QBR=0.025;QBZ=7.849;MBR=-0.703;MSR=-0.002;MBZ=-224.138;IOR=0.028;IOZ=-20.298;IOH=1.000;IOD=1.000;AOI=-5747.100;AOZ=-5726.802;ABE=0.500;ABZ=0.000;BCS=-557590.524;FIC=-nan;LQR=0.013;MQ0=0.000;MQ10=0.964;MQ20=0.973;MQ30=0.986;MENDEL=1;SVM=-0.3132132;AN=902;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565508	rs145079224	G	A	0.0	SVM	NS=452;AF=0.999;AC=897;s50=0.95;LBS=1200,1565,62,22,140,100,50,22;OBS=31313,56044,8,13,462,715,14,6;STR=0.008;STZ=2.428;CBR=-0.005;CBZ=-1.460;QBR=0.027;QBZ=8.048;MBR=-0.391;MSR=-0.084;MBZ=-116.389;IOR=0.085;IOZ=-21.063;IOH=0.000;IOD=-0.000;AOI=-4818.665;AOZ=-4797.602;ABE=0.882;ABZ=1.246;BCS=-470169.108;FIC=0.726;LQR=0.033;MQ0=0.000;MQ10=0.879;MQ20=0.901;MQ30=0.969;MENDEL=1;SVM=-0.81223274;AN=904;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565520	.	A	G	0.0	SVM	NS=458;AF=0.011;AC=8;s50=0.98;LBS=2742,1810,107,42,106,120,66,61;OBS=36157,37841,8,12,395,460,11,11;STR=0.006;STZ=1.547;CBR=0.016;CBZ=4.270;QBR=0.009;QBZ=2.391;MBR=0.096;MSR=-0.037;MBZ=26.241;IOR=0.084;IOZ=-21.444;IOH=0.000;IOD=-0.001;AOI=-66.421;AOZ=-44.976;ABE=1.000;ABZ=4.982;BCS=-3854.598;FIC=0.998;LQR=0.060;MQ0=0.000;MQ10=0.771;MQ20=0.810;MQ30=0.947;MENDEL=2;SVM=-1.3253786;AN=916;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565527	.	T	C	0.0	SVM	NS=441;AF=0.207;AC=184;s50=0.94;LBS=29,112,175,582,15,112,1427,1327;OBS=4,5,16229,14569,2,8,21955,20898;STZ=-0.014;STZ=-3.916;CBZ=0.058;CBZ=15.842;QBZ=0.233;QBZ=63.297;MBR=0.608;MSR=-0.012;MBZ=164.897;IOZ=0.048;IOH=-19.424;IOD=0.000;IOD=-0.000;AOZ=-1855.841;AOZ=-1836.417;ABZ=1.000;ABZ=4.691;BCS=-171368.902;FIC=0.998;LQR=0.046;MQ10=0.000;MQ10=0.655;MQ20=0.714;MQ30=0.924;MENDEL=20;SVM=-1.0024727;AN=882;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565538	.	C	A	0.0	SVM	NS=430;AF=0.002;AC=2;s50=0.92;LBS=11,26,366,373,7,3,8,3;OBS=325,330,37321,37873,2,1,12,8;STR=0.000;STZ=0.007;CBR=-0.002;CBZ=-0.621;QBR=-0.031;QBZ=-8.570;MBR=0.112;MSR=-0.051;MBZ=30.873;IOR=0.060;IOZ=-18.973;IOH=0.000;IOD=-0.000;AOI=-58.297;AOZ=-39.324;ABE=0.998;ABZ=3.278;BCS=-2948.343;FIC=0.996;LQR=0.010;MQ0=0.000;MQ10=0.751;MQ20=0.801;MQ30=0.941;MENDEL=0;SVM=-1.3684401;AN=860;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565541	rs145787647	A	G	0.0	SVM	NS=423;AF=0.994;AC=834;s50=0.88;LBS=620,173,121,42,1197,1996,116,51;OBS=1161,1169,3,2,38207,38952,7,8;STZ=0.001;STZ=0.296;CBZ=0.018;CBZ=5.188;QBZ=0.054;QBZ=15.224;MBR=-0.321;MSR=-0.046;MBZ=-90.479;IOZ=0.050;IOH=-19.572;IOD=0.000;IOD=-0.000;AOZ=-4585.029;AOZ=-4565.457;ABZ=0.432;ABZ=-0.887;BCS=-412229.309;FIC=0.376;LQR=0.048;MQ10=0.000;MQ10=0.767;MQ20=0.807;MQ30=0.933;MENDEL=3;SVM=-0.48932262;AN=846;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565591	rs141914161	C	T	0.0	SVM	NS=462;AF=1.000;AC=918;s50=0.97;LBS=132,235,1330,1711,87,222,2510,1206;OBS=19,8,860,961,7,17,32072,46570;STR=0.020;STZ=5.532;CBR=0.022;CBZ=6.315;QBR=0.093;QBZ=26.487;MBR=-0.301;MSR=-0.052;MBZ=-85.476;IOR=0.113;IOZ=-20.047;IOH=1.000;IOD=0.999;AOI=-4552.901;AOZ=-4532.855;ABE=0.500;ABZ=0.000;BCS=-423849.776;FIC=-nan;LQR=0.077;MQ0=0.000;MQ10=0.790;MQ20=0.831;MQ30=0.948;MENDEL=0;SVM=-0.32695406;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565598	.	T	C	0.0	SVM	NS=462;AF=0.004;AC=4;s50=0.98;LBS=40,28,73,26,21,23,1508,874;OBS=4,48,297,640,1,20,32678,55970;STR=0.011;STZ=3.251;CBR=0.025;CBZ=7.602;QBR=-0.034;QBZ=-10.202;MBR=0.125;MSR=-0.034;MBZ=37.291;IOR=0.130;IOZ=-22.133;IOH=0.000;IOD=-0.001;AOI=-69.036;AOZ=-46.903;ABE=1.000;ABZ=1.478;BCS=-4076.496;FIC=1.000;LQR=0.027;MQ0=0.000;MQ10=0.757;MQ20=0.815;MQ30=0.948;MENDEL=0;SVM=-1.3109174;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565604	.	G	A	0.0	SVM	NS=462;AF=0.023;AC=22;s50=0.99;LBS=124,159,74,21,1608,1770,42,27;OBS=2389,3784,24,6,34445,64136,76,15;STR=-0.019;STZ=-6.005;CBR=0.002;CBZ=0.497;QBR=0.009;QBZ=2.997;MBR=0.291;MSR=-0.050;MBZ=94.213;IOR=0.178;IOZ=-23.599;IOH=0.000;IOD=-0.001;AOI=-320.734;AOZ=-297.135;ABE=1.000;ABZ=5.655;BCS=-32331.566;FIC=1.000;LQR=0.034;MQ0=0.000;MQ10=0.755;MQ20=0.809;MQ30=0.945;MENDEL=3;SVM=-1.1301437;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565619	.	A	G	0.0	SVM	NS=464;AF=0.012;AC=12;s50=1.00;LBS=866,786,24,7,29,31,25,5;OBS=32596,65681,2,7,1124,2032,6,2;STR=-0.009;STZ=-2.878;CBR=0.019;CBZ=6.204;QBR=0.007;QBZ=2.352;MBR=0.204;MSR=-0.010;MBZ=65.032;IOR=0.037;IOZ=-21.165;IOH=0.000;IOD=-0.000;AOI=-193.522;AOZ=-172.357;ABE=0.077;ABZ=-4.314;BCS=-16948.102;FIC=0.922;LQR=0.017;MQ0=0.000;MQ10=0.735;MQ20=0.794;MQ30=0.945;MENDEL=1;SVM=-0.060774095;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565646	rs146013952	T	C	0.0	SVM	NS=464;AF=0.002;AC=2;s50=1.00;LBS=31,150,53,165,28,173,1756,2108;OBS=4,35,101,276,13,13,27531,63401;STR=0.005;STZ=1.446;CBR=0.011;CBZ=3.385;QBR=-0.023;QBZ=-7.100;MBR=0.083;MSR=0.007;MBZ=24.955;IOR=0.118;IOZ=-22.070;IOH=0.000;IOD=-0.001;AOI=-40.101;AOZ=-18.031;ABE=1.000;ABZ=5.512;BCS=-1184.566;FIC=1.000;LQR=0.043;MQ0=0.000;MQ10=0.823;MQ20=0.857;MQ30=0.964;MENDEL=0;SVM=-0.74676533;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565676	.	C	T	0.0	SVM	NS=456;AF=0.002;AC=2;s50=0.97;LBS=48,9,548,731,4,8,27,21;OBS=7,14,32982,65417,1,3,192,329;STR=-0.005;STZ=-1.621;CBR=0.012;CBZ=3.658;QBR=-0.023;QBZ=-7.144;MBR=0.101;MSR=-0.043;MBZ=31.662;IOR=0.048;IOZ=-22.381;IOH=0.000;IOD=-0.000;AOI=-48.727;AOZ=-26.346;ABE=1.000;ABZ=0.430;BCS=-2018.309;FIC=1.000;LQR=0.013;MQ0=0.000;MQ10=0.791;MQ20=0.834;MQ30=0.956;MENDEL=0;SVM=-1.3263049;AN=912;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565697	rs143799743	A	G	0.0	SVM	NS=434;AF=0.986;AC=849;s50=0.91;LBS=463,428,38,29,2221,4148,27,22;OBS=1535,2674,1,11,26396,33657,5,3;STZ=-0.037;STZ=-9.467;CBZ=0.023;CBZ=5.953;QBZ=0.055;QBZ=13.907;MBR=-0.364;MSR=-0.009;MBZ=-92.326;IOZ=0.055;IOH=-18.545;IOD=0.000;IOD=-0.000;AOZ=-3773.351;AOZ=-3754.806;ABZ=0.154;ABZ=-20.595;BCS=-314939.592;FIC=0.263;LQR=0.102;MQ10=0.000;MQ10=0.664;MQ20=0.713;MQ30=0.920;MENDEL=2;SVM=-0.52352972;AN=868;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565703	.	A	G	0.0	SVM	NS=450;AF=0.004;AC=4;s50=0.96;LBS=901,5732,63,135,28,71,26,37;OBS=32173,45243,3,39,266,407,6,6;STR=0.004;STZ=1.059;CBR=-0.011;CBZ=-3.137;QBR=0.000;QBZ=0.109;MBR=0.124;MSR=-0.013;MBZ=34.660;IOR=0.103;IOZ=-21.657;IOH=0.000;IOD=-0.001;AOI=-56.114;AOZ=-34.457;ABE=1.000;ABZ=3.514;BCS=-3090.863;FIC=1.000;LQR=0.079;MQ0=0.000;MQ10=0.693;MQ20=0.751;MQ30=0.934;MENDEL=0;SVM=-1.2962316;AN=900;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565728	rs146756868	C	A	0.0	SVM	NS=449;AF=0.056;AC=52;s50=0.96;LBS=69,330,325,1084,2,28,4,20;OBS=7217,8425,32928,54118,9,4,6,10;STZ=-0.061;STZ=-19.611;CBZ=-0.017;CBZ=-5.490;QBZ=-0.009;QBZ=-2.814;MBR=0.413;MSR=-0.080;MBZ=132.188;IOZ=0.056;IOH=-22.164;IOD=0.000;IOD=-0.000;AOZ=-839.828;AOZ=-817.664;ABZ=1.000;ABZ=2.830;BCS=-84732.863;FIC=1.000;LQR=0.017;MQ10=0.000;MQ10=0.721;MQ20=0.769;MQ30=0.932;MENDEL=4;SVM=-1.0749687;AN=898;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565787	.	G	A	0.0	SVM	NS=462;AF=0.001;AC=1;s50=0.99;LBS=20,22,27,19,1207,3553,14,14;OBS=19,38,1,4,18061,31565,3,7;STR=0.002;STZ=0.439;CBR=0.005;CBZ=1.139;QBR=-0.015;QBZ=-3.276;MBR=0.029;MSR=-0.057;MBZ=6.493;IOR=0.047;IOZ=-17.540;IOH=0.000;IOD=-0.000;AOI=-20.812;AOZ=-3.272;ABE=0.836;ABZ=13.876;BCS=288.686;FIC=-0.037;LQR=0.088;MQ0=0.000;MQ10=0.839;MQ20=0.872;MQ30=0.965;MENDEL=0;SVM=-0.80066867;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565870	rs148172508	T	C	0.0	SVM	NS=462;AF=1.000;AC=917;s50=0.97;LBS=7,66,508,538,3,19,52,155;OBS=1,41,32701,67679,3,13,681,1157;STR=0.013;STZ=4.060;CBR=-0.001;CBZ=-0.246;QBR=0.071;QBZ=22.679;MBR=-0.648;MSR=-0.032;MBZ=-207.201;IOR=0.118;IOZ=-20.794;IOH=1.000;IOD=0.999;AOI=-5578.549;AOZ=-5557.754;ABE=0.500;ABZ=0.000;BCS=-551069.098;FIC=-nan;LQR=0.012;MQ0=0.000;MQ10=0.953;MQ20=0.967;MQ30=0.988;MENDEL=1;SVM=-0.40112956;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565901	rs142023194	G	A	0.0	SVM	NS=460;AF=1.000;AC=917;s50=0.97;LBS=548,779,66,13,175,84,113,35;OBS=20339,50330,6,1,394,896,13,4;STR=0.005;STZ=1.397;CBR=-0.018;CBZ=-4.942;QBR=0.062;QBZ=16.681;MBR=-0.658;MSR=-0.027;MBZ=-176.455;IOR=0.064;IOZ=-18.683;IOH=1.000;IOD=1.000;AOI=-4397.137;AOZ=-4378.454;ABE=0.500;ABZ=0.000;BCS=-381098.401;FIC=-nan;LQR=0.022;MQ0=0.000;MQ10=0.952;MQ20=0.964;MQ30=0.984;MENDEL=2;SVM=-0.40762048;AN=920;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565916	.	C	A	0.0	SVM	NS=461;AF=0.002;AC=2;s50=0.98;LBS=40,27,895,1214,3,0,26,3;OBS=293,527,26966,59567,1,2,8,12;STR=-0.010;STZ=-2.823;CBR=0.003;CBZ=1.026;QBR=0.015;QBZ=4.415;MBR=0.253;MSR=-0.032;MBZ=74.692;IOR=0.043;IOZ=-22.714;IOH=0.000;IOD=-0.000;AOI=-64.041;AOZ=-41.327;ABE=1.000;ABZ=2.272;BCS=-3819.628;FIC=0.998;LQR=0.024;MQ0=0.000;MQ10=0.939;MQ20=0.956;MQ30=0.983;MENDEL=0;SVM=-1.2621132;AN=922;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565937	rs145759242	T	C	0.0	SVM	NS=459;AF=0.998;AC=912;s50=0.97;LBS=7,9,61,85,1,5,87,189;OBS=2,82,37640,60866,1,3,720,1119;STZ=0.003;STZ=0.828;CBZ=0.003;CBZ=1.011;QBZ=0.127;QBZ=40.209;MBR=-0.650;MSR=-0.004;MBZ=-205.805;IOZ=0.211;IOH=-18.084;IOD=0.000;IOD=-0.001;AOZ=-6284.276;AOZ=-6266.192;ABZ=0.707;ABZ=1.025;BCS=-551506.365;FIC=0.617;LQR=0.004;MQ10=0.000;MQ10=0.957;MQ20=0.969;MQ30=0.989;MENDEL=1;SVM=-0.80801273;AN=918;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565967	rs141756172	G	A	0.0	SVM	NS=462;AF=0.004;AC=4;s50=0.99;LBS=36,33,45,16,1322,1008,14,23;OBS=607,592,4,10,54818,42212,6,3;STR=0.013;STZ=4.076;CBR=0.009;CBZ=2.948;QBR=0.032;QBZ=10.048;MBR=0.340;MSR=0.020;MBZ=106.640;IOR=0.046;IOZ=-21.803;IOH=0.000;IOD=-0.000;AOI=-84.938;AOZ=-63.135;ABE=1.000;ABZ=3.362;BCS=-6086.351;FIC=1.000;LQR=0.024;MQ0=0.000;MQ10=0.934;MQ20=0.951;MQ30=0.984;MENDEL=0;SVM=-1.1122931;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565973	.	A	G	0.0	SVM	NS=461;AF=0.002;AC=2;s50=0.99;LBS=706,1421,46,21,34,37,22,29;OBS=56924,42752,2,8,237,248,4,4;STR=0.012;STZ=3.661;CBR=0.007;CBZ=2.214;QBR=-0.007;QBZ=-2.287;MBR=0.201;MSR=-0.005;MBZ=63.523;IOR=0.034;IOZ=-22.524;IOH=0.000;IOD=-0.000;AOI=-47.034;AOZ=-24.510;ABE=1.000;ABZ=3.333;BCS=-1958.603;FIC=0.999;LQR=0.021;MQ0=0.000;MQ10=0.933;MQ20=0.953;MQ30=0.983;MENDEL=0;SVM=-1.2222364;AN=922;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565976	rs138694460	C	T	0.0	SVM	NS=460;AF=0.999;AC=915;s50=0.98;LBS=17,35,190,1443,11,37,343,468;OBS=2,20,1221,1404,2,12,63118,46185;STZ=-0.034;STZ=-11.503;CBZ=-0.024;CBZ=-7.918;QBZ=0.133;QBZ=44.563;MBR=-0.576;MSR=-0.012;MBZ=-192.836;IOZ=0.079;IOH=-20.438;IOD=0.000;IOD=-0.000;AOZ=-6200.220;AOZ=-6179.782;ABZ=0.568;ABZ=0.553;BCS=-599378.404;FIC=-1.128;LQR=0.021;MQ10=0.000;MQ10=0.944;MQ20=0.960;MQ30=0.985;MENDEL=0;SVM=-0.70066184;AN=920;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565983	.	C	T	0.0	SVM	NS=461;AF=0.001;AC=1;s50=0.99;LBS=14,9,1436,725,2,2,10,14;OBS=13,7,51441,42906,2,2,65,24;STR=-0.011;STZ=-3.476;CBR=0.019;CBZ=5.719;QBR=-0.030;QBZ=-9.137;MBR=0.040;MSR=0.040;MBZ=12.260;IOR=0.045;IOZ=-22.510;IOH=0.000;IOD=-0.000;AOI=-26.477;AOZ=-3.967;ABE=0.863;ABZ=18.608;BCS=519.065;FIC=-0.037;LQR=0.023;MQ0=0.000;MQ10=0.909;MQ20=0.937;MQ30=0.983;MENDEL=0;SVM=-1.0230028;AN=922;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	565987	rs138335084	C	T	0.0	SVM	NS=462;AF=0.004;AC=4;s50=0.99;LBS=49,25,4661,3643,0,5,43,101;OBS=5,45,39575,48303,2,32,400,468;STR=-0.002;STZ=-0.621;CBR=-0.011;CBZ=-3.187;QBR=-0.011;QBZ=-3.381;MBR=0.211;MSR=0.007;MBZ=62.769;IOR=0.136;IOZ=-23.045;IOH=0.000;IOD=-0.001;AOI=-64.331;AOZ=-41.286;ABE=1.000;ABZ=1.460;BCS=-3965.707;FIC=0.999;LQR=0.087;MQ0=0.000;MQ10=0.909;MQ20=0.934;MQ30=0.982;MENDEL=1;SVM=-1.0959803;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	566010	rs143250913	G	A	0.0	SVM	NS=460;AF=0.026;AC=24;s50=0.98;LBS=166,256,97,16,2425,4407,61,20;OBS=2391,4745,9,6,30891,72244,18,5;STZ=-0.019;STZ=-6.329;CBZ=-0.002;CBZ=-0.736;QBZ=0.025;QBZ=8.294;MBR=0.560;MSR=-0.027;MBZ=185.847;IOZ=0.055;IOH=-25.703;IOD=0.000;IOD=-0.000;AOZ=-346.569;AOZ=-320.867;ABZ=0.589;ABZ=4.587;BCS=-36721.131;FIC=0.958;LQR=0.062;MQ10=0.000;MQ10=0.905;MQ20=0.926;MQ30=0.980;MENDEL=2;SVM=-0.69766814;AN=920;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	566021	.	A	G	0.0	SVM	NS=458;AF=0.991;AC=904;s50=0.97;LBS=66,243,38,85,2058,9039,30,31;OBS=959,2153,5,9,36275,96847,1,18;STR=0.012;STZ=4.421;CBR=-0.008;CBZ=-3.073;QBR=-0.017;QBZ=-6.365;MBR=-0.661;MSR=-0.010;MBZ=-243.930;IOR=0.039;IOZ=-28.532;IOH=0.000;IOD=-0.000;AOI=-5439.340;AOZ=-5410.808;ABE=1.000;ABZ=1.999;BCS=-695606.912;FIC=0.817;LQR=0.077;MQ0=0.000;MQ10=0.946;MQ20=0.955;MQ30=0.981;MENDEL=0;SVM=-0.85647332;AN=916;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	566024	.	G	A	0.0	SVM	NS=457;AF=0.996;AC=906;s50=0.97;LBS=2516,5426,174,33,147,134,110,32;OBS=36250,102762,20,9,599,1433,8,6;STR=0.009;STZ=3.476;CBR=0.002;CBZ=0.759;QBR=-0.001;QBZ=-0.369;MBR=-0.637;MSR=-0.012;MBZ=-239.178;IOR=0.048;IOZ=-29.182;IOH=0.000;IOD=-0.000;AOI=-5554.040;AOZ=-5524.858;ABE=0.997;ABZ=1.409;BCS=-735005.143;FIC=0.844;LQR=0.055;MQ0=0.000;MQ10=0.947;MQ20=0.957;MQ30=0.983;MENDEL=0;SVM=-0.77368657;AN=914;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	566048	rs145777875	G	A	0.0	SVM	NS=456;AF=0.997;AC=905;s50=0.96;LBS=496,2616,67,90,267,127,57,86;OBS=31067,65456,12,5,565,1181,3,6;STR=0.001;STZ=0.163;CBR=0.003;CBZ=0.815;QBR=0.005;QBZ=1.452;MBR=-0.714;MSR=0.019;MBZ=-223.728;IOR=0.057;IOZ=-20.698;IOH=0.000;IOD=-0.000;AOI=-5417.114;AOZ=-5396.417;ABE=0.475;ABZ=-0.176;BCS=-525580.539;FIC=0.437;LQR=0.034;MQ0=0.000;MQ10=0.962;MQ20=0.970;MQ30=0.985;MENDEL=2;SVM=-0.39974663;AN=912;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	566130	rs147381188	C	T	0.0	SVM	NS=462;AF=0.999;AC=922;s50=0.99;LBS=10,34,157,611,3,107,171,450;OBS=2,15,773,1211,2,14,48525,60391;STR=-0.015;STZ=-4.963;CBR=-0.015;CBZ=-4.858;QBR=0.116;QBZ=38.588;MBR=-0.435;MSR=0.015;MBZ=-144.751;IOR=0.078;IOZ=-19.749;IOH=0.000;IOD=-0.000;AOI=-6385.363;AOZ=-6365.614;ABE=0.133;ABZ=-9.372;BCS=-603431.242;FIC=-0.022;LQR=0.012;MQ0=0.000;MQ10=0.916;MQ20=0.933;MQ30=0.982;MENDEL=0;SVM=-0.46034897;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	566135	.	G	A	0.0	SVM	NS=462;AF=0.040;AC=38;s50=1.00;LBS=164,355,186,24,1764,1095,111,44;OBS=4009,4990,42,1,36048,41272,33,5;STR=0.013;STZ=3.730;CBR=-0.018;CBZ=-5.202;QBR=0.005;QBZ=1.490;MBR=0.712;MSR=0.020;MBZ=209.264;IOR=0.147;IOZ=-21.642;IOH=0.000;IOD=-0.001;AOI=-498.617;AOZ=-476.976;ABE=1.000;ABZ=2.921;BCS=-47762.642;FIC=1.000;LQR=0.038;MQ0=0.000;MQ10=0.869;MQ20=0.892;MQ30=0.973;MENDEL=1;SVM=-0.69668648;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|)
1	566350	.	A	G	0.0	SVM	NS=463;AF=0.001;AC=1;s50=1.00;LBS=1139,1709,79,43,144,67,81,61;OBS=29879,31569,7,1,56,62,3,3;STR=0.001;STZ=0.250;CBR=0.017;CBZ=4.275;QBR=-0.020;QBZ=-4.897;MBR=0.102;MSR=0.032;MBZ=25.364;IOR=0.045;IOZ=-17.324;IOH=0.000;IOD=-0.000;AOI=-24.744;AOZ=-7.420;ABE=0.694;ABZ=9.196;BCS=41.952;FIC=-0.036;LQR=0.047;MQ0=0.000;MQ10=0.938;MQ20=0.955;MQ30=0.984;MENDEL=1;SVM=-0.38684815;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566371	rs149516726	A	G	0.0	SVM	NS=460;AF=0.995;AC=910;s50=0.97;LBS=214,438,41,41,1148,1321,24,82;OBS=1103,1480,1,8,51908,45258,9,13;STZ=-0.034;STZ=-10.775;CBZ=0.027;CBZ=8.445;QBZ=0.067;QBZ=21.230;MBR=-0.733;MSR=0.027;MBZ=-231.561;IOZ=0.061;IOH=-21.854;IOD=0.000;IOD=-0.000;AOZ=-5169.460;AOZ=-5147.606;ABZ=0.347;ABZ=-2.023;BCS=-518682.892;FIC=0.555;LQR=0.030;MQ10=0.000;MQ10=0.955;MQ20=0.966;MQ30=0.983;MENDEL=2;SVM=-0.70721748;AN=920;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566374	.	G	A	0.0	SVM	NS=460;AF=0.002;AC=2;s50=0.99;LBS=51,153,50,61,2388,3459,24,85;OBS=227,231,2,3,55118,49317,8,12;STR=0.004;STZ=1.376;CBR=-0.001;CBZ=-0.398;QBR=0.005;QBZ=1.710;MBR=0.183;MSR=0.020;MBZ=59.188;IOR=0.045;IOZ=-23.197;IOH=0.199;IOD=0.199;AOI=-45.471;AOZ=-22.274;ABE=1.000;ABZ=3.761;BCS=-1811.133;FIC=1.000;LQR=0.055;MQ0=0.000;MQ10=0.953;MQ20=0.966;MQ30=0.982;MENDEL=0;SVM=-1.2822215;AN=920;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566390	rs144069128	T	C	0.0	SVM	NS=460;AF=0.994;AC=910;s50=0.98;LBS=26,78,482,1800,8,82,169,383;OBS=11,22,55583,58150,2,8,1048,1314;STZ=-0.013;STZ=-4.331;CBZ=-0.007;CBZ=-2.233;QBZ=0.082;QBZ=28.050;MBR=-0.729;MSR=0.002;MBZ=-248.497;IOZ=0.076;IOH=-22.938;IOD=0.000;IOD=-0.000;AOZ=-5753.533;AOZ=-5730.596;ABZ=0.139;ABZ=-10.119;BCS=-619485.182;FIC=0.804;LQR=0.024;MQ10=0.000;MQ10=0.961;MQ20=0.970;MQ30=0.984;MENDEL=2;SVM=-0.62954485;AN=920;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566444	.	A	G	0.0	SVM	NS=456;AF=0.002;AC=2;s50=0.98;LBS=2640,4477,96,22,67,100,63,37;OBS=24907,56588,13,21,290,454,6,7;STR=-0.017;STZ=-4.969;CBR=0.002;CBZ=0.595;QBR=-0.015;QBZ=-4.295;MBR=0.158;MSR=-0.010;MBZ=45.324;IOR=0.086;IOZ=-22.452;IOH=0.006;IOD=0.005;AOI=-59.612;AOZ=-37.160;ABE=0.994;ABZ=0.002;BCS=-3282.447;FIC=1.000;LQR=0.081;MQ0=0.000;MQ10=0.895;MQ20=0.921;MQ30=0.966;MENDEL=1;SVM=-1.2399171;AN=912;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566449	.	C	T	0.0	SVM	NS=457;AF=0.001;AC=1;s50=0.99;LBS=10,12,1026,891,0,5,38,15;OBS=6,10,23361,58157,2,0,26,20;STR=-0.015;STZ=-4.202;CBR=0.006;CBZ=1.817;QBR=-0.019;QBZ=-5.463;MBR=0.029;MSR=-0.015;MBZ=8.186;IOR=0.044;IOZ=-19.920;IOH=0.000;IOD=-0.000;AOI=-22.072;AOZ=-2.152;ABE=0.954;ABZ=0.079;BCS=440.803;FIC=1.000;LQR=0.024;MQ0=0.000;MQ10=0.900;MQ20=0.924;MQ30=0.969;MENDEL=0;SVM=-1.3378153;AN=914;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566573	rs143522810	A	G	0.0	SVM	NS=457;AF=0.994;AC=896;s50=0.95;LBS=494,1281,63,119,124,629,30,193;OBS=773,1078,3,8,19686,17736,2,11;STZ=-0.046;STZ=-9.115;CBZ=0.008;CBZ=1.682;QBZ=0.173;QBZ=34.329;MBR=-0.725;MSR=0.074;MBZ=-143.689;IOZ=0.133;IOH=-12.493;IOD=0.000;IOD=-0.001;AOZ=-3460.794;AOZ=-3448.301;ABZ=0.201;ABZ=-19.974;BCS=-198969.189;FIC=-2.177;LQR=0.060;MQ10=0.000;MQ10=0.922;MQ20=0.943;MQ30=0.978;MENDEL=1;SVM=-0.64631135;AN=914;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566636	.	T	C	0.0	SVM	NS=464;AF=0.002;AC=2;s50=1.00;LBS=18,146,28,285,4,129,693,9919;OBS=1,12,177,349,1,47,32674,51827;STR=0.008;STZ=2.343;CBR=0.003;CBZ=0.794;QBR=-0.014;QBZ=-4.007;MBR=0.135;MSR=0.039;MBZ=39.295;IOR=0.093;IOZ=-24.341;IOH=0.598;IOD=0.597;AOI=-47.888;AOZ=-23.547;ABE=0.626;ABZ=0.000;BCS=-2012.299;FIC=1.000;LQR=0.114;MQ0=0.000;MQ10=0.899;MQ20=0.919;MQ30=0.975;MENDEL=0;SVM=-0.47819147;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566771	rs146545403	C	T	0.0	SVM	NS=464;AF=0.991;AC=913;s50=0.99;LBS=12,12,133,263,10,13,205,3444;OBS=20,12,1086,2169,16,6,36219,79943;STZ=0.008;STZ=2.658;CBZ=-0.032;CBZ=-11.099;QBZ=0.051;QBZ=17.521;MBR=-0.767;MSR=-0.002;MBZ=-265.050;IOZ=0.100;IOH=-22.061;IOD=0.000;IOD=-0.000;AOZ=-6089.966;AOZ=-6067.905;ABZ=0.128;ABZ=-22.929;BCS=-637419.414;FIC=0.538;LQR=0.033;MQ10=0.000;MQ10=0.961;MQ20=0.972;MQ30=0.986;MENDEL=1;SVM=-0.72525706;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566792	rs140024420	T	C	0.0	SVM	NS=458;AF=0.995;AC=893;s50=0.94;LBS=44,16,1018,884,35,19,328,176;OBS=3,5,17368,47638,2,1,541,1022;STR=0.027;STZ=6.966;CBR=-0.037;CBZ=-9.652;QBR=0.020;QBZ=5.096;MBR=-0.750;MSR=-0.008;MBZ=-193.383;IOR=0.033;IOZ=-17.996;IOH=0.000;IOD=-0.000;AOI=-4205.945;AOZ=-4187.949;ABE=0.157;ABZ=-22.373;BCS=-345450.219;FIC=-0.432;LQR=0.035;MQ0=0.000;MQ10=0.959;MQ20=0.969;MQ30=0.982;MENDEL=3;SVM=-0.60133999;AN=916;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566816	rs151278223	C	A	0.0	SVM	NS=457;AF=0.999;AC=899;s50=0.95;LBS=501,788,174,256,25,48,42,41;OBS=21105,22705,587,650,1,7,3,5;STR=-0.002;STZ=-0.499;CBR=-0.010;CBZ=-2.084;QBR=0.128;QBZ=27.099;MBR=-0.654;MSR=-0.008;MBZ=-138.750;IOR=0.075;IOZ=-14.051;IOH=0.000;IOD=-0.000;AOI=-3619.294;AOZ=-3605.244;ABE=0.153;ABZ=-9.566;BCS=-236917.705;FIC=-0.640;LQR=0.037;MQ0=0.000;MQ10=0.925;MQ20=0.948;MQ30=0.977;MENDEL=0;SVM=-0.23331983;AN=914;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566822	.	A	G	0.0	SVM	NS=461;AF=0.002;AC=2;s50=0.99;LBS=504,753,16,9,13,25,8,16;OBS=23245,17552,1,1,114,84,1,1;STR=-0.001;STZ=-0.159;CBR=-0.003;CBZ=-0.681;QBR=0.012;QBZ=2.449;MBR=0.093;MSR=0.013;MBZ=18.886;IOR=0.020;IOZ=-14.128;IOH=0.003;IOD=0.002;AOI=-30.215;AOZ=-16.087;ABE=0.997;ABZ=0.004;BCS=-802.017;FIC=1.000;LQR=0.031;MQ0=0.000;MQ10=0.852;MQ20=0.895;MQ30=0.971;MENDEL=0;SVM=-1.2021561;AN=922;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566834	.	A	G	0.0	SVM	NS=451;AF=0.013;AC=10;s50=0.97;LBS=1583,433,187,7,99,64,27,5;OBS=23532,35278,14,20,1886,2047,31,7;STR=-0.039;STZ=-9.821;CBR=0.003;CBZ=0.830;QBR=0.056;QBZ=14.086;MBR=0.347;MSR=-0.028;MBZ=86.920;IOR=0.163;IOZ=-19.218;IOH=0.006;IOD=0.005;AOI=-252.707;AOZ=-233.489;ABE=0.135;ABZ=-0.001;BCS=-20483.684;FIC=1.000;LQR=0.034;MQ0=0.000;MQ10=0.838;MQ20=0.881;MQ30=0.965;MENDEL=0;SVM=-0.83697826;AN=902;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566849	rs140536240	G	A	0.0	SVM	NS=422;AF=0.999;AC=839;s50=0.90;LBS=472,517,72,20,549,139,96,14;OBS=24279,38244,9,8,904,1052,25,4;STZ=0.026;STZ=6.595;CBZ=-0.016;CBZ=-4.064;QBZ=0.142;QBZ=36.168;MBR=-0.363;MSR=-0.026;MBZ=-92.087;IOZ=0.161;IOH=-15.441;IOD=0.003;IOD=0.002;AOZ=-4667.012;AOZ=-4651.571;ABZ=0.156;ABZ=-13.793;BCS=-344514.228;FIC=-2.871;LQR=0.025;MQ10=0.000;MQ10=0.793;MQ20=0.842;MQ30=0.958;MENDEL=0;SVM=-0.57448668;AN=844;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566858	.	C	T	0.0	SVM	NS=457;AF=0.019;AC=18;s50=0.99;LBS=2,29,286,1092,6,33,159,104;OBS=1,2,22910,33404,0,3,1848,3075;STR=0.017;STZ=4.308;CBR=0.006;CBZ=1.561;QBR=-0.021;QBZ=-5.157;MBR=0.434;MSR=-0.002;MBZ=107.453;IOR=0.020;IOZ=-17.232;IOH=0.000;IOD=0.000;AOI=-348.378;AOZ=-331.146;ABE=1.000;ABZ=0.230;BCS=-26005.085;FIC=1.000;LQR=0.026;MQ0=0.000;MQ10=0.780;MQ20=0.833;MQ30=0.963;MENDEL=4;SVM=-1.0414096;AN=914;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566916	rs145370722	A	G	0.0	SVM	NS=464;AF=0.994;AC=917;s50=0.99;LBS=540,1809,154,208,2057,1652,94,246;OBS=1073,2339,13,18,34182,75724,2,23;STZ=0.001;STZ=0.437;CBZ=0.000;CBZ=0.042;QBZ=0.060;QBZ=20.155;MBR=-0.753;MSR=0.008;MBZ=-253.559;IOZ=0.087;IOH=-24.227;IOD=0.000;IOD=-0.000;AOZ=-5274.548;AOZ=-5250.320;ABZ=0.121;ABZ=-12.261;BCS=-586381.480;FIC=0.972;LQR=0.051;MQ10=0.000;MQ10=0.959;MQ20=0.970;MQ30=0.986;MENDEL=0;SVM=-0.45888626;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566933	rs142636660	A	G	0.0	SVM	NS=464;AF=0.996;AC=919;s50=0.99;LBS=148,566,20,31,396,3173,19,46;OBS=816,1771,3,8,32324,55913,2,7;STR=-0.018;STZ=-5.295;CBR=-0.029;CBZ=-8.775;QBR=0.053;QBZ=16.024;MBR=-0.758;MSR=0.023;MBZ=-228.354;IOR=0.047;IOZ=-20.102;IOH=0.000;IOD=-0.000;AOI=-5103.406;AOZ=-5083.304;ABE=0.105;ABZ=-15.453;BCS=-479501.499;FIC=0.998;LQR=0.045;MQ0=0.000;MQ10=0.951;MQ20=0.965;MQ30=0.981;MENDEL=1;SVM=-0.70581571;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	566960	rs146905624	T	C	0.0	SVM	NS=464;AF=1.000;AC=928;s50=1.00;LBS=22,20,72,135,8,13,207,261;OBS=2,4,39108,50545,1,0,716,1126;STR=-0.013;STZ=-4.067;CBR=0.007;CBZ=2.015;QBR=0.172;QBZ=51.887;MBR=-0.693;MSR=-0.003;MBZ=-209.525;IOR=0.023;IOZ=-17.198;IOH=1.000;IOD=1.000;AOI=-6046.717;AOZ=-6029.519;ABE=0.500;ABZ=0.000;BCS=-502537.537;FIC=-nan;LQR=0.007;MQ0=0.000;MQ10=0.961;MQ20=0.975;MQ30=0.990;MENDEL=0;SVM=-0.48829737;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567002	rs138612401	T	C	0.0	SVM	NS=462;AF=0.999;AC=920;s50=0.99;LBS=39,4,402,206,14,1,417,194;OBS=1,7,29901,75264,3,1,1059,1954;STR=0.024;STZ=8.048;CBR=-0.027;CBZ=-8.890;QBR=0.084;QBZ=27.625;MBR=-0.493;MSR=0.038;MBZ=-162.235;IOR=0.028;IOZ=-20.499;IOH=0.000;IOD=-0.000;AOI=-5958.895;AOZ=-5938.396;ABE=0.151;ABZ=-17.737;BCS=-573129.505;FIC=-4.178;LQR=0.011;MQ0=0.000;MQ10=0.899;MQ20=0.917;MQ30=0.980;MENDEL=1;SVM=-0.54564905;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567023	.	C	T	0.0	SVM	NS=448;AF=0.208;AC=190;s50=0.97;LBS=12,10,166,334,14,12,763,727;OBS=2,6,8255,24907,0,3,7372,22085;STR=-0.002;STZ=-0.385;CBR=-0.027;CBZ=-6.811;QBR=-0.097;QBZ=-24.283;MBR=0.705;MSR=0.020;MBZ=176.430;IOR=0.036;IOZ=-17.232;IOH=0.000;IOD=-0.000;AOI=-1999.729;AOZ=-1982.497;ABE=1.000;ABZ=0.343;BCS=-157763.681;FIC=1.000;LQR=0.031;MQ0=0.000;MQ10=0.508;MQ20=0.577;MQ30=0.885;MENDEL=21;SVM=-0.8639475;AN=896;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567033	rs142707378	T	C	0.0	SVM	NS=428;AF=0.987;AC=819;s50=0.86;LBS=11,11,206,353,4,7,63,512;OBS=13,15,12896,40744,7,5,401,1384;STZ=-0.006;STZ=-1.521;CBZ=-0.005;CBZ=-1.267;QBZ=0.101;QBZ=23.756;MBR=-0.316;MSR=0.029;MBZ=-74.376;IOZ=0.169;IOH=-14.048;IOD=0.034;IOD=0.034;AOZ=-4422.806;AOZ=-4408.757;ABZ=0.208;ABZ=-21.820;BCS=-295233.674;FIC=0.169;LQR=0.020;MQ10=0.000;MQ10=0.682;MQ20=0.731;MQ30=0.910;MENDEL=2;SVM=-0.29593949;AN=856;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567038	.	T	C	0.0	SVM	NS=441;AF=0.004;AC=4;s50=0.95;LBS=27,21,51,59,6,24,472,454;OBS=12,19,786,2279,2,15,10939,35943;STR=-0.013;STZ=-2.935;CBR=0.022;CBZ=4.845;QBR=0.012;QBZ=2.769;MBR=0.289;MSR=0.062;MBZ=64.693;IOR=0.176;IOZ=-14.946;IOH=0.001;IOD=-0.000;AOI=-249.268;AOZ=-234.322;ABE=0.999;ABZ=0.020;BCS=-16668.781;FIC=1.000;LQR=0.020;MQ0=0.000;MQ10=0.623;MQ20=0.687;MQ30=0.897;MENDEL=0;SVM=-1.1706168;AN=882;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567041	.	C	A	0.0	SVM	NS=455;AF=0.002;AC=2;s50=0.98;LBS=35,50,366,286,8,4,24,9;OBS=220,633,12381,40735,0,2,3,12;STR=-0.007;STZ=-1.720;CBR=0.016;CBZ=3.654;QBR=-0.031;QBZ=-7.279;MBR=0.145;MSR=0.056;MBZ=33.715;IOR=0.066;IOZ=-15.545;IOH=0.019;IOD=0.018;AOI=-78.497;AOZ=-62.951;ABE=0.982;ABZ=0.001;BCS=-4225.283;FIC=1.000;LQR=0.013;MQ0=0.000;MQ10=0.683;MQ20=0.741;MQ30=0.924;MENDEL=1;SVM=-1.1061072;AN=910;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567055	.	T	C	0.0	SVM	NS=458;AF=0.001;AC=1;s50=0.99;LBS=22,19,33,20,15,57,656,939;OBS=2,15,20,78,7,15,9939,24436;STR=0.010;STZ=1.799;CBR=0.042;CBZ=7.854;QBR=-0.050;QBZ=-9.341;MBR=0.056;MSR=0.063;MBZ=10.454;IOR=0.158;IOZ=-14.411;IOH=0.000;IOD=-0.001;AOI=-20.678;AOZ=-6.266;ABE=0.850;ABZ=16.898;BCS=83.274;FIC=-1.076;LQR=0.046;MQ0=0.000;MQ10=0.752;MQ20=0.807;MQ30=0.953;MENDEL=0;SVM=-0.6616554;AN=916;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567062	rs143484473	C	T	0.0	SVM	NS=430;AF=0.992;AC=800;s50=0.81;LBS=22,70,156,176,12,53,340,749;OBS=23,54,319,1311,21,24,10796,21982;STZ=-0.061;STZ=-11.251;CBZ=-0.050;CBZ=-9.294;QBZ=0.125;QBZ=23.125;MBR=-0.612;MSR=0.012;MBZ=-113.472;IOZ=0.432;IOH=-12.612;IOD=0.016;IOD=0.012;AOZ=-2977.386;AOZ=-2964.774;ABZ=0.190;ABZ=-29.408;BCS=-173897.250;FIC=-2.399;LQR=0.040;MQ10=0.000;MQ10=0.881;MQ20=0.914;MQ30=0.957;MENDEL=2;SVM=-0.89824934;AN=860;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567074	.	T	C	0.0	SVM	NS=463;AF=0.002;AC=2;s50=1.00;LBS=4,14,22,25,9,24,534,839;OBS=0,54,264,416,3,10,19256,30001;STR=0.001;STZ=0.134;CBR=0.019;CBZ=4.266;QBR=0.023;QBZ=5.214;MBR=0.258;MSR=0.042;MBZ=57.682;IOR=0.187;IOZ=-17.052;IOH=0.000;IOD=-0.001;AOI=-60.678;AOZ=-43.626;ABE=1.000;ABZ=0.026;BCS=-3307.821;FIC=1.000;LQR=0.028;MQ0=0.000;MQ10=0.906;MQ20=0.932;MQ30=0.969;MENDEL=1;SVM=-0.92066005;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567092	rs148002581	T	C	0.0	SVM	NS=462;AF=0.995;AC=915;s50=0.98;LBS=41,148,484,1651,23,144,170,673;OBS=4,16,28931,35423,1,13,697,1085;STZ=-0.019;STZ=-4.889;CBZ=0.024;CBZ=6.128;QBZ=0.099;QBZ=25.420;MBR=-0.700;MSR=0.019;MBZ=-180.137;IOZ=0.104;IOH=-17.148;IOD=0.005;IOD=0.004;AOZ=-4353.162;AOZ=-4336.014;ABZ=0.151;ABZ=-12.246;BCS=-350201.801;FIC=0.584;LQR=0.043;MQ10=0.000;MQ10=0.943;MQ20=0.959;MQ30=0.982;MENDEL=1;SVM=-0.49367276;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567116	.	C	T	0.0	SVM	NS=460;AF=0.021;AC=20;s50=0.99;LBS=70,13,1408,557,29,4,181,83;OBS=3,7,23882,39463,0,3,1843,2724;STR=-0.014;STZ=-3.573;CBR=0.007;CBZ=1.933;QBR=-0.034;QBZ=-8.769;MBR=0.564;MSR=-0.034;MBZ=147.019;IOR=0.036;IOZ=-18.757;IOH=0.004;IOD=0.004;AOI=-300.841;AOZ=-282.084;ABE=0.996;ABZ=0.002;BCS=-23978.419;FIC=1.000;LQR=0.032;MQ0=0.000;MQ10=0.889;MQ20=0.914;MQ30=0.968;MENDEL=0;SVM=-0.86224931;AN=920;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567119	rs141701738	A	C	0.0	SVM	NS=460;AF=0.994;AC=905;s50=0.97;LBS=639,202,1463,624,55,31,126,28;OBS=1089,1301,24424,40398,18,3,28,11;STZ=0.030;STZ=7.805;CBZ=0.015;CBZ=3.848;QBZ=0.098;QBZ=25.449;MBR=-0.579;MSR=-0.035;MBZ=-150.143;IOZ=0.150;IOH=-18.417;IOD=0.000;IOD=-0.001;AOZ=-4074.486;AOZ=-4056.068;ABZ=0.156;ABZ=-22.307;BCS=-341455.985;FIC=-0.159;LQR=0.042;MQ10=0.000;MQ10=0.907;MQ20=0.928;MQ30=0.969;MENDEL=1;SVM=-0.5731785;AN=920;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567170	.	T	C	0.0	SVM	NS=464;AF=0.002;AC=2;s50=1.00;LBS=10,30,28,57,1,42,522,2116;OBS=0,17,85,230,1,11,16495,41742;STR=0.002;STZ=0.499;CBR=0.005;CBZ=1.156;QBR=-0.035;QBZ=-8.376;MBR=0.092;MSR=-0.024;MBZ=22.291;IOR=0.076;IOZ=-18.750;IOH=0.023;IOD=0.023;AOI=-37.291;AOZ=-18.541;ABE=0.977;ABZ=0.000;BCS=-1009.678;FIC=1.000;LQR=0.044;MQ0=0.000;MQ10=0.844;MQ20=0.874;MQ30=0.959;MENDEL=0;SVM=-0.38887293;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567191	rs139593516	C	T	0.0	SVM	NS=459;AF=0.994;AC=906;s50=0.97;LBS=33,27,252,194,34,34,348,310;OBS=4,33,646,2122,1,9,17186,48810;STZ=-0.012;STZ=-3.168;CBZ=-0.077;CBZ=-20.081;QBZ=0.149;QBZ=38.942;MBR=-0.690;MSR=-0.004;MBZ=-180.998;IOZ=0.137;IOH=-17.209;IOD=0.000;IOD=-0.001;AOZ=-4436.127;AOZ=-4418.918;ABZ=0.155;ABZ=-28.914;BCS=-353034.905;FIC=-0.958;LQR=0.016;MQ10=0.000;MQ10=0.919;MQ20=0.945;MQ30=0.979;MENDEL=1;SVM=-0.78843522;AN=918;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567242	.	G	A	0.0	SVM	NS=452;AF=0.003;AC=1;s50=0.97;LBS=53,226,11,36,98,479,10,52;OBS=1114,1589,2,1,4936,5423,7,5;STR=0.052;STZ=5.974;CBR=-0.096;CBZ=-10.924;QBR=-0.104;QBZ=-11.907;MBR=-0.207;MSR=-0.077;MBZ=-23.625;IOR=0.138;IOZ=-9.704;IOH=0.001;IOD=0.000;AOI=-331.167;AOZ=-321.463;ABE=0.745;ABZ=65.067;BCS=-5017.103;FIC=-120.099;LQR=0.062;MQ0=0.000;MQ10=0.598;MQ20=0.826;MQ30=0.950;MENDEL=0;SVM=-0.9104391;AN=904;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567270	.	T	C	0.0	SVM	NS=457;AF=0.002;AC=2;s50=0.99;LBS=16,79,50,112,21,108,1161,1516;OBS=6,10,614,754,15,11,30159,39043;STR=-0.004;STZ=-0.965;CBR=-0.007;CBZ=-1.971;QBR=0.017;QBZ=4.649;MBR=0.140;MSR=0.011;MBZ=37.128;IOR=0.096;IOZ=-19.944;IOH=0.156;IOD=0.155;AOI=-98.002;AOZ=-78.058;ABE=0.865;ABZ=0.000;BCS=-6897.742;FIC=1.000;LQR=0.039;MQ0=0.000;MQ10=0.743;MQ20=0.794;MQ30=0.950;MENDEL=1;SVM=-1.1284588;AN=914;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567327	.	T	C	0.0	SVM	NS=458;AF=0.002;AC=2;s50=0.99;LBS=18,36,31,454,13,81,799,3772;OBS=7,9,856,1431,4,16,19100,28468;STR=0.012;STZ=2.593;CBR=-0.004;CBZ=-0.897;QBR=0.054;QBZ=12.132;MBR=0.222;MSR=0.020;MBZ=49.533;IOR=0.110;IOZ=-17.042;IOH=0.000;IOD=-0.001;AOI=-171.084;AOZ=-154.042;ABE=1.000;ABZ=0.067;BCS=-12050.126;FIC=1.000;LQR=0.092;MQ0=0.000;MQ10=0.736;MQ20=0.780;MQ30=0.945;MENDEL=0;SVM=-0.8528655;AN=916;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567486	rs150590600	T	C	0.0	SVM	NS=457;AF=0.971;AC=869;s50=0.94;LBS=9,9,284,380,9,8,125,62;OBS=17,9,31212,52766,11,2,1127,2047;STR=-0.006;STZ=-1.895;CBR=-0.005;CBZ=-1.345;QBR=0.070;QBZ=20.806;MBR=-0.786;MSR=0.017;MBZ=-231.912;IOR=0.098;IOZ=-18.929;IOH=0.000;IOD=-0.000;AOI=-5137.856;AOZ=-5118.928;ABE=0.146;ABZ=-24.856;BCS=-457417.292;FIC=0.744;LQR=0.010;MQ0=0.000;MQ10=0.948;MQ20=0.962;MQ30=0.975;MENDEL=2;SVM=-0.61290511;AN=914;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567489	rs139609405	T	C	0.0	SVM	NS=457;AF=0.971;AC=869;s50=0.94;LBS=15,4,447,511,5,7,68,46;OBS=3,6,30828,52547,1,4,849,1804;STR=-0.018;STZ=-5.223;CBR=0.023;CBZ=6.870;QBR=0.016;QBZ=4.580;MBR=-0.802;MSR=0.022;MBZ=-235.376;IOR=0.038;IOZ=-18.964;IOH=0.000;IOD=-0.000;AOI=-5111.098;AOZ=-5092.135;ABE=0.146;ABZ=-19.844;BCS=-450205.171;FIC=0.816;LQR=0.012;MQ0=0.000;MQ10=0.953;MQ20=0.964;MQ30=0.976;MENDEL=2;SVM=-0.64048577;AN=914;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567579	rs140006168	C	T	0.0	SVM	NS=36;AF=0.075;AC=2;s50=0.08;LBS=5,5,25,22,4,4,1969,2847;OBS=5,14,970,1682,11,12,60439,90031;STR=-0.010;STZ=-3.735;CBR=0.002;CBZ=0.735;QBR=-0.020;QBZ=-7.782;MBR=0.182;MSR=-0.023;MBZ=71.215;IOR=0.054;IOZ=-27.150;IOH=0.000;IOD=-0.000;AOI=-6440.751;AOZ=-6413.601;ABE=1.000;ABZ=3.182;BCS=-822375.951;FIC=1.000;LQR=0.031;MQ0=0.000;MQ10=0.190;MQ20=0.327;MQ30=0.822;MENDEL=0;SVM=-1.1138967;AN=72;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567631	.	T	C	0.0	SVM	NS=464;AF=0.001;AC=1;s50=1.00;LBS=3,73,4,41,3,59,283,1180;OBS=0,2,25,35,0,9,8854,12165;STR=0.000;STZ=0.051;CBR=0.010;CBZ=1.381;QBR=-0.003;QBZ=-0.400;MBR=0.091;MSR=-0.009;MBZ=13.225;IOR=0.079;IOZ=-11.384;IOH=0.000;IOD=-0.001;AOI=-16.934;AOZ=-5.549;ABE=0.851;ABZ=18.561;BCS=53.957;FIC=-0.037;LQR=0.067;MQ0=0.000;MQ10=0.826;MQ20=0.864;MQ30=0.969;MENDEL=1;SVM=-0.28098927;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567697	rs148529803	G	A	0.0	SVM	NS=462;AF=0.998;AC=922;s50=1.00;LBS=87,139,16,12,285,112,12,6;OBS=45336,68449,2,24,731,1147,0,5;STZ=-0.002;STZ=-0.802;CBZ=-0.008;CBZ=-2.773;QBZ=0.067;QBZ=22.783;MBR=-0.645;MSR=0.003;MBZ=-219.297;IOZ=0.079;IOH=-19.016;IOD=0.007;IOD=0.006;AOZ=-6913.096;AOZ=-6894.080;ABZ=0.061;ABZ=-0.001;BCS=-640686.156;FIC=1.000;LQR=0.005;MQ10=0.000;MQ10=0.969;MQ20=0.975;MQ30=0.992;MENDEL=0;SVM=-0.6162521;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567726	.	T	C	0.0	SVM	NS=463;AF=0.004;AC=4;s50=1.00;LBS=10,22,19,34,5,24,510,663;OBS=2,15,411,727,0,3,18138,34059;STR=-0.004;STZ=-0.967;CBR=0.013;CBZ=2.950;QBR=0.022;QBZ=5.135;MBR=0.260;MSR=0.000;MBZ=60.063;IOR=0.075;IOZ=-15.736;IOH=0.000;IOD=-0.000;AOI=-98.583;AOZ=-82.848;ABE=1.000;ABZ=0.038;BCS=-5976.868;FIC=1.000;LQR=0.022;MQ0=0.000;MQ10=0.751;MQ20=0.798;MQ30=0.967;MENDEL=1;SVM=-0.79938233;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567783	rs142895724	T	C	0.0	SVM	NS=441;AF=0.998;AC=878;s50=0.94;LBS=26,3,2213,443,8,23,133,25;OBS=2,7,27709,42205,0,2,511,766;STR=0.001;STZ=0.283;CBR=-0.005;CBZ=-1.435;QBR=0.012;QBZ=3.284;MBR=-0.566;MSR=0.003;MBZ=-151.061;IOR=0.028;IOZ=-19.471;IOH=0.000;IOD=-0.000;AOI=-4183.929;AOZ=-4164.458;ABE=0.142;ABZ=-6.741;BCS=-372559.903;FIC=0.497;LQR=0.038;MQ0=0.000;MQ10=0.938;MQ20=0.952;MQ30=0.982;MENDEL=0;SVM=-0.23000215;AN=882;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567792	.	A	G	0.0	SVM	NS=446;AF=0.002;AC=2;s50=0.96;LBS=1389,2005,55,31,167,176,38,33;OBS=38289,56221,17,9,1708,2723,8,9;STR=0.008;STZ=2.604;CBR=0.008;CBZ=2.558;QBR=-0.027;QBZ=-8.501;MBR=0.590;MSR=0.004;MBZ=185.484;IOR=0.082;IOZ=-22.018;IOH=0.997;IOD=0.996;AOI=-253.470;AOZ=-231.452;ABE=0.501;ABZ=0.000;BCS=-22914.498;FIC=1.000;LQR=0.036;MQ0=0.000;MQ10=0.922;MQ20=0.937;MQ30=0.978;MENDEL=0;SVM=-1.2553925;AN=892;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567807	rs151077676	T	C	0.0	SVM	NS=446;AF=0.988;AC=880;s50=0.95;LBS=7,12,135,1368,5,11,107,199;OBS=2,4,55663,89898,0,1,1683,2781;STZ=-0.002;STZ=-0.726;CBZ=-0.001;CBZ=-0.545;QBZ=0.107;QBZ=41.603;MBR=-0.625;MSR=0.003;MBZ=-241.935;IOZ=0.013;IOH=-23.356;IOD=0.006;IOD=0.006;AOZ=-7241.327;AOZ=-7217.971;ABZ=0.074;ABZ=-0.001;BCS=-812799.029;FIC=1.000;LQR=0.012;MQ10=0.000;MQ10=0.931;MQ20=0.947;MQ30=0.979;MENDEL=2;SVM=-0.78724046;AN=892;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567867	rs142547273	A	G	0.0	SVM	NS=452;AF=1.000;AC=902;s50=0.95;LBS=54,128,4,8,24,88,8,16;OBS=417,591,1,1,16729,21726,3,2;STR=-0.007;STZ=-1.344;CBR=-0.018;CBZ=-3.556;QBR=0.152;QBZ=30.293;MBR=-0.621;MSR=0.040;MBZ=-123.432;IOR=0.052;IOZ=-11.302;IOH=1.000;IOD=1.000;AOI=-3946.292;AOZ=-3934.990;ABE=0.500;ABZ=0.000;BCS=-214981.124;FIC=-nan;LQR=0.007;MQ0=0.000;MQ10=0.946;MQ20=0.963;MQ30=0.986;MENDEL=0;SVM=-0.42982063;AN=904;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	567954	.	A	G	0.0	SVM	NS=446;AF=0.002;AC=2;s50=0.96;LBS=4728,3502,345,107,461,1017,42,13;OBS=26165,40735,69,62,2342,2852,30,10;STR=-0.032;STZ=-8.493;CBR=0.011;CBZ=2.947;QBR=-0.100;QBZ=-26.835;MBR=0.187;MSR=-0.069;MBZ=50.284;IOR=0.263;IOZ=-21.765;IOH=0.000;IOD=-0.002;AOI=-289.450;AOZ=-267.684;ABE=1.000;ABZ=0.207;BCS=-25493.674;FIC=1.000;LQR=0.119;MQ0=0.000;MQ10=0.639;MQ20=0.706;MQ30=0.931;MENDEL=0;SVM=-1.0415171;AN=892;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568052	.	T	C	0.0	SVM	NS=462;AF=0.001;AC=1;s50=0.99;LBS=62,112,84,163,28,34,1540,3758;OBS=30,32,80,155,20,13,20627,42903;STR=-0.002;STZ=-0.538;CBR=0.010;CBZ=2.631;QBR=0.000;QBZ=0.031;MBR=0.066;MSR=0.013;MBZ=16.641;IOR=0.149;IOZ=-23.272;IOH=0.000;IOD=-0.001;AOI=-32.576;AOZ=-9.304;ABE=0.628;ABZ=8.145;BCS=-366.123;FIC=-1.072;LQR=0.080;MQ0=0.000;MQ10=0.849;MQ20=0.879;MQ30=0.966;MENDEL=1;SVM=-0.0916027;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568072	rs147963388	A	G	0.0	SVM	NS=462;AF=0.983;AC=895;s50=0.96;LBS=206,745,15,91,122,280,17,112;OBS=1662,2433,2,18,29112,40931,2,19;STZ=-0.005;STZ=-1.231;CBZ=0.000;CBZ=0.052;QBZ=0.159;QBZ=43.215;MBR=-0.822;MSR=0.002;MBZ=-223.875;IOZ=0.136;IOH=-16.104;IOD=0.000;IOD=-0.001;AOZ=-5025.103;AOZ=-5008.999;ABZ=0.153;ABZ=-16.942;BCS=-382152.505;FIC=0.682;LQR=0.018;MQ10=0.000;MQ10=0.932;MQ20=0.950;MQ30=0.979;MENDEL=4;SVM=-0.72370393;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568151	rs140708775	G	A	0.0	SVM	NS=451;AF=0.004;AC=4;s50=0.97;LBS=239,577,75,188,2652,3781,65,191;OBS=3143,2585,2,2,27925,27008,24,19;STR=-0.024;STZ=-5.815;CBR=-0.003;CBZ=-0.641;QBR=0.042;QBZ=10.455;MBR=0.423;MSR=-0.008;MBZ=104.234;IOR=0.091;IOZ=-21.634;IOH=0.000;IOD=-0.001;AOI=-326.970;AOZ=-305.335;ABE=0.997;ABZ=0.060;BCS=-29502.839;FIC=1.000;LQR=0.107;MQ0=0.000;MQ10=0.815;MQ20=0.855;MQ30=0.964;MENDEL=0;SVM=-0.9862025;AN=902;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568175	.	T	A	0.0	SVM	NS=463;AF=0.002;AC=2;s50=0.99;LBS=40,41,32,21,26,23,813,626;OBS=169,194,6,18,10,1,23256,36624;STR=-0.012;STZ=-3.015;CBR=-0.006;CBZ=-1.536;QBR=-0.025;QBZ=-6.197;MBR=0.159;MSR=-0.029;MBZ=39.104;IOR=0.094;IOZ=-18.370;IOH=0.003;IOD=0.002;AOI=-40.119;AOZ=-21.749;ABE=0.997;ABZ=0.003;BCS=-1468.441;FIC=1.000;LQR=0.025;MQ0=0.000;MQ10=0.874;MQ20=0.902;MQ30=0.974;MENDEL=1;SVM=-1.0082488;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568201	rs150293476	T	C	0.0	SVM	NS=456;AF=0.998;AC=905;s50=0.97;LBS=7,3,97,80,1,4,117,98;OBS=8,85,39238,71305,4,23,956,1694;STR=0.002;STZ=0.622;CBR=-0.010;CBZ=-3.495;QBR=0.138;QBZ=46.563;MBR=-0.676;MSR=0.005;MBZ=-227.282;IOR=0.250;IOZ=-18.835;IOH=0.000;IOD=-0.001;AOI=-6677.887;AOZ=-6659.052;ABE=0.133;ABZ=-15.509;BCS=-617570.651;FIC=0.350;LQR=0.003;MQ0=0.000;MQ10=0.953;MQ20=0.966;MQ30=0.989;MENDEL=0;SVM=-0.71196171;AN=912;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568226	.	C	T	0.0	SVM	NS=463;AF=0.001;AC=1;s50=1.00;LBS=22,13,556,766,6,4,26,14;OBS=2,6,27277,65164,2,0,56,75;STR=-0.011;STZ=-3.346;CBR=0.009;CBZ=2.760;QBR=-0.014;QBZ=-4.250;MBR=0.056;MSR=0.007;MBZ=17.068;IOR=0.020;IOZ=-22.466;IOH=0.000;IOD=-0.000;AOI=-28.977;AOZ=-6.512;ABE=0.733;ABZ=12.544;BCS=304.259;FIC=-0.036;LQR=0.014;MQ0=0.000;MQ10=0.879;MQ20=0.906;MQ30=0.976;MENDEL=1;SVM=-0.60724173;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568248	.	G	A	0.0	SVM	NS=460;AF=0.025;AC=20;s50=0.99;LBS=238,127,126,4,2405,552,284,8;OBS=1818,3690,6,3,26675,62141,13,1;STR=-0.015;STZ=-4.667;CBR=-0.017;CBZ=-5.078;QBR=-0.060;QBZ=-18.325;MBR=0.469;MSR=-0.002;MBZ=143.956;IOR=0.049;IOZ=-21.171;IOH=0.052;IOD=0.052;AOI=-321.980;AOZ=-300.809;ABE=0.950;ABZ=0.000;BCS=-28444.674;FIC=1.000;LQR=0.034;MQ0=0.000;MQ10=0.854;MQ20=0.884;MQ30=0.971;MENDEL=2;SVM=-0.90232682;AN=920;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568256	rs137953150	C	T	0.0	SVM	NS=455;AF=1.000;AC=910;s50=0.98;LBS=7,31,180,175,6,14,151,1014;OBS=4,3,819,1439,4,1,46844,72179;STZ=-0.009;STZ=-2.969;CBZ=-0.018;CBZ=-6.266;QBZ=0.114;QBZ=39.806;MBR=-0.500;MSR=0.025;MBZ=-174.287;IOZ=0.026;IOH=-21.104;IOD=1.000;IOD=1.000;AOZ=-6545.452;AOZ=-6524.348;ABZ=0.500;ABZ=0.000;BCS=-658019.961;FIC=-nan;LQR=0.012;MQ10=0.000;MQ10=0.932;MQ20=0.949;MQ30=0.983;MENDEL=0;SVM=-0.49628886;AN=910;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568275	.	A	T	0.0	SVM	NS=459;AF=0.002;AC=2;s50=0.99;LBS=565,4522,16,48,10,26,43,119;OBS=43418,45001,18,8,10,1,1338,1593;STR=0.012;STZ=3.680;CBR=-0.000;CBZ=-0.096;QBR=-0.038;QBZ=-11.526;MBR=0.321;MSR=0.024;MBZ=96.975;IOR=0.077;IOZ=-21.044;IOH=0.022;IOD=0.022;AOI=-180.992;AOZ=-159.947;ABE=0.978;ABZ=0.000;BCS=-14905.012;FIC=1.000;LQR=0.054;MQ0=0.000;MQ10=0.843;MQ20=0.873;MQ30=0.966;MENDEL=0;SVM=-1.0033769;AN=918;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568292	.	T	C	0.0	SVM	NS=464;AF=0.004;AC=4;s50=1.00;LBS=20,37,20,65,8,33,1182,1783;OBS=2,6,613,506,9,2,37322,31786;STR=-0.002;STZ=-0.514;CBR=-0.010;CBZ=-2.641;QBR=0.032;QBZ=8.527;MBR=0.166;MSR=0.029;MBZ=43.984;IOR=0.043;IOZ=-20.610;IOH=0.000;IOD=-0.000;AOI=-83.079;AOZ=-62.469;ABE=1.000;ABZ=3.500;BCS=-5556.398;FIC=1.000;LQR=0.042;MQ0=0.000;MQ10=0.799;MQ20=0.833;MQ30=0.952;MENDEL=0;SVM=-0.38877102;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568319	.	A	G	0.0	SVM	NS=462;AF=0.002;AC=2;s50=1.00;LBS=792,1612,19,32,19,52,15,23;OBS=30342,25218,6,7,611,478,12,4;STZ=-0.004;STZ=-0.978;CBZ=0.018;CBZ=4.197;QBZ=0.029;QBZ=6.933;MBR=0.184;MSR=0.017;MBZ=43.853;IOZ=0.077;IOH=-18.711;IOD=0.000;IOD=-0.001;AOZ=-85.210;AOZ=-66.499;ABZ=1.000;ABZ=4.367;BCS=-5368.182;FIC=1.000;LQR=0.042;MQ10=0.000;MQ10=0.797;MQ20=0.834;MQ30=0.950;MENDEL=0;SVM=-0.7856608;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568322	rs150222218	A	G	0.0	SVM	NS=463;AF=0.008;AC=6;s50=1.00;LBS=374,556,17,5,53,37,27,8;OBS=29960,24787,11,3,1024,888,24,5;STR=0.004;STZ=1.010;CBR=0.000;CBZ=0.051;QBR=-0.027;QBZ=-6.346;MBR=0.258;MSR=0.019;MBZ=61.414;IOR=0.137;IOZ=-16.464;IOH=0.000;IOD=-0.001;AOI=-149.031;AOZ=-132.567;ABE=1.000;ABZ=5.211;BCS=-9938.388;FIC=1.000;LQR=0.018;MQ0=0.000;MQ10=0.790;MQ20=0.829;MQ30=0.948;MENDEL=1;SVM=-0.57371631;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568340	.	G	A	0.0	SVM	NS=464;AF=0.006;AC=6;s50=1.00;LBS=176,28,168,10,3574,2431,120,8;OBS=386,622,3,5,24666,47268,3,25;STR=-0.010;STZ=-2.667;CBR=-0.009;CBZ=-2.316;QBR=0.012;QBZ=3.155;MBR=0.244;MSR=-0.026;MBZ=65.771;IOR=0.059;IOZ=-24.111;IOH=0.000;IOD=-0.000;AOI=-71.762;AOZ=-47.651;ABE=1.000;ABZ=0.040;BCS=-4347.816;FIC=1.000;LQR=0.078;MQ0=0.000;MQ10=0.887;MQ20=0.912;MQ30=0.972;MENDEL=2;SVM=-0.62640553;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568356	.	G	A	0.0	SVM	NS=464;AF=0.004;AC=4;s50=1.00;LBS=73,32,46,12,1485,1046,39,2;OBS=282,566,3,4,29717,75364,3,1;STR=-0.010;STZ=-3.217;CBR=0.001;CBZ=0.222;QBR=-0.012;QBZ=-3.755;MBR=0.246;MSR=-0.005;MBZ=79.929;IOR=0.021;IOZ=-22.663;IOH=0.989;IOD=0.989;AOI=-65.797;AOZ=-43.134;ABE=0.503;ABZ=0.000;BCS=-3898.993;FIC=1.000;LQR=0.024;MQ0=0.000;MQ10=0.930;MQ20=0.949;MQ30=0.982;MENDEL=0;SVM=-0.26659673;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568361	rs143080150	T	C	0.0	SVM	NS=464;AF=1.000;AC=924;s50=0.99;LBS=30,9,178,216,10,7,252,188;OBS=5,14,39727,90126,4,1,992,1959;STZ=0.010;STZ=3.527;CBZ=-0.002;CBZ=-0.708;QBZ=0.126;QBZ=46.049;MBR=-0.657;MSR=0.007;MBZ=-239.267;IOZ=0.050;IOH=-21.275;IOD=1.000;IOD=1.000;AOZ=-7078.741;AOZ=-7057.465;ABZ=0.500;ABZ=0.000;BCS=-724399.192;FIC=-nan;LQR=0.006;MQ10=0.000;MQ10=0.950;MQ20=0.964;MQ30=0.987;MENDEL=0;SVM=-0.54322746;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568373	.	A	G	0.0	SVM	NS=464;AF=0.004;AC=4;s50=1.00;LBS=1465,6382,60,266,47,85,57,34;OBS=29773,58194,8,12,239,554,12,2;STR=0.007;STZ=2.183;CBR=0.007;CBZ=1.986;QBR=-0.005;QBZ=-1.513;MBR=0.242;MSR=0.006;MBZ=72.174;IOR=0.061;IOZ=-22.878;IOH=0.083;IOD=0.082;AOI=-62.136;AOZ=-39.258;ABE=0.924;ABZ=0.000;BCS=-3513.346;FIC=1.000;LQR=0.082;MQ0=0.000;MQ10=0.927;MQ20=0.945;MQ30=0.978;MENDEL=1;SVM=-0.65065389;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568416	.	T	C	0.0	SVM	NS=464;AF=0.001;AC=1;s50=1.00;LBS=68,51,90,55,43,12,1548,5505;OBS=6,20,40,61,12,13,45092,54822;STR=0.003;STZ=1.100;CBR=0.020;CBZ=6.263;QBR=-0.030;QBZ=-9.596;MBR=0.025;MSR=-0.010;MBZ=7.781;IOR=0.075;IOZ=-25.030;IOH=0.000;IOD=-0.001;AOI=-28.524;AOZ=-3.494;ABE=0.824;ABZ=13.604;BCS=536.461;FIC=-0.036;LQR=0.067;MQ0=0.000;MQ10=0.950;MQ20=0.963;MQ30=0.982;MENDEL=1;SVM=-0.52209621;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568419	rs141761147	T	C	0.0	SVM	NS=464;AF=0.997;AC=917;s50=0.98;LBS=33,1,970,274,21,1,205,94;OBS=3,11,51277,68068,2,0,1039,1486;STZ=-0.005;STZ=-1.822;CBZ=-0.005;CBZ=-1.667;QBZ=0.052;QBZ=18.045;MBR=-0.688;MSR=0.005;MBZ=-240.025;IOZ=0.029;IOH=-22.982;IOD=0.000;IOD=-0.000;AOZ=-6038.829;AOZ=-6015.847;ABZ=0.123;ABZ=-11.784;BCS=-651262.292;FIC=0.959;LQR=0.013;MQ10=0.000;MQ10=0.955;MQ20=0.968;MQ30=0.986;MENDEL=2;SVM=-0.61440711;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568442	rs146264256	T	C	0.0	SVM	NS=464;AF=0.993;AC=915;s50=0.99;LBS=28,21,2486,1116,11,14,82,160;OBS=3,10,48700,56938,0,3,1155,1151;STR=0.012;STZ=3.799;CBR=-0.001;CBZ=-0.263;QBR=0.031;QBZ=10.319;MBR=-0.740;MSR=-0.020;MBZ=-243.235;IOR=0.030;IOZ=-22.759;IOH=0.000;IOD=-0.000;AOI=-5401.745;AOZ=-5378.986;ABE=0.133;ABZ=-17.672;BCS=-564982.148;FIC=0.606;LQR=0.034;MQ0=0.000;MQ10=0.957;MQ20=0.966;MQ30=0.981;MENDEL=2;SVM=-0.51245659;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568448	.	G	A	0.0	PASS	NS=464;AF=0.003;AC=3;s50=1.00;LBS=57,101,55,74,1291,1959,28,114;OBS=238,209,4,8,47301,48260,12,8;STR=-0.005;STZ=-1.579;CBR=0.007;CBZ=2.176;QBR=-0.004;QBZ=-1.211;MBR=0.211;MSR=-0.010;MBZ=65.359;IOR=0.065;IOZ=-21.548;IOH=0.000;IOD=-0.000;AOI=-44.687;AOZ=-23.138;ABE=0.877;ABZ=17.706;BCS=-1654.108;FIC=0.654;LQR=0.034;MQ0=0.000;MQ10=0.948;MQ20=0.962;MQ30=0.982;MENDEL=0;SVM=0.26722623;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568463	rs138107770	A	G	0.0	SVM	NS=464;AF=0.995;AC=917;s50=0.99;LBS=52,200,9,40,287,995,5,43;OBS=1147,1091,0,3,44680,42163,1,6;STZ=-0.001;STZ=-0.186;CBZ=-0.014;CBZ=-4.177;QBZ=0.044;QBZ=13.215;MBR=-0.692;MSR=-0.012;MBZ=-206.527;IOZ=0.026;IOH=-19.210;IOD=0.000;IOD=-0.000;AOZ=-5253.978;AOZ=-5234.768;ABZ=0.153;ABZ=-15.352;BCS=-471442.418;FIC=0.503;LQR=0.017;MQ10=0.000;MQ10=0.945;MQ20=0.959;MQ30=0.982;MENDEL=2;SVM=-0.4695639;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568481	.	A	G	0.0	SVM	NS=464;AF=0.001;AC=1;s50=1.00;LBS=896,2417,42,96,8,137,17,98;OBS=34094,35715,11,52,43,55,2,12;STR=0.004;STZ=0.975;CBR=0.001;CBZ=0.302;QBR=-0.017;QBZ=-4.599;MBR=0.045;MSR=-0.000;MBZ=11.960;IOR=0.156;IOZ=-20.372;IOH=0.000;IOD=-0.001;AOI=-23.733;AOZ=-3.361;ABE=0.770;ABZ=14.127;BCS=51.195;FIC=-0.036;LQR=0.047;MQ0=0.000;MQ10=0.865;MQ20=0.893;MQ30=0.946;MENDEL=0;SVM=-0.053908711;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568511	.	A	G	0.0	SVM	NS=462;AF=0.002;AC=2;s50=1.00;LBS=1776,4033,41,155,39,137,35,31;OBS=21517,40996,35,20,703,904,106,4;STR=-0.031;STZ=-7.763;CBR=0.015;CBZ=3.864;QBR=-0.012;QBZ=-2.977;MBR=0.182;MSR=-0.044;MBZ=46.019;IOR=0.304;IOZ=-19.240;IOH=0.001;IOD=-0.002;AOI=-109.063;AOZ=-89.823;ABE=1.000;ABZ=0.022;BCS=-8401.189;FIC=1.000;LQR=0.085;MQ0=0.000;MQ10=0.821;MQ20=0.851;MQ30=0.927;MENDEL=1;SVM=-0.70502427;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568572	rs139256206	G	A	0.0	SVM	NS=416;AF=0.999;AC=830;s50=0.88;LBS=1197,3618,198,176,520,867,191,139;OBS=40830,65508,41,9,864,1333,4,16;STZ=0.003;STZ=0.892;CBZ=-0.008;CBZ=-2.745;QBZ=0.065;QBZ=21.517;MBR=-0.214;MSR=-0.027;MBZ=-70.566;IOZ=0.114;IOH=-23.286;IOD=0.000;IOD=-0.001;AOZ=-5295.347;AOZ=-5272.061;ABZ=0.244;ABZ=-5.838;BCS=-571191.435;FIC=-2.452;LQR=0.054;MQ10=0.000;MQ10=0.662;MQ20=0.729;MQ30=0.928;MENDEL=0;SVM=-0.18391565;AN=832;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568578	.	G	A	0.0	SVM	NS=427;AF=0.241;AC=208;s50=0.91;LBS=1354,1347,42,15,1388,2941,20,20;OBS=24682,38577,15,18,23486,34517,0,7;STR=0.015;STZ=5.239;CBR=0.006;CBZ=2.056;QBR=0.152;QBZ=52.801;MBR=0.618;MSR=-0.011;MBZ=215.123;IOR=0.052;IOZ=-26.979;IOH=0.000;IOD=-0.000;AOI=-2747.073;AOZ=-2720.094;ABE=0.109;ABZ=-9.598;BCS=-342348.938;FIC=0.995;LQR=0.055;MQ0=0.000;MQ10=0.517;MQ20=0.601;MQ30=0.897;MENDEL=17;SVM=-0.76621595;AN=854;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568598	.	T	C	0.0	SVM	NS=441;AF=0.011;AC=10;s50=0.94;LBS=32,157,70,220,26,125,1567,2724;OBS=8,17,3486,5117,5,11,29236,42744;STR=0.001;STZ=0.170;CBR=0.026;CBZ=7.390;QBR=0.153;QBZ=43.410;MBR=0.260;MSR=0.012;MBZ=73.792;IOR=0.088;IOZ=-20.648;IOH=0.000;IOD=-0.001;AOI=-501.870;AOZ=-481.222;ABE=1.000;ABZ=4.148;BCS=-47693.582;FIC=1.000;LQR=0.054;MQ0=0.000;MQ10=0.674;MQ20=0.747;MQ30=0.946;MENDEL=2;SVM=-1.2763816;AN=882;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568616	rs144294451	A	G	0.0	SVM	NS=432;AF=0.997;AC=850;s50=0.89;LBS=701,1094,133,158,686,749,113,190;OBS=1077,1353,9,15,24980,34889,6,21;STZ=0.010;STZ=2.546;CBZ=-0.015;CBZ=-3.751;QBZ=0.113;QBZ=28.276;MBR=-0.566;MSR=-0.002;MBZ=-141.151;IOZ=0.150;IOH=-17.009;IOD=0.001;IOD=0.000;AOZ=-4074.584;AOZ=-4057.575;ABZ=0.275;ABZ=-7.467;BCS=-317918.798;FIC=-2.379;LQR=0.049;MQ10=0.000;MQ10=0.890;MQ20=0.918;MQ30=0.970;MENDEL=0;SVM=-0.51364037;AN=864;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568691	rs141850957	T	C	0.0	SVM	NS=454;AF=0.989;AC=867;s50=0.89;LBS=74,12,1397,291,47,20,119,170;OBS=7,10,29066,38648,4,3,910,974;STR=0.018;STZ=4.651;CBR=-0.017;CBZ=-4.374;QBR=0.056;QBZ=14.866;MBR=-0.768;MSR=-0.015;MBZ=-202.716;IOR=0.069;IOZ=-17.984;IOH=0.041;IOD=0.041;AOI=-4375.954;AOZ=-4357.969;ABE=0.733;ABZ=2.815;BCS=-365404.655;FIC=0.446;LQR=0.028;MQ0=0.000;MQ10=0.952;MQ20=0.964;MQ30=0.981;MENDEL=2;SVM=-0.82504762;AN=908;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568703	rs143001019	A	G	0.0	SVM	NS=454;AF=0.977;AC=860;s50=0.89;LBS=193,367,30,28,874,3380,21,65;OBS=1393,1493,9,5,31017,23333,37,7;STR=-0.039;STZ=-9.298;CBR=-0.003;CBZ=-0.662;QBR=0.020;QBZ=4.722;MBR=-0.773;MSR=0.031;MBZ=-184.887;IOR=0.142;IOZ=-18.727;IOH=0.000;IOD=-0.001;AOI=-3360.069;AOZ=-3341.342;ABE=0.453;ABZ=-0.907;BCS=-279195.209;FIC=0.536;LQR=0.078;MQ0=0.000;MQ10=0.938;MQ20=0.954;MQ30=0.977;MENDEL=1;SVM=-0.61053409;AN=908;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568718	rs150918512	C	T	0.0	SVM	NS=450;AF=0.973;AC=846;s50=0.87;LBS=24,56,120,131,16,96,1066,1206;OBS=3,2,879,834,1,7,22330,19951;STR=-0.006;STZ=-1.220;CBR=0.022;CBZ=4.582;QBR=0.033;QBZ=6.883;MBR=-0.765;MSR=0.002;MBZ=-160.376;IOR=0.055;IOZ=-14.993;IOH=0.000;IOD=-0.000;AOI=-3280.788;AOZ=-3265.795;ABE=0.424;ABZ=-1.848;BCS=-223400.073;FIC=0.335;LQR=0.054;MQ0=0.000;MQ10=0.940;MQ20=0.954;MQ30=0.973;MENDEL=2;SVM=-0.62618714;AN=900;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568739	.	A	G	0.0	SVM	NS=448;AF=0.001;AC=1;s50=0.94;LBS=975,671,45,12,26,9,33,10;OBS=15959,21996,24,45,31,33,3,1;STR=-0.005;STZ=-1.047;CBR=0.015;CBZ=3.004;QBR=-0.015;QBZ=-2.871;MBR=0.042;MSR=-0.004;MBZ=8.203;IOR=0.249;IOZ=-14.866;IOH=0.008;IOD=0.006;AOI=-17.005;AOZ=-2.139;ABE=0.413;ABZ=-2.295;BCS=-307.339;FIC=-0.054;LQR=0.042;MQ0=0.000;MQ10=0.908;MQ20=0.932;MQ30=0.956;MENDEL=1;SVM=-1.708268;AN=896;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568752	.	T	C	0.0	SVM	NS=421;AF=0.883;AC=672;s50=0.71;LBS=15,5,261,270,10,1,97,44;OBS=1,3,9313,22640,1,0,713,1371;STZ=0.027;STZ=4.924;CBZ=0.032;CBZ=5.928;QBZ=0.046;QBZ=8.568;MBR=-0.790;MSR=-0.037;MBZ=-145.666;IOZ=0.031;IOH=-12.511;IOD=0.000;IOD=-0.000;AOZ=-2970.999;AOZ=-2958.488;ABZ=0.241;ABZ=-30.218;BCS=-165053.443;FIC=0.339;LQR=0.019;MQ10=0.000;MQ10=0.901;MQ20=0.923;MQ30=0.951;MENDEL=4;SVM=-0.98252289;AN=842;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568755	rs150147183	G	A	0.0	SVM	NS=428;AF=0.002;AC=2;s50=0.89;LBS=18,41,16,10,354,334,18,9;OBS=228,448,2,1,12350,25598,0,6;STR=-0.003;STZ=-0.664;CBR=0.025;CBZ=4.956;QBR=-0.065;QBZ=-12.788;MBR=0.163;MSR=-0.020;MBZ=32.044;IOR=0.041;IOZ=-14.623;IOH=0.000;IOD=-0.000;AOI=-67.881;AOZ=-53.257;ABE=0.988;ABZ=4.228;BCS=-2780.638;FIC=0.998;LQR=0.019;MQ0=0.000;MQ10=0.897;MQ20=0.920;MQ30=0.955;MENDEL=0;SVM=-1.7097066;AN=856;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),TRANSCRIPT(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568941	rs150104574	A	G	0.0	SVM	NS=402;AF=0.998;AC=791;s50=0.84;LBS=1217,162,342,22,1262,730,271,27;OBS=1146,1663,21,10,21906,41286,26,32;STZ=0.026;STZ=6.674;CBZ=0.005;CBZ=1.364;QBZ=0.045;QBZ=11.542;MBR=-0.540;MSR=-0.009;MBZ=-138.665;IOZ=0.204;IOH=-18.597;IOD=0.001;IOD=-0.001;AOZ=-3920.329;AOZ=-3901.732;ABZ=0.166;ABZ=-15.620;BCS=-330397.345;FIC=-2.009;LQR=0.049;MQ10=0.000;MQ10=0.849;MQ20=0.889;MQ30=0.972;MENDEL=2;SVM=-0.47359799;AN=804;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	568963	rs138162131	C	T	0.0	SVM	NS=419;AF=0.005;AC=4;s50=0.90;LBS=23,14,526,1484,9,6,116,280;OBS=6,3,23040,50263,0,2,5228,12197;STR=0.012;STZ=3.657;CBR=0.020;CBZ=6.132;QBR=0.015;QBZ=4.575;MBR=0.466;MSR=0.013;MBZ=140.427;IOR=0.027;IOZ=-19.893;IOH=0.001;IOD=0.000;AOI=-1034.888;AOZ=-1014.995;ABE=0.999;ABZ=0.016;BCS=-94875.478;FIC=1.000;LQR=0.026;MQ0=0.000;MQ10=0.697;MQ20=0.754;MQ30=0.937;MENDEL=1;SVM=-1.1740662;AN=838;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569004	.	T	C	0.0	SVM	NS=447;AF=0.996;AC=884;s50=0.94;LBS=17,97,288,1758,2,10,104,719;OBS=7,13,58774,67502,1,4,995,1219;STZ=-0.004;STZ=-1.497;CBZ=-0.009;CBZ=-3.260;QBZ=0.074;QBZ=26.687;MBR=-0.490;MSR=-0.027;MBZ=-175.623;IOZ=0.041;IOH=-24.107;IOD=0.000;IOD=-0.000;AOZ=-6099.368;AOZ=-6075.262;ABZ=0.443;ABZ=-0.474;BCS=-690576.869;FIC=0.613;LQR=0.022;MQ10=0.000;MQ10=0.886;MQ20=0.914;MQ30=0.974;MENDEL=1;SVM=-0.58278849;AN=894;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569010	.	T	C	0.0	SVM	NS=446;AF=0.996;AC=883;s50=0.94;LBS=6,24,213,785,2,12,37,62;OBS=5,11,54945,66067,1,2,988,1291;STR=-0.006;STZ=-1.947;CBR=0.000;CBZ=0.058;QBR=0.054;QBZ=19.023;MBR=-0.505;MSR=-0.021;MBZ=-177.148;IOR=0.039;IOZ=-21.637;IOH=0.000;IOD=-0.000;AOI=-6490.438;AOZ=-6468.800;ABE=0.139;ABZ=-6.722;BCS=-668784.852;FIC=0.745;LQR=0.009;MQ0=0.000;MQ10=0.887;MQ20=0.914;MQ30=0.974;MENDEL=1;SVM=-0.52831208;AN=892;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569052	rs138605248	C	T	0.0	SVM	NS=444;AF=0.999;AC=870;s50=0.91;LBS=24,203,161,871,19,149,703,1511;OBS=74,54,1131,1127,2,24,49251,38926;STR=-0.018;STZ=-5.448;CBR=-0.003;CBZ=-1.012;QBR=0.045;QBZ=13.609;MBR=-0.376;MSR=-0.019;MBZ=-113.194;IOR=0.287;IOZ=-19.527;IOH=0.003;IOD=0.001;AOI=-5213.371;AOZ=-5193.844;ABE=0.192;ABZ=-10.722;BCS=-480169.139;FIC=-2.697;LQR=0.035;MQ0=0.000;MQ10=0.812;MQ20=0.863;MQ30=0.971;MENDEL=1;SVM=-0.16310006;AN=888;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569094	rs140303844	A	G	0.0	SVM	NS=430;AF=1.000;AC=858;s50=0.91;LBS=467,127,102,5,1012,153,45,7;OBS=879,1576,5,18,41619,65814,28,27;STR=-0.009;STZ=-2.947;CBR=0.013;CBZ=4.308;QBR=0.143;QBZ=47.270;MBR=-0.330;MSR=-0.055;MBZ=-109.285;IOR=0.157;IOZ=-20.389;IOH=1.000;IOD=0.999;AOI=-6063.468;AOZ=-6043.079;ABE=0.500;ABZ=0.000;BCS=-594036.553;FIC=-nan;LQR=0.016;MQ0=0.000;MQ10=0.794;MQ20=0.845;MQ30=0.965;MENDEL=1;SVM=-0.46676162;AN=860;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569106	.	G	A	0.0	SVM	NS=451;AF=0.006;AC=6;s50=0.96;LBS=133,154,75,16,1859,3089,49,3;OBS=1307,1843,9,7,26605,51196,11,21;STR=-0.030;STZ=-8.450;CBR=0.008;CBZ=2.233;QBR=-0.028;QBZ=-8.073;MBR=0.226;MSR=-0.027;MBZ=64.243;IOR=0.095;IOZ=-21.392;IOH=0.000;IOD=-0.001;AOI=-190.283;AOZ=-168.891;ABE=1.000;ABZ=5.445;BCS=-15908.952;FIC=1.000;LQR=0.061;MQ0=0.000;MQ10=0.713;MQ20=0.774;MQ30=0.941;MENDEL=0;SVM=-1.1112841;AN=902;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569116	.	T	C	0.0	SVM	NS=459;AF=0.002;AC=2;s50=0.98;LBS=6,46,22,142,6,45,814,4040;OBS=5,38,205,632,0,21,20057,49111;STR=0.011;STZ=2.839;CBR=0.018;CBZ=4.785;QBR=0.024;QBZ=6.229;MBR=0.114;MSR=-0.002;MBZ=30.169;IOR=0.122;IOZ=-21.424;IOH=0.000;IOD=-0.001;AOI=-64.777;AOZ=-43.353;ABE=1.000;ABZ=3.143;BCS=-3791.198;FIC=1.000;LQR=0.067;MQ0=0.000;MQ10=0.673;MQ20=0.735;MQ30=0.909;MENDEL=0;SVM=-1.1580393;AN=918;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569133	.	G	A	0.0	SVM	NS=400;AF=0.085;AC=64;s50=0.86;LBS=469,1433,100,20,917,2693,45,30;OBS=8595,19248,10,14,6362,22726,2,10;STZ=-0.102;STZ=-24.384;CBZ=-0.038;CBZ=-9.037;QBZ=0.081;QBZ=19.287;MBR=0.427;MSR=-0.010;MBZ=101.899;IOZ=0.085;IOH=-19.760;IOD=0.000;IOD=-0.001;AOZ=-1649.485;AOZ=-1629.724;ABZ=1.000;ABZ=8.432;BCS=-145430.058;FIC=1.000;LQR=0.088;MQ10=0.000;MQ10=0.475;MQ20=0.553;MQ30=0.875;MENDEL=2;SVM=-0.98495229;AN=800;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569154	.	C	T	0.0	SVM	NS=435;AF=0.001;AC=1;s50=0.94;LBS=22,17,1552,2371,4,11,55,28;OBS=0,5,13398,45298,1,2,20,35;STR=-0.010;STZ=-2.455;CBR=0.008;CBZ=2.048;QBR=-0.021;QBZ=-5.139;MBR=0.009;MSR=0.030;MBZ=2.072;IOR=0.025;IOZ=-17.615;IOH=0.000;IOD=-0.000;AOI=-20.975;AOZ=-3.360;ABE=0.789;ABZ=9.732;BCS=291.850;FIC=-0.036;LQR=0.064;MQ0=0.000;MQ10=0.687;MQ20=0.739;MQ30=0.912;MENDEL=0;SVM=-0.9424911;AN=870;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569190	.	A	G	0.0	SVM	NS=460;AF=0.006;AC=6;s50=0.99;LBS=973,1609,33,26,60,29,24,6;OBS=41602,62120,19,2,713,1144,34,0;STR=0.005;STZ=1.489;CBR=0.001;CBZ=0.199;QBR=-0.010;QBZ=-3.382;MBR=0.255;MSR=0.026;MBZ=82.816;IOR=0.091;IOZ=-23.448;IOH=0.000;IOD=-0.001;AOI=-113.544;AOZ=-90.096;ABE=1.000;ABZ=1.190;BCS=-9071.757;FIC=1.000;LQR=0.025;MQ0=0.000;MQ10=0.894;MQ20=0.917;MQ30=0.970;MENDEL=0;SVM=-1.0640752;AN=920;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569204	rs145433303	T	C	0.0	SVM	NS=440;AF=0.998;AC=875;s50=0.93;LBS=6,13,529,386,2,8,48,187;OBS=4,25,53238,73759,4,3,1021,1519;STZ=-0.005;STZ=-1.740;CBZ=-0.004;CBZ=-1.520;QBZ=0.098;QBZ=35.365;MBR=-0.479;MSR=0.010;MBZ=-172.464;IOZ=0.067;IOH=-22.401;IOD=0.000;IOD=-0.000;AOZ=-6582.404;AOZ=-6560.003;ABZ=0.089;ABZ=-0.205;BCS=-706371.654;FIC=1.000;LQR=0.009;MQ10=0.000;MQ10=0.921;MQ20=0.940;MQ30=0.982;MENDEL=0;SVM=-0.79943921;AN=880;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569226	rs138069586	C	A	0.0	SVM	NS=435;AF=0.999;AC=868;s50=0.93;LBS=1106,1309,97,57,12,25,19,17;OBS=58120,66472,1040,1274,15,12,15,8;STR=-0.005;STZ=-1.627;CBR=0.001;CBZ=0.253;QBR=-0.010;QBZ=-3.441;MBR=-0.313;MSR=0.003;MBZ=-111.578;IOR=0.073;IOZ=-25.163;IOH=0.000;IOD=-0.000;AOI=-5753.472;AOZ=-5728.309;ABE=0.157;ABZ=-8.848;BCS=-672377.221;FIC=-0.036;LQR=0.020;MQ0=0.000;MQ10=0.819;MQ20=0.854;MQ30=0.972;MENDEL=0;SVM=-0.11344584;AN=870;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569230	.	T	C	0.0	SVM	NS=441;AF=0.002;AC=2;s50=0.95;LBS=21,135,29,131,9,49,828,7439;OBS=6,30,601,676,5,7,60811,60684;STR=0.006;STZ=2.124;CBR=0.003;CBZ=1.068;QBR=0.037;QBZ=12.958;MBR=0.145;MSR=0.009;MBZ=50.833;IOR=0.061;IOZ=-27.158;IOH=0.000;IOD=-0.000;AOI=-80.620;AOZ=-53.462;ABE=1.000;ABZ=3.067;BCS=-5974.913;FIC=1.000;LQR=0.064;MQ0=0.000;MQ10=0.795;MQ20=0.834;MQ30=0.959;MENDEL=0;SVM=-1.367726;AN=882;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569246	.	G	A	0.0	SVM	NS=452;AF=0.002;AC=2;s50=0.97;LBS=74,50,42,18,1652,1029,24,30;OBS=653,772,1,12,64660,68405,9,14;STR=0.006;STZ=2.078;CBR=0.011;CBZ=3.969;QBR=-0.024;QBZ=-8.947;MBR=0.103;MSR=0.031;MBZ=37.895;IOR=0.053;IOZ=-25.520;IOH=0.000;IOD=-0.000;AOI=-89.411;AOZ=-63.891;ABE=1.000;ABZ=1.502;BCS=-6373.929;FIC=0.999;LQR=0.020;MQ0=0.000;MQ10=0.691;MQ20=0.746;MQ30=0.929;MENDEL=1;SVM=-1.2112942;AN=904;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569250	rs149524355	G	A	0.0	SVM	NS=449;AF=0.672;AC=607;s50=0.96;LBS=289,413,27,10,1124,443,15,11;OBS=40863,39837,16,45,29727,32531,20,14;STZ=-0.029;STZ=-10.827;CBZ=0.002;CBZ=0.618;QBZ=0.081;QBZ=30.736;MBR=-0.727;MSR=0.023;MBZ=-274.914;IOZ=0.123;IOH=-26.008;IOD=0.000;IOD=-0.001;AOZ=-3605.118;AOZ=-3579.110;ABZ=0.302;ABZ=-3.452;BCS=-439141.410;FIC=0.989;LQR=0.016;MQ10=0.000;MQ10=0.635;MQ20=0.699;MQ30=0.925;MENDEL=19;SVM=-0.80189998;AN=898;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569267	rs144154237	G	A	0.0	SVM	NS=334;AF=0.997;AC=664;s50=0.71;LBS=713,1042,29,35,110,259,23,34;OBS=59521,63762,8,5,1214,1151,19,6;STR=0.008;STZ=2.942;CBR=-0.012;CBZ=-4.274;QBR=0.044;QBZ=15.451;MBR=-0.326;MSR=-0.007;MBZ=-115.552;IOR=0.065;IOZ=-23.363;IOH=0.000;IOD=-0.000;AOI=-6125.470;AOZ=-6102.107;ABE=0.666;ABZ=0.813;BCS=-673499.267;FIC=0.655;LQR=0.017;MQ0=0.000;MQ10=0.759;MQ20=0.809;MQ30=0.937;MENDEL=0;SVM=-0.80824496;AN=668;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569343	rs139706527	C	T	0.0	SVM	NS=353;AF=0.079;AC=58;s50=0.76;LBS=63,26,1816,706,19,11,1513,1099;OBS=14,12,25814,47056,2,1,18080,38595;STR=0.037;STZ=13.292;CBR=-0.010;CBZ=-3.699;QBR=-0.011;QBZ=-3.865;MBR=0.576;MSR=0.061;MBZ=207.351;IOR=0.038;IOZ=-27.011;IOH=0.000;IOD=-0.000;AOI=-2460.697;AOZ=-2433.686;ABE=1.000;ABZ=4.334;BCS=-300373.552;FIC=1.000;LQR=0.038;MQ0=0.000;MQ10=0.646;MQ20=0.705;MQ30=0.934;MENDEL=5;SVM=-0.98634463;AN=706;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||RP5-857K21.5|lincRNA|NON_CODING|ENST00000452176|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569492	rs147253560	T	C	0.0	SVM	NS=457;AF=0.999;AC=904;s50=0.95;LBS=19,22,82,119,10,5,126,185;OBS=5,78,29903,60674,2,3,855,1385;STR=0.017;STZ=5.127;CBR=-0.005;CBZ=-1.537;QBR=0.135;QBZ=41.280;MBR=-0.642;MSR=-0.015;MBZ=-195.536;IOR=0.227;IOZ=-17.275;IOH=0.000;IOD=-0.001;AOI=-6042.321;AOZ=-6025.046;ABE=0.208;ABZ=-8.442;BCS=-504734.881;FIC=-2.042;LQR=0.005;MQ0=0.000;MQ10=0.933;MQ20=0.951;MQ30=0.981;MENDEL=1;SVM=-0.59950734;AN=914;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569495	rs144353691	A	G	0.0	SVM	NS=458;AF=0.002;AC=2;s50=0.98;LBS=1017,3449,29,86,32,87,37,40;OBS=33122,55789,11,53,265,521,4,7;STR=0.007;STZ=2.032;CBR=0.004;CBZ=1.228;QBR=-0.004;QBZ=-1.252;MBR=0.188;MSR=-0.010;MBZ=56.248;IOR=0.112;IOZ=-24.364;IOH=0.000;IOD=-0.000;AOI=-59.864;AOZ=-35.501;ABE=1.000;ABZ=0.029;BCS=-3514.165;FIC=1.000;LQR=0.049;MQ0=0.000;MQ10=0.918;MQ20=0.936;MQ30=0.979;MENDEL=0;SVM=-1.3591568;AN=916;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569496	.	C	T	0.0	SVM	NS=459;AF=0.004;AC=4;s50=0.98;LBS=31,69,593,1516,15,46,36,68;OBS=4,1,31050,51718,2,2,273,467;STR=0.001;STZ=0.339;CBR=0.004;CBZ=1.271;QBR=-0.009;QBZ=-2.706;MBR=0.195;MSR=-0.011;MBZ=56.330;IOR=0.023;IOZ=-19.796;IOH=0.000;IOD=-0.000;AOI=-62.892;AOZ=-43.097;ABE=1.000;ABZ=0.613;BCS=-3425.450;FIC=1.000;LQR=0.026;MQ0=0.000;MQ10=0.911;MQ20=0.932;MQ30=0.978;MENDEL=0;SVM=-1.3363554;AN=918;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569524	.	T	C	0.0	SVM	NS=463;AF=0.004;AC=4;s50=1.00;LBS=18,47,28,73,9,15,1253,2601;OBS=11,16,343,563,18,12,42177,53663;STZ=0.012;STZ=3.706;CBZ=0.006;CBZ=1.996;QBZ=0.013;QBZ=4.031;MBR=0.148;MSR=0.015;MBZ=45.976;IOZ=0.109;IOH=-21.559;IOD=0.000;IOD=-0.001;AOZ=-68.497;AOZ=-46.937;ABZ=1.000;ABZ=0.207;BCS=-4363.413;FIC=1.000;LQR=0.039;MQ10=0.000;MQ10=0.878;MQ20=0.899;MQ30=0.970;MENDEL=2;SVM=-0.82145427;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569588	.	G	A	0.0	SVM	NS=463;AF=0.004;AC=4;s50=1.00;LBS=68,59,103,8,2343,1245,42,17;OBS=287,469,8,2,35529,56087,5,3;STR=0.001;STZ=0.451;CBR=-0.010;CBZ=-2.989;QBR=-0.005;QBZ=-1.505;MBR=0.134;MSR=-0.026;MBZ=40.587;IOR=0.035;IOZ=-22.326;IOH=0.030;IOD=0.030;AOI=-61.134;AOZ=-38.807;ABE=0.971;ABZ=0.000;BCS=-3325.127;FIC=1.000;LQR=0.039;MQ0=0.000;MQ10=0.845;MQ20=0.874;MQ30=0.960;MENDEL=0;SVM=-0.56760489;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569602	rs145696589	G	A	0.0	SVM	NS=462;AF=0.002;AC=2;s50=0.99;LBS=64,134,58,27,3473,4221,26,65;OBS=155,242,4,3,34351,60593,1,21;STR=-0.004;STZ=-1.197;CBR=0.013;CBZ=4.022;QBR=-0.007;QBZ=-2.155;MBR=0.095;MSR=-0.036;MBZ=29.332;IOR=0.043;IOZ=-25.596;IOH=0.003;IOD=0.003;AOI=-42.937;AOZ=-17.341;ABE=0.997;ABZ=0.003;BCS=-1033.718;FIC=1.000;LQR=0.076;MQ0=0.000;MQ10=0.848;MQ20=0.883;MQ30=0.966;MENDEL=0;SVM=-1.1172544;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569604	rs148966644	G	A	0.0	SVM	NS=461;AF=0.029;AC=28;s50=0.99;LBS=259,359,162,84,6373,10626,60,89;OBS=2268,3658,12,14,29439,58905,12,19;STZ=-0.025;STZ=-7.809;CBZ=0.007;CBZ=2.043;QBZ=0.099;QBZ=30.408;MBR=0.435;MSR=-0.040;MBZ=133.594;IOZ=0.068;IOH=-27.949;IOD=0.004;IOD=0.004;AOZ=-272.816;AOZ=-244.868;ABZ=0.996;ABZ=0.002;BCS=-30399.994;FIC=1.000;LQR=0.157;MQ10=0.000;MQ10=0.850;MQ20=0.883;MQ30=0.967;MENDEL=3;SVM=-1.0375463;AN=922;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569609	rs140803461	A	C	0.0	SVM	NS=459;AF=0.999;AC=915;s50=0.98;LBS=64,262,2251,708,4,15,10,26;OBS=894,1239,36618,76434,2,1,25,20;STR=0.027;STZ=9.303;CBR=0.007;CBZ=2.335;QBR=0.060;QBZ=20.447;MBR=-0.521;MSR=-0.038;MBZ=-176.908;IOR=0.082;IOZ=-23.271;IOH=0.000;IOD=-0.000;AOI=-5637.903;AOZ=-5614.632;ABE=0.104;ABZ=-9.534;BCS=-611351.943;FIC=1.000;LQR=0.028;MQ0=0.000;MQ10=0.886;MQ20=0.913;MQ30=0.973;MENDEL=0;SVM=-0.85466542;AN=918;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569624	rs144764545	T	C	0.0	SVM	NS=459;AF=0.999;AC=916;s50=0.98;LBS=7,24,272,495,1,14,89,151;OBS=11,28,46830,97588,6,6,1153,1816;STR=0.019;STZ=7.381;CBR=-0.012;CBZ=-4.719;QBR=0.096;QBZ=36.689;MBR=-0.505;MSR=-0.026;MBZ=-193.925;IOR=0.089;IOZ=-22.809;IOH=0.000;IOD=-0.000;AOI=-7332.567;AOZ=-7309.759;ABE=0.170;ABZ=-6.802;BCS=-806414.085;FIC=-0.037;LQR=0.007;MQ0=0.000;MQ10=0.874;MQ20=0.905;MQ30=0.975;MENDEL=0;SVM=-0.68856193;AN=918;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569646	.	A	G	0.0	SVM	NS=462;AF=0.006;AC=6;s50=1.00;LBS=2413,2635,122,20,111,28,132,18;OBS=39629,82021,9,8,458,1193,6,8;STR=0.012;STZ=4.156;CBR=0.002;CBZ=0.744;QBR=0.033;QBZ=11.629;MBR=0.170;MSR=-0.003;MBZ=59.529;IOR=0.041;IOZ=-26.995;IOH=0.483;IOD=0.483;AOI=-97.303;AOZ=-70.308;ABE=0.674;ABZ=0.000;BCS=-8185.950;FIC=1.000;LQR=0.040;MQ0=0.000;MQ10=0.800;MQ20=0.836;MQ30=0.954;MENDEL=1;SVM=-0.70497105;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569647	rs146975844	T	C	0.0	SVM	NS=462;AF=0.012;AC=12;s50=1.00;LBS=28,46,65,70,29,31,1474,1877;OBS=2,24,1239,2870,4,32,39569,77489;STR=0.014;STZ=4.860;CBR=0.010;CBZ=3.565;QBR=0.046;QBZ=16.093;MBR=0.266;MSR=0.000;MBZ=92.513;IOR=0.099;IOZ=-23.780;IOH=0.093;IOD=0.092;AOI=-221.488;AOZ=-197.708;ABE=0.915;ABZ=0.000;BCS=-22062.420;FIC=1.000;LQR=0.028;MQ0=0.000;MQ10=0.794;MQ20=0.830;MQ30=0.953;MENDEL=3;SVM=-0.84245332;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569705	.	A	G	0.0	SVM	NS=460;AF=0.002;AC=2;s50=0.99;LBS=1297,2326,45,23,48,74,67,39;OBS=37392,74723,0,12,371,779,12,10;STR=0.002;STZ=0.770;CBR=-0.011;CBZ=-3.732;QBR=0.005;QBZ=1.812;MBR=0.160;MSR=-0.031;MBZ=54.010;IOR=0.051;IOZ=-25.078;IOH=0.370;IOD=0.370;AOI=-77.414;AOZ=-52.335;ABE=0.730;ABZ=0.000;BCS=-5368.799;FIC=1.000;LQR=0.032;MQ0=0.000;MQ10=0.821;MQ20=0.861;MQ30=0.961;MENDEL=0;SVM=-0.9107415;AN=920;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569717	rs147510063	T	C	0.0	SVM	NS=457;AF=0.999;AC=913;s50=0.98;LBS=4,18,200,211,4,9,67,112;OBS=6,17,35648,74594,5,3,854,1294;STZ=0.022;STZ=7.281;CBZ=-0.006;CBZ=-2.104;QBZ=0.082;QBZ=27.629;MBR=-0.357;MSR=-0.064;MBZ=-119.788;IOZ=0.075;IOH=-19.549;IOD=0.000;IOD=-0.000;AOZ=-6535.123;AOZ=-6515.575;ABZ=0.149;ABZ=-10.470;BCS=-616473.658;FIC=-1.027;LQR=0.005;MQ10=0.000;MQ10=0.814;MQ20=0.863;MQ30=0.966;MENDEL=0;SVM=-0.39863301;AN=914;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569730	.	A	G	0.0	SVM	NS=464;AF=0.002;AC=2;s50=1.00;LBS=1899,1690,62,16,37,19,119,6;OBS=38174,59751,13,7,103,167,43,3;STR=0.001;STZ=0.267;CBR=0.016;CBZ=5.082;QBR=-0.019;QBZ=-5.929;MBR=0.082;MSR=-0.029;MBZ=25.682;IOR=0.118;IOZ=-22.204;IOH=0.012;IOD=0.011;AOI=-34.505;AOZ=-12.301;ABE=0.988;ABZ=0.001;BCS=-798.630;FIC=1.000;LQR=0.036;MQ0=0.000;MQ10=0.821;MQ20=0.859;MQ30=0.961;MENDEL=0;SVM=-0.74395775;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569745	.	G	A	0.0	SVM	NS=464;AF=0.002;AC=2;s50=1.00;LBS=124,120,34,58,3592,4259,19,84;OBS=277,369,4,3,45614,46421,12,8;STR=0.011;STZ=3.382;CBR=0.013;CBZ=3.913;QBR=0.013;QBZ=4.079;MBR=0.123;MSR=-0.016;MBZ=37.295;IOR=0.047;IOZ=-23.584;IOH=0.000;IOD=-0.000;AOI=-54.706;AOZ=-31.122;ABE=1.000;ABZ=0.202;BCS=-2681.012;FIC=1.000;LQR=0.080;MQ0=0.000;MQ10=0.806;MQ20=0.842;MQ30=0.954;MENDEL=0;SVM=-0.58700207;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569761	.	C	T	0.0	SVM	NS=464;AF=0.004;AC=4;s50=1.00;LBS=6,9,1222,662,1,7,37,61;OBS=5,13,48960,53509,5,1,534,623;STZ=0.003;STZ=1.100;CBZ=0.002;CBZ=0.635;QBZ=-0.031;QBZ=-9.931;MBR=0.150;MSR=-0.012;MBZ=48.216;IOZ=0.051;IOH=-21.248;IOD=0.776;IOD=0.776;AOZ=-83.680;AOZ=-62.432;ABZ=0.563;ABZ=0.000;BCS=-5540.556;FIC=1.000;LQR=0.019;MQ10=0.000;MQ10=0.818;MQ20=0.849;MQ30=0.954;MENDEL=0;SVM=-0.14101576;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569770	rs138377046	A	G	0.0	SVM	NS=464;AF=0.008;AC=8;s50=1.00;LBS=939,2166,25,45,96,68,24,45;OBS=47543,47119,47,50,991,1181,135,15;STR=0.014;STZ=4.236;CBR=0.001;CBZ=0.323;QBR=-0.012;QBZ=-3.579;MBR=0.238;MSR=-0.009;MBZ=74.054;IOR=0.308;IOZ=-23.314;IOH=0.139;IOD=0.137;AOI=-122.694;AOZ=-99.380;ABE=0.878;ABZ=0.000;BCS=-11285.469;FIC=1.000;LQR=0.033;MQ0=0.000;MQ10=0.810;MQ20=0.849;MQ30=0.956;MENDEL=2;SVM=-0.68927678;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569803	rs150050719	G	A	0.0	SVM	NS=461;AF=0.994;AC=915;s50=0.98;LBS=930,772,154,19,559,363,88,11;OBS=44490,56797,20,6,1222,1135,23,2;STR=0.024;STZ=7.657;CBR=-0.034;CBZ=-11.049;QBR=0.188;QBZ=60.585;MBR=-0.330;MSR=-0.024;MBZ=-106.125;IOR=0.110;IOZ=-20.311;IOH=0.000;IOD=-0.000;AOI=-5769.869;AOZ=-5749.558;ABE=0.104;ABZ=-10.372;BCS=-558928.474;FIC=0.999;LQR=0.025;MQ0=0.000;MQ10=0.832;MQ20=0.878;MQ30=0.971;MENDEL=2;SVM=-1.0918339;AN=922;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND1P23|unprocessed_pseudogene|NON_CODING|ENST00000416931|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569815	.	G	A	0.0	SVM	NS=462;AF=0.008;AC=8;s50=0.99;LBS=228,615,219,319,2340,5328,160,324;OBS=612,1152,23,26,28231,40623,19,41;STR=0.020;STZ=5.316;CBR=-0.008;CBZ=-2.043;QBR=0.029;QBZ=7.679;MBR=0.313;MSR=-0.022;MBZ=83.181;IOR=0.191;IOZ=-21.451;IOH=0.000;IOD=-0.002;AOI=-113.227;AOZ=-91.776;ABE=1.000;ABZ=1.030;BCS=-8995.087;FIC=1.000;LQR=0.108;MQ0=0.000;MQ10=0.852;MQ20=0.889;MQ30=0.972;MENDEL=0;SVM=-0.8854013;AN=924;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569837	.	A	G	0.0	SVM	NS=464;AF=0.001;AC=1;s50=1.00;LBS=1310,2630,152,27,94,43,97,15;OBS=19342,49602,73,48,294,26,125,12;STR=-0.096;STZ=-25.259;CBR=0.078;CBZ=20.498;QBR=-0.121;QBZ=-31.913;MBR=-0.007;MSR=-0.027;MBZ=-1.787;IOR=0.316;IOZ=-23.410;IOH=0.000;IOD=-0.004;AOI=-32.650;AOZ=-9.239;ABE=0.595;ABZ=2.469;BCS=-324.312;FIC=-0.036;LQR=0.056;MQ0=0.000;MQ10=0.859;MQ20=0.891;MQ30=0.971;MENDEL=0;SVM=-0.36713132;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569849	.	G	A	0.0	SVM	NS=464;AF=0.004;AC=4;s50=1.00;LBS=54,53,65,41,2012,2771,26,37;OBS=314,764,5,1,28084,64292,2,4;STZ=0.003;STZ=0.891;CBZ=-0.008;CBZ=-2.364;QBZ=0.027;QBZ=8.135;MBR=0.223;MSR=-0.017;MBZ=68.139;IOZ=0.020;IOH=-24.581;IOD=0.457;IOD=0.457;AOZ=-75.243;AOZ=-50.662;ABZ=0.686;ABZ=0.000;BCS=-4954.643;FIC=1.000;LQR=0.050;MQ10=0.000;MQ10=0.883;MQ20=0.908;MQ30=0.970;MENDEL=1;SVM=-0.52203682;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569851	.	C	T	0.0	SVM	NS=464;AF=0.004;AC=4;s50=1.00;LBS=16,24,553,1144,4,24,37,54;OBS=0,6,28078,64250,1,1,305,582;STR=-0.008;STZ=-2.572;CBR=-0.009;CBZ=-2.737;QBR=-0.001;QBZ=-0.185;MBR=0.203;MSR=-0.011;MBZ=62.037;IOR=0.017;IOZ=-21.589;IOH=0.350;IOD=0.350;AOI=-69.047;AOZ=-47.458;ABE=0.741;ABZ=0.000;BCS=-4148.181;FIC=1.000;LQR=0.019;MQ0=0.000;MQ10=0.886;MQ20=0.911;MQ30=0.970;MENDEL=1;SVM=-0.43624379;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569874	rs139172334	C	T	0.0	SVM	NS=460;AF=1.000;AC=916;s50=0.98;LBS=28,420,155,232,14,290,1383,12290;OBS=5,23,908,1544,1,38,49632,83900;STZ=-0.000;STZ=-0.134;CBZ=-0.003;CBZ=-1.176;QBZ=-0.015;QBZ=-5.656;MBR=-0.538;MSR=-0.025;MBZ=-198.474;IOZ=0.078;IOH=-28.135;IOD=1.000;IOD=1.000;AOZ=-5521.063;AOZ=-5492.928;ABZ=0.500;ABZ=0.000;BCS=-700253.435;FIC=-nan;LQR=0.094;MQ10=0.000;MQ10=0.908;MQ20=0.928;MQ30=0.975;MENDEL=1;SVM=-0.22645139;AN=920;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569878	rs142975418	C	G	0.0	SVM	NS=460;AF=1.000;AC=916;s50=0.98;LBS=87,16,261,46,2916,1714,63,14;OBS=16,20,946,1711,52992,99247,17,8;STR=0.002;STZ=0.859;CBR=0.003;CBZ=1.153;QBR=0.006;QBZ=2.284;MBR=-0.552;MSR=-0.012;MBZ=-217.315;IOR=0.073;IOZ=-27.768;IOH=1.000;IOD=1.000;AOI=-6368.909;AOZ=-6341.141;ABE=0.500;ABZ=0.000;BCS=-813408.727;FIC=-nan;LQR=0.031;MQ0=0.000;MQ10=0.918;MQ20=0.936;MQ30=0.978;MENDEL=1;SVM=-0.098744731;AN=920;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569926	rs148804033	A	G	0.0	SVM	NS=464;AF=0.012;AC=12;s50=1.00;LBS=1366,1191,30,32,117,166,20,31;OBS=22182,22062,11,1,1572,1299,47,5;STR=-0.022;STZ=-4.796;CBR=0.009;CBZ=1.880;QBR=-0.004;QBZ=-0.910;MBR=0.359;MSR=-0.022;MBZ=77.830;IOR=0.194;IOZ=-16.241;IOH=0.000;IOD=-0.001;AOI=-216.454;AOZ=-200.212;ABE=1.000;ABZ=5.800;BCS=-14927.933;FIC=1.000;LQR=0.057;MQ0=0.000;MQ10=0.814;MQ20=0.842;MQ30=0.953;MENDEL=1;SVM=-0.50003492;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.7|Mt_tRNA_pseudogene|NON_CODING|ENST00000485393|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	569983	rs145414098	G	A	0.0	SVM	NS=464;AF=0.997;AC=915;s50=0.98;LBS=86,153,25,20,147,204,16,12;OBS=50808,68303,1,8,1461,2028,3,14;STR=-0.003;STZ=-0.918;CBR=-0.004;CBZ=-1.376;QBR=0.132;QBZ=46.096;MBR=-0.780;MSR=0.003;MBZ=-273.063;IOR=0.060;IOZ=-20.192;IOH=0.000;IOD=-0.000;AOI=-6822.676;AOZ=-6802.484;ABE=0.138;ABZ=-21.905;BCS=-655750.317;FIC=-0.604;LQR=0.005;MQ0=0.000;MQ10=0.951;MQ20=0.962;MQ30=0.983;MENDEL=1;SVM=-0.54622206;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570007	.	C	T	0.0	SVM	NS=464;AF=0.004;AC=4;s50=1.00;LBS=3,6,177,675,0,10,8,12;OBS=0,6,16017,35314,1,0,236,505;STR=-0.002;STZ=-0.391;CBR=0.035;CBZ=7.989;QBR=-0.009;QBZ=-1.975;MBR=0.251;MSR=-0.031;MBZ=57.196;IOR=0.027;IOZ=-15.983;IOH=0.000;IOD=-0.000;AOI=-69.463;AOZ=-53.480;ABE=1.000;ABZ=0.993;BCS=-3483.366;FIC=1.000;LQR=0.016;MQ0=0.000;MQ10=0.905;MQ20=0.922;MQ30=0.971;MENDEL=0;SVM=-0.65453765;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.2|Mt_tRNA_pseudogene|NON_CODING|ENST00000482877|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570026	rs148603765	G	A	0.0	SVM	NS=463;AF=0.006;AC=6;s50=1.00;LBS=10,73,3,6,181,1258,6,9;OBS=223,513,0,1,9016,25123,2,12;STR=-0.013;STZ=-2.383;CBR=0.015;CBZ=2.804;QBR=-0.001;QBZ=-0.110;MBR=0.243;MSR=-0.025;MBZ=45.335;IOR=0.084;IOZ=-12.771;IOH=0.002;IOD=0.001;AOI=-78.742;AOZ=-65.970;ABE=0.998;ABZ=7.104;BCS=-3777.458;FIC=0.999;LQR=0.042;MQ0=0.000;MQ10=0.879;MQ20=0.895;MQ30=0.963;MENDEL=0;SVM=-0.58636521;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570076	rs144125246	T	C	0.0	SVM	NS=374;AF=0.983;AC=725;s50=0.77;LBS=23,8,1135,819,9,9,113,233;OBS=2,8,45867,66798,1,4,785,1371;STZ=-0.012;STZ=-4.023;CBZ=0.023;CBZ=7.719;QBZ=0.082;QBZ=27.875;MBR=-0.385;MSR=-0.076;MBZ=-130.558;IOZ=0.030;IOH=-22.210;IOD=0.000;IOD=-0.000;AOZ=-5898.016;AOZ=-5875.807;ABZ=0.112;ABZ=-13.248;BCS=-613789.135;FIC=1.000;LQR=0.020;MQ10=0.000;MQ10=0.821;MQ20=0.863;MQ30=0.952;MENDEL=2;SVM=-0.94363594;AN=748;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570079	rs149970977	C	T	0.0	SVM	NS=375;AF=0.982;AC=726;s50=0.77;LBS=19,2208,102,184,12,57,1407,18102;OBS=7,59,821,1276,1,10,45143,41509;STR=-0.039;STZ=-11.721;CBR=0.013;CBZ=3.944;QBR=-0.016;QBZ=-4.736;MBR=-0.387;MSR=-0.071;MBZ=-115.299;IOR=0.106;IOZ=-25.551;IOH=0.000;IOD=-0.001;AOI=-3953.201;AOZ=-3927.650;ABE=0.125;ABZ=-11.709;BCS=-443483.304;FIC=0.889;LQR=0.182;MQ0=0.000;MQ10=0.799;MQ20=0.848;MQ30=0.945;MENDEL=2;SVM=-0.7139596;AN=750;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570085	.	C	T	0.0	SVM	NS=420;AF=0.002;AC=2;s50=0.89;LBS=76,12,2169,430,23,25,123,60;OBS=24,2,39344,47781,2,4,273,332;STR=0.000;STZ=0.013;CBR=-0.003;CBZ=-0.940;QBR=-0.028;QBZ=-8.198;MBR=0.127;MSR=-0.065;MBZ=37.625;IOR=0.081;IOZ=-19.079;IOH=0.712;IOD=0.712;AOI=-54.742;AOZ=-35.662;ABE=0.584;ABZ=0.000;BCS=-2794.412;FIC=1.000;LQR=0.031;MQ0=0.000;MQ10=0.734;MQ20=0.796;MQ30=0.931;MENDEL=0;SVM=-1.4569723;AN=840;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570089	rs147698901	C	T	0.0	SVM	NS=415;AF=0.743;AC=607;s50=0.84;LBS=37,158,556,1127,17,174,1367,2058;OBS=3,5,15767,14684,2,22,20412,18878;STZ=-0.002;STZ=-0.456;CBZ=0.016;CBZ=4.291;QBZ=-0.098;QBZ=-25.857;MBR=-0.764;MSR=-0.016;MBZ=-201.771;IOZ=0.074;IOH=-20.054;IOD=0.000;IOD=-0.000;AOZ=-2286.684;AOZ=-2266.629;ABZ=0.199;ABZ=-8.759;BCS=-200763.883;FIC=0.985;LQR=0.068;MQ10=0.000;MQ10=0.634;MQ20=0.713;MQ30=0.908;MENDEL=19;SVM=-0.70053132;AN=830;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570094	rs142395122	G	A	0.0	SVM	NS=411;AF=0.840;AC=682;s50=0.84;LBS=1967,2113,164,221,834,1241,121,155;OBS=24620,18040,12,39,7843,3975,16,30;STR=0.073;STZ=16.961;CBR=-0.046;CBZ=-10.744;QBR=0.057;QBZ=13.243;MBR=-0.632;MSR=-0.050;MBZ=-147.416;IOR=0.210;IOZ=-19.086;IOH=0.000;IOD=-0.002;AOI=-2590.040;AOZ=-2570.954;ABE=0.214;ABZ=-7.015;BCS=-219989.650;FIC=0.978;LQR=0.102;MQ0=0.000;MQ10=0.701;MQ20=0.782;MQ30=0.907;MENDEL=8;SVM=-1.2459249;AN=822;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570097	.	A	G	0.0	SVM	NS=373;AF=0.988;AC=723;s50=0.75;LBS=181,393,109,179,2109,3702,73,170;OBS=842,860,10,26,27712,21990,13,35;STR=-0.023;STZ=-5.132;CBR=-0.004;CBZ=-0.858;QBR=0.053;QBZ=11.991;MBR=-0.336;MSR=-0.050;MBZ=-76.193;IOR=0.201;IOZ=-18.247;IOH=0.003;IOD=0.001;AOI=-3149.159;AOZ=-3130.913;ABE=0.209;ABZ=-10.415;BCS=-252899.974;FIC=0.685;LQR=0.110;MQ0=0.000;MQ10=0.743;MQ20=0.804;MQ30=0.920;MENDEL=2;SVM=-0.56079449;AN=746;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570154	.	C	T	0.0	SVM	NS=463;AF=0.010;AC=10;s50=1.00;LBS=3,4,267,423,1,1,78,62;OBS=0,1,21953,30691,0,0,617,1133;STR=0.023;STZ=5.377;CBR=-0.006;CBZ=-1.372;QBR=0.005;QBZ=1.120;MBR=0.392;MSR=0.021;MBZ=91.344;IOR=0.003;IOZ=-19.103;IOH=0.001;IOD=0.001;AOI=-125.780;AOZ=-106.677;ABE=1.000;ABZ=5.253;BCS=-8787.047;FIC=1.000;LQR=0.015;MQ0=0.000;MQ10=0.921;MQ20=0.937;MQ30=0.975;MENDEL=0;SVM=-0.69542027;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570166	.	A	G	0.0	SVM	NS=463;AF=0.002;AC=2;s50=1.00;LBS=2222,2324,333,61,212,29,159,42;OBS=18379,32844,18,8,97,187,9,5;STR=0.003;STZ=0.586;CBR=0.008;CBZ=1.820;QBR=0.013;QBZ=2.986;MBR=0.140;MSR=0.009;MBZ=31.771;IOR=0.111;IOZ=-17.918;IOH=0.000;IOD=-0.001;AOI=-34.958;AOZ=-17.040;ABE=1.000;ABZ=3.712;BCS=-1243.266;FIC=1.000;LQR=0.085;MQ0=0.000;MQ10=0.911;MQ20=0.929;MQ30=0.960;MENDEL=0;SVM=-0.87731907;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570178	rs146675873	G	A	0.0	SVM	NS=463;AF=0.978;AC=897;s50=0.97;LBS=58,166,16,14,158,354,11,23;OBS=35157,48631,3,5,1663,1862,0,5;STZ=0.021;STZ=6.147;CBZ=0.010;CBZ=2.976;QBZ=0.125;QBZ=37.063;MBR=-0.781;MSR=-0.007;MBZ=-230.777;IOZ=0.041;IOH=-17.477;IOD=0.000;IOD=-0.000;AOZ=-5555.882;AOZ=-5538.406;ABZ=0.168;ABZ=-29.043;BCS=-452436.333;FIC=0.197;LQR=0.008;MQ10=0.000;MQ10=0.935;MQ20=0.948;MQ30=0.972;MENDEL=2;SVM=-0.79624437;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570199	.	C	T	0.0	SVM	NS=464;AF=0.010;AC=10;s50=1.00;LBS=8,3,915,216,2,2,67,49;OBS=0,9,26694,35164,1,3,973,1120;STR=-0.012;STZ=-3.030;CBR=-0.004;CBZ=-0.924;QBR=-0.043;QBZ=-10.787;MBR=0.359;MSR=-0.023;MBZ=90.875;IOR=0.046;IOZ=-16.371;IOH=0.000;IOD=-0.000;AOI=-163.800;AOZ=-147.429;ABE=1.000;ABZ=0.121;BCS=-10751.008;FIC=1.000;LQR=0.019;MQ0=0.000;MQ10=0.906;MQ20=0.925;MQ30=0.967;MENDEL=1;SVM=-0.55010969;AN=928;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570231	.	T	C	0.0	SVM	NS=463;AF=0.004;AC=4;s50=1.00;LBS=13,59,24,95,12,42,1359,2476;OBS=2,32,896,1053,2,26,21961,23936;STR=0.007;STZ=1.623;CBR=-0.008;CBZ=-1.649;QBR=0.084;QBZ=18.404;MBR=0.251;MSR=-0.030;MBZ=54.970;IOR=0.153;IOZ=-18.494;IOH=0.000;IOD=-0.001;AOI=-137.918;AOZ=-119.424;ABE=1.000;ABZ=4.418;BCS=-10157.550;FIC=1.000;LQR=0.076;MQ0=0.000;MQ10=0.833;MQ20=0.857;MQ30=0.943;MENDEL=1;SVM=-0.7378061;AN=926;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570244	.	G	A	0.0	SVM	NS=459;AF=0.002;AC=2;s50=0.99;LBS=51,27,25,5,1794,812,50,5;OBS=348,580,1,3,21269,37876,6,22;STR=-0.004;STZ=-0.978;CBR=0.016;CBZ=4.007;QBR=-0.001;QBZ=-0.260;MBR=0.137;MSR=-0.054;MBZ=33.459;IOR=0.080;IOZ=-19.218;IOH=0.000;IOD=-0.000;AOI=-74.162;AOZ=-54.944;ABE=1.000;ABZ=1.689;BCS=-4295.572;FIC=1.000;LQR=0.043;MQ0=0.000;MQ10=0.811;MQ20=0.837;MQ30=0.934;MENDEL=0;SVM=-1.0912056;AN=918;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570247	.	T	C	0.0	SVM	NS=458;AF=0.015;AC=14;s50=0.99;LBS=53,96,129,140,28,94,1273,1255;OBS=8,8,3802,5079,1,6,18463,31294;STZ=-0.042;STZ=-10.205;CBZ=0.002;CBZ=0.550;QBZ=0.087;QBZ=21.090;MBR=0.639;MSR=-0.050;MBZ=154.840;IOZ=0.067;IOH=-17.956;IOD=0.000;IOD=-0.000;AOZ=-589.983;AOZ=-572.027;ABZ=0.996;ABZ=4.901;BCS=-47461.650;FIC=1.000;LQR=0.046;MQ10=0.000;MQ10=0.796;MQ20=0.823;MQ30=0.918;MENDEL=2;SVM=-0.97662033;AN=916;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570265	.	T	C	0.0	SVM	NS=458;AF=0.015;AC=14;s50=0.99;LBS=6,9,159,311,2,28,176,1057;OBS=5,14,2819,4508,0,16,13100,28786;STR=-0.055;STZ=-12.155;CBR=0.023;CBZ=5.173;QBR=-0.052;QBZ=-11.521;MBR=0.642;MSR=-0.064;MBZ=142.437;IOR=0.120;IOZ=-16.015;IOH=0.000;IOD=-0.001;AOI=-542.417;AOZ=-526.403;ABE=0.980;ABZ=10.715;BCS=-38239.978;FIC=1.000;LQR=0.033;MQ0=0.000;MQ10=0.795;MQ20=0.827;MQ30=0.916;MENDEL=2;SVM=-0.97017297;AN=916;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570557	.	A	G	0.0	SVM	NS=239;AF=0.006;AC=3;s50=0.50;LBS=63,31,1,1,14,5,6,2;OBS=529,628,1,0,39,50,0,0;STR=0.010;STZ=0.337;CBR=0.038;CBZ=1.334;QBR=-0.055;QBZ=-1.938;MBR=-0.159;MSR=0.013;MBZ=-5.630;IOR=0.101;IOZ=-2.986;IOH=0.017;IOD=0.016;AOI=-37.452;AOZ=-34.466;ABE=0.523;ABZ=0.679;BCS=-73.086;FIC=-3.076;LQR=0.083;MQ0=0.000;MQ10=0.098;MQ20=0.368;MQ30=0.599;MENDEL=0;SVM=-0.49387168;AN=478;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570578	.	T	G	0.0	SVM	NS=328;AF=0.002;AC=1;s50=0.68;LBS=1,10,3,5,1,10,31,46;OBS=2,7,33,25,15,14,553,547;STR=-0.004;STZ=-0.151;CBR=0.022;CBZ=0.751;QBR=0.021;QBZ=0.717;MBR=0.061;MSR=-0.023;MBZ=2.038;IOR=0.906;IOZ=-2.491;IOH=0.002;IOD=-0.058;AOI=-0.639;AOZ=1.852;ABE=0.564;ABZ=1.347;BCS=-453.100;FIC=-0.753;LQR=0.072;MQ0=0.000;MQ10=0.119;MQ20=0.362;MQ30=0.640;MENDEL=0;SVM=-1.6508629;AN=656;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570638	rs146992644	T	C	0.0	SVM	NS=195;AF=0.041;AC=16;s50=0.41;LBS=8,3,26,59,1,4,281,245;OBS=1,13,1203,782,0,4,4043,3305;STZ=-0.046;STZ=-4.445;CBZ=-0.007;CBZ=-0.706;QBZ=0.084;QBZ=8.143;MBR=-0.079;MSR=-0.011;MBZ=-7.667;IOZ=0.255;IOH=-7.211;IOD=0.002;IOD=-0.000;AOZ=-319.661;AOZ=-312.450;ABZ=0.716;ABZ=36.538;BCS=-5829.801;FIC=-4.016;LQR=0.061;MQ10=0.000;MQ10=0.071;MQ20=0.420;MQ30=0.713;MENDEL=0;SVM=-0.90403145;AN=390;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	570921	.	A	G	0.0	SVM	NS=252;AF=0.004;AC=2;s50=0.53;LBS=144,63,1,1,22,28,0,2;OBS=3441,2642,0,3,411,298,0,0;STR=-0.009;STZ=-0.708;CBR=0.032;CBZ=2.653;QBR=-0.091;QBZ=-7.503;MBR=-0.246;MSR=-0.038;MBZ=-20.311;IOR=0.074;IOZ=-6.148;IOH=0.000;IOD=-0.000;AOI=-139.362;AOZ=-133.214;ABE=0.646;ABZ=12.559;BCS=-703.963;FIC=-22.818;LQR=0.036;MQ0=0.000;MQ10=0.102;MQ20=0.466;MQ30=0.895;MENDEL=0;SVM=-1.4694401;AN=504;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||MTND2P28|unprocessed_pseudogene|NON_CODING|ENST00000457540|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.3|Mt_tRNA_pseudogene|NON_CODING|ENST00000479998|),UPSTREAM(LOW||||AC114498.4|Mt_tRNA_pseudogene|NON_CODING|ENST00000491051|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|),UPSTREAM(LOW||||AC114498.8|Mt_tRNA_pseudogene|NON_CODING|ENST00000469752|),UPSTREAM(LOW||||hsa-mir-1977|miRNA|NON_CODING|ENST00000459059|)
1	572553	.	A	G	0.0	SVM	NS=221;AF=0.007;AC=3;s50=0.47;LBS=306,421,56,31,57,64,7,2;OBS=2708,3761,814,1172,107,217,8,0;STR=0.038;STZ=3.137;CBR=0.020;CBZ=1.660;QBR=-0.142;QBZ=-11.723;MBR=-0.220;MSR=-0.031;MBZ=-18.108;IOR=0.984;IOZ=-4.423;IOH=0.175;IOD=-0.118;AOI=100.134;AOZ=104.557;ABE=0.548;ABZ=1.911;BCS=-10785.457;FIC=-5.390;LQR=0.111;MQ0=0.000;MQ10=0.163;MQ20=0.650;MQ30=1.192;MENDEL=0;SVM=-1.9373043;AN=442;EFF=DOWNSTREAM(MODIFIER||||AC114498.1|Mt_tRNA_pseudogene|NON_CODING|ENST00000497625|),DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.6|unprocessed_pseudogene|NON_CODING|ENST00000414273|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||AC114498.5|Mt_tRNA_pseudogene|NON_CODING|ENST00000485927|)
1	573215	.	C	T	0.0	SVM	NS=111;AF=0.009;AC=2;s50=0.23;LBS=9,16,163,395,6,29,353,212;OBS=1,3,5926,4197,2,4,2121,1626;STR=0.017;STZ=2.051;CBR=0.037;CBZ=4.345;QBR=-0.090;QBZ=-10.641;MBR=-0.116;MSR=-0.046;MBZ=-13.690;IOR=0.123;IOZ=-8.445;IOH=0.001;IOD=0.000;AOI=-519.780;AOZ=-511.334;ABE=0.647;ABZ=34.376;BCS=-11723.526;FIC=-30.073;LQR=0.075;MQ0=0.000;MQ10=0.114;MQ20=0.369;MQ30=0.900;MENDEL=0;SVM=-1.5335738;AN=222;EFF=DOWNSTREAM(MODIFIER||||AC114498.6|Mt_tRNA_pseudogene|NON_CODING|ENST00000484771|),DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),DOWNSTREAM(MODIFIER||||RP5-857K21.14|unprocessed_pseudogene|NON_CODING|ENST00000467115|),DOWNSTREAM(MODIFIER||||RP5-857K21.7|unprocessed_pseudogene|NON_CODING|ENST00000427426|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	574151	rs74047006	A	T	0.0	SVM	NS=53;AF=0.048;AC=5;s50=0.10;LBS=300,614,37,44,35,50,54,60;OBS=3633,3011,3,5,6,11,127,140;STR=0.028;STZ=2.289;CBR=0.026;CBZ=2.171;QBR=-0.063;QBZ=-5.248;MBR=0.032;MSR=0.047;MBZ=2.625;IOR=0.352;IOZ=-6.722;IOH=0.000;IOD=-0.003;AOI=-49.654;AOZ=-42.932;ABE=0.551;ABZ=3.155;BCS=-870.587;FIC=0.330;LQR=0.129;MQ0=0.000;MQ10=0.241;MQ20=0.479;MQ30=0.638;MENDEL=0;SVM=-2.3108607;AN=106;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.10|unprocessed_pseudogene|NON_CODING|ENST00000514057|),DOWNSTREAM(MODIFIER||||RP5-857K21.11|unprocessed_pseudogene|NON_CODING|ENST00000416718|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	580113	.	G	A	0.0	SVM	NS=75;AF=0.067;AC=10;s50=0.16;LBS=56,76,1,2,81,141,2,3;OBS=2124,1495,0,1,4008,2930,1,0;STR=-0.009;STZ=-0.909;CBR=0.023;CBZ=2.355;QBR=0.011;QBZ=1.116;MBR=0.133;MSR=-0.006;MBZ=13.697;IOR=0.039;IOZ=-7.048;IOH=0.000;IOD=-0.000;AOI=-601.334;AOZ=-594.286;ABE=0.628;ABZ=22.812;BCS=-14023.766;FIC=-3.746;LQR=0.032;MQ0=0.000;MQ10=0.124;MQ20=0.561;MQ30=0.826;MENDEL=0;SVM=-1.6998432;AN=150;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	581145	.	G	T	0.0	SVM	NS=289;AF=0.002;AC=1;s50=0.61;LBS=10,3,7,2,223,66,56,14;OBS=2,0,3,1,3659,4664,452,624;STR=0.013;STZ=1.213;CBR=-0.052;CBZ=-4.998;QBR=-0.034;QBZ=-3.344;MBR=-0.233;MSR=0.042;MBZ=-22.613;IOR=0.113;IOZ=-6.878;IOH=0.000;IOD=-0.000;AOI=-187.441;AOZ=-180.563;ABE=0.645;ABZ=16.421;BCS=-1837.745;FIC=-57.270;LQR=0.037;MQ0=0.000;MQ10=0.097;MQ20=0.530;MQ30=0.813;MENDEL=0;SVM=-1.3802953;AN=578;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	586195	rs55870831	G	T	0.0	SVM	NS=205;AF=0.005;AC=2;s50=0.43;LBS=6,8,1,6,147,428,34,72;OBS=0,1,0,2,3826,4519,812,992;STR=0.006;STZ=0.645;CBR=0.022;CBZ=2.259;QBR=-0.022;QBZ=-2.211;MBR=-0.262;MSR=0.030;MBZ=-26.360;IOR=0.045;IOZ=-8.004;IOH=0.000;IOD=-0.000;AOI=-269.748;AOZ=-261.745;ABE=0.666;ABZ=23.086;BCS=-4206.913;FIC=-30.518;LQR=0.063;MQ0=0.000;MQ10=0.089;MQ20=0.340;MQ30=0.620;MENDEL=0;SVM=-0.3363567;AN=410;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	586206	.	G	A	0.0	SVM	NS=202;AF=0.005;AC=2;s50=0.43;LBS=43,65,8,7,169,95,7,7;OBS=549,1033,0,0,3356,5084,1,0;STR=0.038;STZ=3.782;CBR=0.055;CBZ=5.485;QBR=-0.111;QBZ=-11.114;MBR=-0.266;MSR=-0.006;MBZ=-26.643;IOR=0.019;IOZ=-7.171;IOH=0.000;IOD=-0.000;AOI=-262.915;AOZ=-255.744;ABE=0.675;ABZ=25.358;BCS=-3451.179;FIC=-29.882;LQR=0.036;MQ0=0.000;MQ10=0.099;MQ20=0.279;MQ30=0.588;MENDEL=0;SVM=-0.57002184;AN=404;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	589036	.	G	T	0.0	SVM	NS=84;AF=0.006;AC=1;s50=0.17;LBS=1,3,1,0,45,31,16,14;OBS=5,0,0,0,1711,411,245,101;STR=0.085;STZ=4.199;CBR=0.007;CBZ=0.354;QBR=-0.064;QBZ=-3.183;MBR=-0.072;MSR=-0.067;MBZ=-3.593;IOR=0.287;IOZ=-3.517;IOH=0.000;IOD=-0.002;AOI=-115.989;AOZ=-112.472;ABE=0.472;ABZ=-1.523;BCS=-1178.521;FIC=-9.142;LQR=0.041;MQ0=0.000;MQ10=0.203;MQ20=0.555;MQ30=0.832;MENDEL=0;SVM=-2.5988139;AN=168;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	590190	.	C	T	0.0	SVM	NS=200;AF=0.010;AC=4;s50=0.42;LBS=1,1,273,75,2,3,85,99;OBS=1,2,4486,1980,0,2,1057,417;STZ=-0.020;STZ=-1.751;CBZ=-0.012;CBZ=-1.065;QBZ=-0.077;QBZ=-6.884;MBR=-0.352;MSR=-0.001;MBZ=-31.370;IOZ=0.095;IOH=-6.892;IOD=0.001;IOD=0.000;AOZ=-253.597;AOZ=-246.705;ABZ=0.625;ABZ=12.123;BCS=-3829.084;FIC=-11.520;LQR=0.063;MQ10=0.000;MQ10=0.135;MQ20=0.577;MQ30=0.945;MENDEL=0;SVM=-2.0103286;AN=400;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	591088	.	A	C	0.0	SVM	NS=176;AF=0.017;AC=6;s50=0.37;LBS=63,67,9,18,0,0,0,0;OBS=3662,2233,612,295,2,1,0,0;STR=-0.038;STZ=-3.098;CBR=-0.002;CBZ=-0.134;QBR=-0.026;QBZ=-2.126;MBR=-0.071;MSR=-0.018;MBZ=-5.821;IOR=0.084;IOZ=-5.741;IOH=0.000;IOD=-0.000;AOI=-188.563;AOZ=-182.823;ABE=0.632;ABZ=11.728;BCS=-1433.344;FIC=-7.361;LQR=0.023;MQ0=0.000;MQ10=0.091;MQ20=0.491;MQ30=0.911;MENDEL=0;SVM=-2.2486192;AN=352;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	594782	.	G	A	0.0	SVM	NS=95;AF=0.010;AC=2;s50=0.21;LBS=98,201,12,3,233,90,3,7;OBS=603,806,2,2,2195,3052,1,2;STR=-0.008;STZ=-0.653;CBR=-0.007;CBZ=-0.547;QBR=-0.137;QBZ=-11.165;MBR=-0.015;MSR=-0.008;MBZ=-1.199;IOR=0.164;IOZ=-5.979;IOH=0.002;IOD=0.001;AOI=-277.275;AOZ=-271.296;ABE=0.529;ABZ=3.364;BCS=-3663.797;FIC=-22.774;LQR=0.085;MQ0=0.000;MQ10=0.124;MQ20=0.502;MQ30=0.905;MENDEL=0;SVM=-3.0338894;AN=190;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	595931	.	T	C	0.0	SVM	NS=172;AF=0.012;AC=4;s50=0.36;LBS=1,3,11,33,0,1,122,194;OBS=0,1,268,430,0,0,2060,2510;STR=0.046;STZ=3.304;CBR=-0.013;CBZ=-0.915;QBR=0.032;QBZ=2.316;MBR=-0.012;MSR=0.003;MBZ=-0.838;IOR=0.030;IOZ=-5.670;IOH=0.001;IOD=0.000;AOI=-148.401;AOZ=-142.730;ABE=0.682;ABZ=17.837;BCS=-987.797;FIC=-10.350;LQR=0.064;MQ0=0.000;MQ10=0.079;MQ20=0.550;MQ30=0.821;MENDEL=0;SVM=-1.8650892;AN=344;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	596356	.	G	A	0.0	SVM	NS=166;AF=0.101;AC=34;s50=0.35;LBS=30,30,7,0,161,154,5,1;OBS=256,598,1,1,2200,3780,1,2;STR=0.047;STZ=3.871;CBR=-0.012;CBZ=-1.016;QBR=-0.013;QBZ=-1.094;MBR=-0.033;MSR=-0.048;MBZ=-2.717;IOR=0.106;IOZ=-6.493;IOH=0.000;IOD=-0.000;AOI=-158.448;AOZ=-151.955;ABE=0.568;ABZ=5.834;BCS=-1680.036;FIC=-0.547;LQR=0.052;MQ0=0.000;MQ10=0.083;MQ20=0.559;MQ30=0.828;MENDEL=0;SVM=-2.0016001;AN=332;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	597472	.	G	T	0.0	SVM	NS=266;AF=0.002;AC=1;s50=0.57;LBS=1,1,3,1,60,43,18,7;OBS=0,0,0,2,1812,4115,173,532;STR=0.040;STZ=3.290;CBR=-0.044;CBZ=-3.620;QBR=-0.089;QBZ=-7.268;MBR=-0.123;MSR=0.056;MBZ=-10.007;IOR=0.061;IOZ=-5.569;IOH=0.000;IOD=-0.000;AOI=-151.902;AOZ=-146.333;ABE=0.626;ABZ=10.976;BCS=-1141.442;FIC=-43.006;LQR=0.019;MQ0=0.000;MQ10=0.092;MQ20=0.593;MQ30=0.906;MENDEL=0;SVM=-1.7664604;AN=532;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	599488	.	G	T	0.0	SVM	NS=132;AF=0.004;AC=1;s50=0.28;LBS=11,5,7,4,194,134,85,93;OBS=0,7,3,3,2673,7533,1232,3115;STR=-0.022;STZ=-2.684;CBR=0.032;CBZ=3.813;QBR=-0.004;QBZ=-0.433;MBR=-0.160;MSR=0.069;MBZ=-19.314;IOR=0.140;IOZ=-8.936;IOH=0.001;IOD=0.000;AOI=-571.896;AOZ=-562.960;ABE=0.609;ABZ=22.551;BCS=-14650.503;FIC=-62.770;LQR=0.034;MQ0=0.000;MQ10=0.085;MQ20=0.617;MQ30=0.937;MENDEL=0;SVM=-2.395356;AN=264;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	600274	.	A	C	0.0	SVM	NS=256;AF=0.002;AC=1;s50=0.53;LBS=227,303,10,10,3,1,5,6;OBS=1812,3791,884,2288,0,0,2,6;STR=0.047;STZ=4.358;CBR=-0.010;CBZ=-0.972;QBR=0.207;QBZ=19.429;MBR=-0.731;MSR=-0.008;MBZ=-68.498;IOR=0.143;IOZ=-6.929;IOH=0.000;IOD=-0.001;AOI=-533.691;AOZ=-526.762;ABE=0.364;ABZ=-24.146;BCS=-14083.602;FIC=-49.000;LQR=0.059;MQ0=0.000;MQ10=0.425;MQ20=0.707;MQ30=0.943;MENDEL=0;SVM=-1.6134203;AN=512;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	600477	.	C	T	0.0	PASS	NS=248;AF=0.006;AC=3;s50=0.53;LBS=1,1,145,115,3,1,13,6;OBS=0,0,2435,5189,1,1,342,763;STZ=0.007;STZ=0.650;CBZ=0.002;CBZ=0.216;QBZ=0.057;QBZ=5.336;MBR=-0.545;MSR=0.058;MBZ=-50.885;IOZ=0.044;IOH=-6.583;IOD=0.000;IOD=-0.000;AOZ=-201.057;AOZ=-194.474;ABZ=0.582;ABZ=7.678;BCS=-3844.843;FIC=-11.596;LQR=0.031;MQ10=0.000;MQ10=0.134;MQ20=0.239;MQ30=0.614;MENDEL=0;SVM=0.38502688;AN=496;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	600478	rs114979547	G	A	0.0	PASS	NS=267;AF=0.004;AC=2;s50=0.57;LBS=24,35,3,2,106,52,4,1;OBS=513,1006,0,1,2334,4859,3,8;STR=-0.011;STZ=-1.006;CBR=0.010;CBZ=0.955;QBR=-0.100;QBZ=-9.352;MBR=0.369;MSR=0.064;MBZ=34.485;IOR=0.227;IOZ=-6.379;IOH=0.001;IOD=0.000;AOI=-279.693;AOZ=-273.314;ABE=0.584;ABZ=13.654;BCS=-5580.857;FIC=-15.341;LQR=0.024;MQ0=0.000;MQ10=0.159;MQ20=0.261;MQ30=0.619;MENDEL=0;SVM=0.23688921;AN=534;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	600878	.	C	T	0.0	SVM	NS=294;AF=0.007;AC=4;s50=0.62;LBS=0,2,129,79,0,1,21,20;OBS=0,0,1384,2682,0,0,169,291;STR=-0.017;STZ=-1.168;CBR=0.007;CBZ=0.457;QBR=-0.022;QBZ=-1.447;MBR=-0.265;MSR=0.072;MBZ=-17.822;IOR=0.000;IOZ=-4.879;IOH=0.000;IOD=0.000;AOI=-114.377;AOZ=-109.497;ABE=0.628;ABZ=7.782;BCS=-773.881;FIC=-7.748;LQR=0.052;MQ0=0.000;MQ10=0.112;MQ20=0.511;MQ30=0.797;MENDEL=0;SVM=-0.84790497;AN=588;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	601165	.	C	T	0.0	SVM	NS=313;AF=0.006;AC=2;s50=0.67;LBS=2,3,30,65,1,3,23,29;OBS=1,1,2655,2483,1,0,131,156;STR=0.027;STZ=1.987;CBR=0.029;CBZ=2.121;QBR=-0.076;QBZ=-5.631;MBR=-0.170;MSR=0.014;MBZ=-12.502;IOR=0.104;IOZ=-5.078;IOH=0.001;IOD=0.001;AOI=-69.893;AOZ=-64.815;ABE=0.587;ABZ=3.187;BCS=-165.001;FIC=-4.537;LQR=0.026;MQ0=0.000;MQ10=0.084;MQ20=0.455;MQ30=0.705;MENDEL=1;SVM=-0.58210609;AN=626;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	601550	rs78266750	G	A	0.0	SVM	NS=260;AF=0.004;AC=2;s50=0.55;LBS=43,48,5,1,468,700,6,3;OBS=514,559,4,2,5070,5958,1,1;STR=-0.011;STZ=-1.212;CBR=-0.032;CBZ=-3.487;QBR=0.003;QBZ=0.291;MBR=-0.227;MSR=0.033;MBZ=-24.930;IOR=0.089;IOZ=-9.085;IOH=0.000;IOD=-0.000;AOI=-145.506;AOZ=-136.421;ABE=0.673;ABZ=18.487;BCS=-1584.542;FIC=-23.442;LQR=0.094;MQ0=0.000;MQ10=0.116;MQ20=0.400;MQ30=0.678;MENDEL=0;SVM=-0.45973821;AN=520;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	602645	.	C	T	0.0	SVM	NS=283;AF=0.003;AC=2;s50=0.60;LBS=0,1,81,117,1,1,41,14;OBS=0,3,2485,1651,0,1,253,198;STR=0.024;STZ=1.644;CBR=0.011;CBZ=0.742;QBR=-0.145;QBZ=-9.811;MBR=-0.190;MSR=-0.051;MBZ=-12.867;IOR=0.137;IOZ=-5.009;IOH=0.000;IOD=-0.001;AOI=-108.324;AOZ=-103.315;ABE=0.524;ABZ=1.319;BCS=-550.867;FIC=-19.796;LQR=0.052;MQ0=0.000;MQ10=0.091;MQ20=0.460;MQ30=0.866;MENDEL=1;SVM=-1.1394229;AN=566;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	603494	.	T	G	0.0	SVM	NS=184;AF=0.003;AC=1;s50=0.39;LBS=1,9,4,10,0,7,79,66;OBS=10,10,3,1,29,35,1968,570;STR=0.119;STZ=6.054;CBR=0.029;CBZ=1.478;QBR=-0.046;QBZ=-2.338;MBR=-0.029;MSR=-0.038;MBZ=-1.456;IOR=0.614;IOZ=-3.846;IOH=0.025;IOD=0.016;AOI=-19.177;AOZ=-15.331;ABE=0.622;ABZ=4.006;BCS=-227.211;FIC=-3.374;LQR=0.055;MQ0=0.000;MQ10=0.598;MQ20=0.757;MQ30=0.912;MENDEL=0;SVM=-2.5587987;AN=368;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	603548	.	A	G	0.0	SVM	NS=73;AF=0.027;AC=1;s50=0.15;LBS=73,17,17,1,37,4,15,0;OBS=1849,489,6,0,236,82,13,4;STR=0.039;STZ=2.011;CBR=0.008;CBZ=0.389;QBR=-0.114;QBZ=-5.867;MBR=-0.060;MSR=-0.025;MBZ=-3.111;IOR=0.656;IOZ=-3.437;IOH=0.004;IOD=-0.005;AOI=-104.112;AOZ=-100.676;ABE=0.555;ABZ=3.150;BCS=-1293.164;FIC=-1.002;LQR=0.047;MQ0=0.000;MQ10=0.660;MQ20=0.849;MQ30=0.933;MENDEL=0;SVM=-3.8018229;AN=146;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	603551	.	T	C	0.0	SVM	NS=28;AF=0.069;AC=1;s50=0.06;LBS=12,5,25,4,9,7,255,38;OBS=23,4,170,90,4,1,1428,424;STR=0.090;STZ=4.144;CBR=0.024;CBZ=1.098;QBR=0.068;QBZ=3.140;MBR=-0.056;MSR=0.000;MBZ=-2.561;IOR=0.695;IOZ=-3.699;IOH=0.025;IOD=0.010;AOI=-77.949;AOZ=-74.250;ABE=0.573;ABZ=4.264;BCS=-1163.037;FIC=0.271;LQR=0.132;MQ0=0.000;MQ10=0.669;MQ20=0.856;MQ30=0.939;MENDEL=0;SVM=-3.2354117;AN=56;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	603556	.	T	A	0.0	SVM	NS=27;AF=0.054;AC=1;s50=0.06;LBS=25,13,14,4,9,2,120,28;OBS=113,70,6,2,1,2,1170,393;STR=0.091;STZ=3.820;CBR=0.082;CBZ=3.415;QBR=-0.089;QBZ=-3.717;MBR=-0.064;MSR=0.039;MBZ=-2.692;IOR=0.507;IOZ=-3.248;IOH=0.008;IOD=0.002;AOI=-65.533;AOZ=-62.285;ABE=0.542;ABZ=2.004;BCS=-672.516;FIC=0.079;LQR=0.096;MQ0=0.001;MQ10=0.674;MQ20=0.849;MQ30=0.932;MENDEL=0;SVM=-2.6918679;AN=54;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	603598	.	C	T	0.0	SVM	NS=253;AF=0.004;AC=1;s50=0.53;LBS=4,2,128,49,3,2,33,12;OBS=1,2,3496,1238,0,1,355,156;STZ=0.030;STZ=2.145;CBZ=0.076;CBZ=5.531;QBZ=-0.258;QBZ=-18.714;MBR=-0.094;MSR=0.021;MBZ=-6.808;IOZ=0.117;IOH=-5.504;IOD=0.002;IOD=0.001;AOZ=-112.854;AOZ=-107.350;ABZ=0.609;ABZ=8.551;BCS=-811.235;FIC=-22.679;LQR=0.041;MQ10=0.000;MQ10=0.610;MQ20=0.758;MQ30=0.890;MENDEL=0;SVM=-2.3354829;AN=506;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	603630	.	G	A	0.0	SVM	NS=253;AF=0.002;AC=1;s50=0.52;LBS=10,2,7,3,130,48,6,6;OBS=128,112,2,1,1891,1046,1,1;STR=0.061;STZ=3.429;CBR=0.014;CBZ=0.792;QBR=0.016;QBZ=0.889;MBR=-0.069;MSR=-0.005;MBZ=-3.868;IOR=0.205;IOZ=-4.397;IOH=0.002;IOD=0.001;AOI=-66.727;AOZ=-62.330;ABE=0.569;ABZ=3.966;BCS=-739.850;FIC=-15.603;LQR=0.056;MQ0=0.000;MQ10=0.551;MQ20=0.724;MQ30=0.839;MENDEL=0;SVM=-2.5406926;AN=506;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	604338	.	G	A	0.0	SVM	NS=33;AF=0.015;AC=1;s50=0.07;LBS=37,25,12,3,100,45,14,1;OBS=1516,409,20,1,4853,1491,2,0;STR=-0.023;STZ=-2.051;CBR=-0.018;CBZ=-1.659;QBR=-0.072;QBZ=-6.579;MBR=-0.096;MSR=0.004;MBZ=-8.773;IOR=0.384;IOZ=-5.993;IOH=0.004;IOD=0.001;AOI=-365.431;AOZ=-359.438;ABE=0.656;ABZ=28.256;BCS=-5620.071;FIC=-18.707;LQR=0.024;MQ0=0.001;MQ10=0.777;MQ20=0.900;MQ30=0.973;MENDEL=0;SVM=-3.4834587;AN=66;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	608570	.	A	G	0.0	SVM	NS=9;AF=0.059;AC=1;s50=0.02;LBS=30,23,1,1,10,7,4,4;OBS=527,937,1,0,356,452,8,17;STR=-0.079;STZ=-3.773;CBR=0.046;CBZ=2.175;QBR=-0.022;QBZ=-1.040;MBR=-0.066;MSR=0.059;MBZ=-3.151;IOR=0.697;IOZ=-3.307;IOH=0.006;IOD=-0.005;AOI=-271.768;AOZ=-268.461;ABE=0.471;ABZ=-2.772;BCS=-3067.361;FIC=-3.623;LQR=0.030;MQ0=0.000;MQ10=0.223;MQ20=0.520;MQ30=0.836;MENDEL=0;SVM=-3.2945549;AN=18;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||RP5-857K21.12|processed_pseudogene|NON_CODING|ENST00000438434|)
1	608834	.	C	T	0.0	SVM	NS=106;AF=0.005;AC=1;s50=0.22;LBS=1,1,73,48,1,1,21,6;OBS=1,1,2017,2105,5,3,831,140;STR=-0.290;STZ=-20.678;CBR=0.079;CBZ=5.632;QBR=-0.149;QBZ=-10.630;MBR=-0.090;MSR=0.021;MBZ=-6.439;IOR=0.311;IOZ=-4.698;IOH=0.004;IOD=0.002;AOI=-240.805;AOZ=-236.107;ABE=0.584;ABZ=10.485;BCS=-2898.811;FIC=-29.872;LQR=0.028;MQ0=0.000;MQ10=0.154;MQ20=0.378;MQ30=0.798;MENDEL=0;SVM=-1.4190559;AN=212;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||RP5-857K21.12|processed_pseudogene|NON_CODING|ENST00000438434|)
1	608845	.	A	C	0.0	SVM	NS=96;AF=0.005;AC=1;s50=0.20;LBS=166,79,12,3,50,2,10,0;OBS=1725,2028,692,27,10,1,6,3;STR=-0.370;STZ=-24.761;CBR=0.486;CBZ=32.469;QBR=0.106;QBZ=7.098;MBR=0.001;MSR=-0.009;MBZ=0.079;IOR=0.483;IOZ=-4.596;IOH=0.005;IOD=0.001;AOI=-180.256;AOZ=-175.660;ABE=0.561;ABZ=6.021;BCS=-2411.251;FIC=-22.224;LQR=0.055;MQ0=0.000;MQ10=0.174;MQ20=0.409;MQ30=0.812;MENDEL=0;SVM=-1.2843093;AN=192;EFF=TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||RP5-857K21.12|processed_pseudogene|NON_CODING|ENST00000438434|)
1	632601	.	G	A	0.0	SVM	NS=292;AF=0.002;AC=1;s50=0.62;LBS=21,83,1,7,61,40,0,3;OBS=1995,911,46,25,2615,1225,0,0;STR=-0.006;STZ=-0.481;CBR=0.167;CBZ=13.748;QBR=-0.208;QBZ=-17.046;MBR=0.435;MSR=-0.068;MBZ=35.701;IOR=0.667;IOZ=-5.881;IOH=0.013;IOD=0.002;AOI=-557.004;AOZ=-551.123;ABE=0.305;ABZ=-32.688;BCS=-12411.978;FIC=-62.703;LQR=0.029;MQ0=0.000;MQ10=0.226;MQ20=0.435;MQ30=0.730;MENDEL=0;SVM=-1.0330426;AN=584;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000441245|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	632966	.	T	C	0.0	SVM	NS=2;AF=1.000;AC=4;s50=0.01;LBS=14,10,98,103,13,8,358,253;OBS=2,0,1567,1525,2,0,522,380;STZ=0.060;STZ=3.801;CBZ=-0.050;CBZ=-3.147;QBZ=0.193;QBZ=12.190;MBR=-0.070;MSR=0.002;MBZ=-4.396;IOZ=0.143;IOH=-4.904;IOD=1.000;IOD=0.999;AOZ=-734.128;AOZ=-729.225;ABZ=0.500;ABZ=0.000;BCS=-12151.096;FIC=-nan;LQR=0.169;MQ10=0.000;MQ10=0.245;MQ20=0.589;MQ30=0.905;MENDEL=0;SVM=-2.8944632;AN=4;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000441245|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	633582	.	C	T	0.0	SVM	NS=38;AF=1.000;AC=76;s50=0.08;LBS=4,1,52,75,1,2,41,48;OBS=1,2,36,58,3,1,510,600;STR=-0.041;STZ=-1.414;CBR=-0.173;CBZ=-6.003;QBR=0.478;QBZ=16.597;MBR=0.142;MSR=0.027;MBZ=4.920;IOR=0.470;IOZ=-2.768;IOH=1.000;IOD=0.994;AOI=-451.510;AOZ=-448.741;ABE=0.500;ABZ=0.000;BCS=-5593.312;FIC=-nan;LQR=0.152;MQ0=0.000;MQ10=0.323;MQ20=0.616;MQ30=0.804;MENDEL=0;SVM=-1.9548694;AN=76;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000441245|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	634458	.	A	G	0.0	SVM	NS=12;AF=0.750;AC=18;s50=0.02;LBS=617,203,4,21,103,218,59,96;OBS=599,331,0,4,911,632,652,459;STR=0.053;STZ=2.647;CBR=0.140;CBZ=6.961;QBR=0.107;QBZ=5.322;MBR=-0.273;MSR=-0.036;MBZ=-13.580;IOR=0.990;IOZ=-2.209;IOH=0.095;IOD=-0.355;AOI=-227.233;AOZ=-225.023;ABE=0.448;ABZ=-4.253;BCS=-12840.164;FIC=-0.217;LQR=0.316;MQ0=0.000;MQ10=0.404;MQ20=0.962;MQ30=1.360;MENDEL=0;SVM=-2.4367265;AN=24;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000419394|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000441245|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000448605|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	636092	.	T	G	0.0	SVM	NS=18;AF=0.438;AC=14;s50=0.03;LBS=10,5,7,5,137,71,112,134;OBS=9,7,1,5,1321,683,1496,817;STR=-0.013;STZ=-0.852;CBR=-0.046;CBZ=-3.005;QBR=-0.039;QBZ=-2.562;MBR=-0.302;MSR=-0.012;MBZ=-19.822;IOR=0.423;IOZ=-5.443;IOH=0.005;IOD=-0.000;AOI=-422.274;AOZ=-416.832;ABE=0.435;ABZ=-5.763;BCS=-8766.793;FIC=0.215;LQR=0.095;MQ0=0.000;MQ10=0.163;MQ20=0.517;MQ30=0.811;MENDEL=0;SVM=-2.7227428;AN=36;EFF=DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000419394|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000441245|),DOWNSTREAM(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000448605|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|)
1	657551	.	G	A	0.0	SVM	NS=231;AF=0.002;AC=1;s50=0.49;LBS=38,35,21,10,589,442,17,16;OBS=73,103,4,0,7391,9329,2,2;STR=0.005;STZ=0.714;CBR=-0.010;CBZ=-1.296;QBR=-0.019;QBZ=-2.511;MBR=0.105;MSR=-0.025;MBZ=13.682;IOR=0.073;IOZ=-10.098;IOH=0.001;IOD=0.001;AOI=-29.812;AOZ=-19.714;ABE=0.634;ABZ=7.524;BCS=-425.261;FIC=-3.149;LQR=0.061;MQ0=0.000;MQ10=0.125;MQ20=0.584;MQ30=0.903;MENDEL=0;SVM=-1.3969758;AN=462;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.1|unprocessed_pseudogene|NON_CODING|ENST00000382784|),DOWNSTREAM(MODIFIER||||RP11-206L10.1|unprocessed_pseudogene|NON_CODING|ENST00000506640|),TRANSCRIPT(MODIFIER||||CICP3|processed_pseudogene|NON_CODING|ENST00000440782|),TRANSCRIPT(MODIFIER||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000447954|),UPSTREAM(LOW||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000414688|),UPSTREAM(LOW||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000419394|),UPSTREAM(LOW||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000440200|),UPSTREAM(LOW||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000441245|),UPSTREAM(LOW||||RP5-857K21.4|processed_transcript|NON_CODING|ENST00000448605|)
1	701946	rs149754976	A	G	0.0	SVM	NS=2;AF=1.000;AC=3;s50=0.00;LBS=18,27,1,16,24,73,1,2;OBS=262,199,7,8,1413,1106,6,0;STZ=0.005;STZ=0.289;CBZ=0.001;CBZ=0.033;QBZ=0.093;QBZ=5.100;MBR=-0.091;MSR=0.006;MBZ=-4.959;IOZ=0.593;IOH=-3.769;IOD=1.000;IOD=0.993;AOZ=-762.287;AOZ=-758.518;ABZ=0.500;ABZ=0.000;BCS=-11425.234;FIC=-nan;LQR=0.045;MQ10=0.000;MQ10=0.194;MQ20=0.689;MQ30=0.845;MENDEL=0;SVM=-4.0595708;AN=4;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.4|lincRNA|NON_CODING|ENST00000422528|),TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.5|processed_transcript|NON_CODING|ENST00000417659|)
1	704367	rs71507456	T	C	0.0	SVM	NS=5;AF=0.429;AC=3;s50=0.00;LBS=2,9,66,100,2,8,21,108;OBS=1,2,562,551,13,14,159,164;STR=-0.011;STZ=-0.401;CBR=-0.024;CBZ=-0.903;QBR=0.022;QBZ=0.816;MBR=-0.141;MSR=-0.005;MBZ=-5.356;IOR=0.736;IOZ=-3.238;IOH=0.012;IOD=-0.008;AOI=-383.849;AOZ=-380.611;ABE=0.224;ABZ=-19.190;BCS=-5212.875;FIC=0.244;LQR=0.170;MQ0=0.000;MQ10=0.400;MQ20=0.650;MQ30=0.877;MENDEL=0;SVM=-3.1487608;AN=10;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.5|processed_transcript|NON_CODING|ENST00000417659|)
1	704412	.	C	T	0.0	SVM	NS=28;AF=0.016;AC=1;s50=0.07;LBS=5,33,260,397,1,2,121,519;OBS=0,2,4485,2870,3,0,1533,1465;STR=0.091;STZ=9.209;CBR=-0.046;CBZ=-4.710;QBR=-0.244;QBZ=-24.806;MBR=-0.107;MSR=-0.028;MBZ=-10.853;IOR=0.078;IOZ=-7.704;IOH=0.000;IOD=-0.000;AOI=-458.035;AOZ=-450.331;ABE=0.672;ABZ=41.338;BCS=-8855.282;FIC=-19.755;LQR=0.111;MQ0=0.000;MQ10=0.145;MQ20=0.467;MQ30=0.827;MENDEL=0;SVM=-1.4747155;AN=56;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.5|processed_transcript|NON_CODING|ENST00000417659|)
1	705881	rs116763968	C	T	0.0	PASS	NS=433;AF=0.001;AC=1;s50=0.94;LBS=2,2,157,94,2,4,5,8;OBS=0,1,2360,2938,0,3,61,76;STZ=-0.000;STZ=-0.004;CBZ=-0.019;CBZ=-1.417;QBZ=-0.088;QBZ=-6.453;MBR=-0.169;MSR=0.028;MBZ=-12.480;IOZ=0.109;IOH=-5.719;IOD=0.000;IOD=-0.001;AOZ=-33.048;AOZ=-27.329;ABZ=0.735;ABZ=12.005;BCS=-121.417;FIC=-16.250;LQR=0.046;MQ10=0.000;MQ10=0.059;MQ20=0.158;MQ30=0.286;MENDEL=0;SVM=3.5992356;AN=866;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|)
1	705882	rs72631875	G	A	0.0	PASS	NS=437;AF=0.034;AC=31;s50=0.94;LBS=8,27,5,2,104,208,4,1;OBS=189,238,1,0,2118,2784,1,0;STR=-0.006;STZ=-0.427;CBR=0.006;CBZ=0.417;QBR=0.010;QBZ=0.749;MBR=0.008;MSR=0.036;MBZ=0.618;IOR=0.057;IOZ=-5.779;IOH=0.000;IOD=-0.000;AOI=-91.110;AOZ=-85.331;ABE=0.529;ABZ=2.374;BCS=-1573.126;FIC=-0.134;LQR=0.061;MQ0=0.000;MQ10=0.060;MQ20=0.161;MQ30=0.288;MENDEL=0;SVM=6.4399309;AN=874;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|)
1	707886	rs115229562	G	C	0.0	SVM	NS=201;AF=0.026;AC=11;s50=0.44;LBS=3,17,24,35,281,410,7,23;OBS=4,26,629,679,13828,11938,11,8;STR=0.024;STZ=3.946;CBR=-0.001;CBZ=-0.117;QBR=0.015;QBZ=2.546;MBR=0.188;MSR=-0.061;MBZ=30.861;IOR=0.266;IOZ=-11.570;IOH=0.000;IOD=-0.002;AOI=-138.639;AOZ=-127.070;ABE=0.540;ABZ=5.794;BCS=-5573.865;FIC=-0.473;LQR=0.027;MQ0=0.000;MQ10=0.129;MQ20=0.510;MQ30=0.815;MENDEL=0;SVM=-0.67013431;AN=402;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|)
1	708091	.	A	G	0.0	SVM	NS=11;AF=1.000;AC=22;s50=0.02;LBS=145,46,4,0,95,38,2,2;OBS=85,155,0,1,2227,1407,1,1;STR=-0.127;STZ=-7.905;CBR=-0.094;CBZ=-5.853;QBR=0.303;QBZ=18.834;MBR=0.099;MSR=-0.142;MBZ=6.188;IOR=0.117;IOZ=-4.773;IOH=1.000;IOD=0.999;AOI=-886.335;AOZ=-881.563;ABE=0.500;ABZ=0.000;BCS=-18752.842;FIC=-nan;LQR=0.077;MQ0=0.000;MQ10=0.291;MQ20=0.612;MQ30=0.852;MENDEL=0;SVM=-1.9496255;AN=22;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|)
1	708461	rs145994687	G	T	0.0	SVM	NS=13;AF=0.034;AC=1;s50=0.03;LBS=7,6,16,4,152,63,198,28;OBS=2,8,2,1,2862,2640,1331,1514;STR=0.050;STZ=4.532;CBR=0.001;CBZ=0.101;QBR=-0.040;QBZ=-3.661;MBR=0.074;MSR=-0.019;MBZ=6.722;IOR=0.241;IOZ=-6.380;IOH=0.001;IOD=-0.000;AOI=-516.486;AOZ=-510.106;ABE=0.578;ABZ=17.113;BCS=-9731.422;FIC=-12.351;LQR=0.050;MQ0=0.000;MQ10=0.318;MQ20=0.710;MQ30=0.943;MENDEL=0;SVM=-3.7508983;AN=26;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|)
1	710445	.	A	G	0.0	SVM	NS=373;AF=0.001;AC=1;s50=0.80;LBS=263,43,2,0,11,44,1,0;OBS=2121,1942,0,0,248,193,0,0;STR=-0.024;STZ=-1.607;CBR=0.017;CBZ=1.170;QBR=-0.017;QBZ=-1.112;MBR=-0.106;MSR=0.051;MBZ=-7.100;IOR=0.000;IOZ=-5.336;IOH=0.000;IOD=0.000;AOI=-101.438;AOZ=-96.102;ABE=0.734;ABZ=20.709;BCS=-679.096;FIC=-38.422;LQR=0.074;MQ0=0.000;MQ10=0.107;MQ20=0.463;MQ30=0.762;MENDEL=0;SVM=-0.070207449;AN=746;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|)
1	712761	.	A	G	0.0	PASS	NS=410;AF=0.002;AC=2;s50=0.89;LBS=295,374,34,15,31,29,32,22;OBS=3276,5715,3,5,22,28,1,4;STR=-0.012;STZ=-1.136;CBR=-0.006;CBZ=-0.565;QBR=-0.014;QBZ=-1.359;MBR=0.027;MSR=0.111;MBZ=2.520;IOR=0.186;IOZ=-7.534;IOH=0.000;IOD=-0.001;AOI=-14.189;AOZ=-6.655;ABE=0.632;ABZ=4.023;BCS=-128.224;FIC=-0.051;LQR=0.075;MQ0=0.000;MQ10=0.100;MQ20=0.210;MQ30=0.556;MENDEL=0;SVM=1.6875661;AN=820;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	712762	rs12071806	T	G	0.0	PASS	NS=407;AF=0.004;AC=3;s50=0.88;LBS=12,6,13,15,44,84,269,203;OBS=11,17,4,18,363,654,2921,5280;STZ=-0.001;STZ=-0.055;CBZ=0.037;CBZ=3.565;QBZ=-0.060;QBZ=-5.797;MBR=-0.297;MSR=0.104;MBZ=-28.476;IOZ=0.496;IOH=-7.027;IOD=0.006;IOD=0.000;AOZ=-165.511;AOZ=-158.484;ABZ=0.698;ABZ=27.730;BCS=-2790.176;FIC=-11.915;LQR=0.061;MQ10=0.000;MQ10=0.085;MQ20=0.192;MQ30=0.544;MENDEL=0;SVM=1.2460894;AN=814;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	712871	rs4311830	T	C	0.0	PASS	NS=420;AF=0.005;AC=4;s50=0.91;LBS=9,0,37,9,6,0,199,69;OBS=1,1,151,186,0,0,1540,2148;STR=-0.017;STZ=-1.092;CBR=0.001;CBZ=0.055;QBR=-0.067;QBZ=-4.244;MBR=-0.184;MSR=0.042;MBZ=-11.646;IOR=0.076;IOZ=-4.942;IOH=0.001;IOD=0.000;AOI=-83.706;AOZ=-78.764;ABE=0.701;ABZ=13.955;BCS=-603.236;FIC=-7.389;LQR=0.072;MQ0=0.000;MQ10=0.076;MQ20=0.283;MQ30=0.729;MENDEL=0;SVM=1.5782432;AN=840;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	712911	.	C	T	0.0	SVM	NS=402;AF=0.002;AC=2;s50=0.87;LBS=2,1,449,168,2,1,5,4;OBS=1,2,2689,3451,0,0,30,29;STR=-0.014;STZ=-1.093;CBR=-0.002;CBZ=-0.147;QBR=0.037;QBZ=2.936;MBR=0.091;MSR=-0.074;MBZ=7.173;IOR=0.073;IOZ=-6.189;IOH=0.000;IOD=-0.000;AOI=-16.953;AOZ=-10.764;ABE=0.497;ABZ=-0.091;BCS=-209.419;FIC=-0.094;LQR=0.092;MQ0=0.000;MQ10=0.349;MQ20=0.484;MQ30=0.772;MENDEL=0;SVM=-0.039590354;AN=804;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	712930	rs28457007	T	C	0.0	PASS	NS=437;AF=0.011;AC=10;s50=0.94;LBS=1,3,14,18,4,3,114,53;OBS=2,0,363,511,1,1,2519,3059;STZ=0.025;STZ=2.001;CBZ=0.002;CBZ=0.141;QBZ=-0.003;QBZ=-0.267;MBR=0.240;MSR=-0.065;MBZ=19.241;IOZ=0.121;IOH=-5.380;IOD=0.000;IOD=-0.001;AOZ=-192.013;AOZ=-186.633;ABZ=0.613;ABZ=14.909;BCS=-3373.411;FIC=-1.919;LQR=0.030;MQ10=0.000;MQ10=0.311;MQ20=0.436;MQ30=0.734;MENDEL=0;SVM=1.6644807;AN=874;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	713092	rs4565649	G	A	0.0	PASS	NS=461;AF=0.014;AC=13;s50=0.99;LBS=8,19,2,11,32,100,2,15;OBS=154,178,0,2,1307,906,1,1;STR=0.086;STZ=4.354;CBR=-0.004;CBZ=-0.210;QBR=-0.003;QBZ=-0.138;MBR=0.182;MSR=0.080;MBZ=9.170;IOR=0.215;IOZ=-3.817;IOH=0.003;IOD=0.002;AOI=-103.628;AOZ=-99.810;ABE=0.538;ABZ=2.719;BCS=-1337.860;FIC=-0.196;LQR=0.059;MQ0=0.000;MQ10=0.141;MQ20=0.310;MQ30=0.689;MENDEL=0;SVM=2.9867193;AN=922;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	713337	.	G	A	0.0	PASS	NS=463;AF=0.001;AC=1;s50=1.00;LBS=2,14,4,3,41,171,0,10;OBS=30,21,3,3,2754,2223,0,1;STR=-0.007;STZ=-0.479;CBR=0.017;CBZ=1.215;QBR=0.004;QBZ=0.319;MBR=0.041;MSR=0.017;MBZ=2.889;IOR=0.202;IOZ=-5.263;IOH=0.000;IOD=-0.001;AOI=-15.696;AOZ=-10.433;ABE=0.621;ABZ=3.708;BCS=-165.057;FIC=-1.142;LQR=0.043;MQ0=0.000;MQ10=0.168;MQ20=0.282;MQ30=0.659;MENDEL=0;SVM=4.6623155;AN=926;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	713377	.	G	C	0.0	PASS	NS=453;AF=0.001;AC=1;s50=0.98;LBS=13,8,11,5,107,244,3,8;OBS=4,3,14,20,2281,2477,0,4;STR=0.011;STZ=0.768;CBR=-0.012;CBZ=-0.846;QBR=-0.027;QBZ=-1.895;MBR=0.023;MSR=0.112;MBZ=1.578;IOR=0.265;IOZ=-5.495;IOH=0.001;IOD=-0.001;AOI=-11.421;AOZ=-5.926;ABE=0.533;ABZ=0.790;BCS=-121.552;FIC=-0.127;LQR=0.071;MQ0=0.000;MQ10=0.142;MQ20=0.285;MQ30=0.565;MENDEL=0;SVM=2.6322513;AN=906;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	713587	.	A	C	0.0	PASS	NS=464;AF=0.001;AC=1;s50=1.00;LBS=175,148,10,4,4,13,14,8;OBS=1316,2394,8,15,5,2,9,1;STR=0.000;STZ=0.006;CBR=0.033;CBZ=2.025;QBR=-0.058;QBZ=-3.544;MBR=0.028;MSR=-0.032;MBZ=1.732;IOR=0.353;IOZ=-5.530;IOH=0.001;IOD=-0.004;AOI=-8.500;AOZ=-2.970;ABE=0.715;ABZ=4.432;BCS=-62.172;FIC=-0.115;LQR=0.083;MQ0=0.000;MQ10=0.244;MQ20=0.457;MQ30=0.817;MENDEL=0;SVM=1.8202531;AN=928;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	713848	.	G	C	0.0	PASS	NS=460;AF=0.001;AC=1;s50=0.99;LBS=0,1,0,3,21,8,0,0;OBS=2,7,16,33,707,961,0,0;STR=0.032;STZ=1.324;CBR=0.002;CBZ=0.083;QBR=-0.016;QBZ=-0.653;MBR=0.132;MSR=0.007;MBZ=5.488;IOR=0.569;IOZ=-2.608;IOH=0.000;IOD=-0.005;AOI=-22.295;AOZ=-19.687;ABE=0.474;ABZ=-0.735;BCS=-256.015;FIC=-1.207;LQR=0.018;MQ0=0.000;MQ10=0.250;MQ20=0.418;MQ30=0.813;MENDEL=0;SVM=1.760305;AN=920;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	713914	rs114212987	A	G	0.0	PASS	NS=436;AF=0.007;AC=6;s50=0.94;LBS=19,71,0,3,7,14,0,0;OBS=863,834,0,0,193,201,0,0;STZ=0.015;STZ=0.668;CBZ=0.015;CBZ=0.703;QBZ=-0.002;QBZ=-0.081;MBR=-0.192;MSR=-0.023;MBZ=-8.785;IOZ=0.000;IOH=-3.526;IOD=0.000;IOD=0.000;AOZ=-133.438;AOZ=-129.913;ABZ=0.623;ABZ=6.538;BCS=-1204.331;FIC=-4.803;LQR=0.050;MQ10=0.000;MQ10=0.103;MQ20=0.238;MQ30=0.555;MENDEL=0;SVM=2.987388;AN=872;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	713977	rs74512038	C	T	0.0	PASS	NS=454;AF=0.042;AC=38;s50=0.98;LBS=5,3,39,46,0,2,21,34;OBS=0,1,857,1134,0,0,328,344;STR=-0.050;STZ=-2.600;CBR=0.051;CBZ=2.617;QBR=-0.083;QBZ=-4.309;MBR=0.174;MSR=0.086;MBZ=8.994;IOR=0.057;IOZ=-4.096;IOH=0.000;IOD=-0.000;AOI=-194.395;AOZ=-190.300;ABE=0.575;ABZ=7.212;BCS=-2559.814;FIC=-0.402;LQR=0.050;MQ0=0.000;MQ10=0.146;MQ20=0.265;MQ30=0.493;MENDEL=0;SVM=2.9717394;AN=908;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	714019	rs114983708	A	G	0.0	PASS	NS=423;AF=0.014;AC=12;s50=0.91;LBS=92,129,7,3,44,23,4,4;OBS=974,1342,0,0,296,342,2,0;STR=-0.036;STZ=-1.962;CBR=-0.000;CBZ=-0.012;QBR=0.073;QBZ=3.972;MBR=-0.249;MSR=0.049;MBZ=-13.509;IOR=0.093;IOZ=-4.408;IOH=0.000;IOD=-0.001;AOI=-171.381;AOZ=-166.973;ABE=0.653;ABZ=14.289;BCS=-2057.687;FIC=-3.342;LQR=0.089;MQ0=0.000;MQ10=0.090;MQ20=0.215;MQ30=0.433;MENDEL=0;SVM=2.5783788;AN=846;EFF=UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	714086	.	A	G	0.0	PASS	NS=354;AF=0.007;AC=5;s50=0.77;LBS=150,134,14,3,24,20,6,3;OBS=1369,1315,12,3,185,235,3,2;STR=0.048;STZ=2.649;CBR=0.004;CBZ=0.250;QBR=-0.011;QBZ=-0.611;MBR=-0.179;MSR=-0.047;MBZ=-9.972;IOR=0.492;IOZ=-4.514;IOH=0.005;IOD=-0.001;AOI=-108.030;AOZ=-103.516;ABE=0.699;ABZ=19.517;BCS=-1129.148;FIC=-8.267;LQR=0.096;MQ0=0.000;MQ10=0.152;MQ20=0.316;MQ30=0.544;MENDEL=0;SVM=0.45763621;AN=708;EFF=UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	714277	rs138660747	C	A	0.0	PASS	NS=463;AF=0.001;AC=1;s50=1.00;LBS=0,6,15,50,0,7,0,5;OBS=10,7,632,501,0,0,1,2;STR=-0.006;STZ=-0.217;CBR=-0.029;CBZ=-0.974;QBR=0.012;QBZ=0.392;MBR=0.030;MSR=0.084;MBZ=1.024;IOR=0.320;IOZ=-2.508;IOH=0.000;IOD=-0.003;AOI=-9.564;AOZ=-7.056;ABE=0.410;ABZ=-1.436;BCS=-76.573;FIC=-0.148;LQR=0.058;MQ0=0.000;MQ10=0.089;MQ20=0.193;MQ30=0.341;MENDEL=0;SVM=4.9868677;AN=926;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	714426	.	A	G	0.0	SVM	NS=158;AF=0.012;AC=4;s50=0.34;LBS=252,550,21,35,37,70,19,34;OBS=6092,5712,4,4,322,382,4,2;STZ=0.027;STZ=3.026;CBZ=-0.006;CBZ=-0.629;QBZ=-0.024;QBZ=-2.677;MBR=-0.122;MSR=0.041;MBZ=-13.600;IOZ=0.160;IOH=-8.572;IOD=0.000;IOD=-0.001;AOZ=-102.240;AOZ=-93.667;ABZ=0.757;ABZ=35.756;BCS=-1516.388;FIC=-6.545;LQR=0.068;MQ10=0.000;MQ10=0.167;MQ20=0.308;MQ30=0.651;MENDEL=0;SVM=-0.6008695;AN=316;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	714427	rs12028261	G	A	0.0	PASS	NS=161;AF=0.846;AC=214;s50=0.20;LBS=234,692,3,12,84,140,5,8;OBS=5206,4944,1,1,1319,1197,1,2;STR=0.009;STZ=1.018;CBR=0.002;CBZ=0.262;QBR=0.011;QBZ=1.246;MBR=0.436;MSR=0.046;MBZ=49.101;IOR=0.063;IOZ=-8.645;IOH=0.000;IOD=-0.000;AOI=-1369.210;AOZ=-1360.565;ABE=0.283;ABZ=-51.800;BCS=-47681.571;FIC=-1.325;LQR=0.083;MQ0=0.000;MQ10=0.164;MQ20=0.297;MQ30=0.646;MENDEL=0;SVM=0.18296997;AN=322;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	714439	rs139182182	G	A	0.0	PASS	NS=412;AF=0.034;AC=27;s50=0.89;LBS=62,57,54,0,434,127,24,0;OBS=263,237,4,0,3326,3545,1,0;STR=-0.021;STZ=-1.810;CBR=0.002;CBZ=0.191;QBR=-0.042;QBZ=-3.617;MBR=0.057;MSR=-0.067;MBZ=4.890;IOR=0.107;IOZ=-6.461;IOH=0.001;IOD=0.000;AOI=-95.608;AOZ=-89.147;ABE=0.531;ABZ=2.598;BCS=-1807.564;FIC=-0.454;LQR=0.084;MQ0=0.000;MQ10=0.177;MQ20=0.320;MQ30=0.657;MENDEL=0;SVM=1.6547992;AN=824;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	714596	rs149887893	T	C	0.0	PASS	NS=434;AF=0.002;AC=2;s50=0.94;LBS=0,2,4,18,2,6,59,53;OBS=0,0,228,208,0,0,799,801;STR=-0.019;STZ=-0.871;CBR=-0.029;CBZ=-1.319;QBR=0.078;QBZ=3.507;MBR=-0.274;MSR=0.043;MBZ=-12.385;IOR=0.000;IOZ=-3.570;IOH=0.000;IOD=0.000;AOI=-145.614;AOZ=-142.044;ABE=0.624;ABZ=7.494;BCS=-1256.762;FIC=-21.155;LQR=0.062;MQ0=0.000;MQ10=0.126;MQ20=0.250;MQ30=0.517;MENDEL=0;SVM=2.2091471;AN=868;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	714686	.	G	C	0.0	PASS	NS=454;AF=0.001;AC=1;s50=0.98;LBS=1,2,2,3,22,27,0,3;OBS=2,2,232,90,2636,1138,0,0;STR=-0.013;STZ=-0.806;CBR=-0.019;CBZ=-1.222;QBR=0.003;QBZ=0.196;MBR=0.199;MSR=-0.005;MBZ=12.738;IOR=0.181;IOZ=-4.247;IOH=0.000;IOD=-0.001;AOI=-91.154;AOZ=-86.907;ABE=0.596;ABZ=7.634;BCS=-1262.048;FIC=-11.537;LQR=0.013;MQ0=0.000;MQ10=0.399;MQ20=0.512;MQ30=0.794;MENDEL=0;SVM=1.3425008;AN=908;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	715074	rs11804379	A	G	0.0	PASS	NS=462;AF=0.002;AC=2;s50=1.00;LBS=44,157,3,3,2,22,1,10;OBS=1336,841,4,0,61,26,2,1;STZ=-0.034;STZ=-1.612;CBZ=0.004;CBZ=0.190;QBZ=0.035;QBZ=1.661;MBR=0.098;MSR=-0.004;MBZ=4.641;IOZ=0.316;IOH=-3.855;IOD=0.000;IOD=-0.003;AOZ=-28.412;AOZ=-24.557;ABZ=0.547;ABZ=1.737;BCS=-328.574;FIC=-1.346;LQR=0.090;MQ10=0.000;MQ10=0.326;MQ20=0.445;MQ30=0.753;MENDEL=0;SVM=3.3154757;AN=924;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	715144	.	A	G	0.0	SVM	NS=436;AF=0.001;AC=1;s50=0.94;LBS=43,38,0,0,1,4,0,5;OBS=958,682,0,1,66,35,1,0;STR=-0.032;STZ=-1.350;CBR=-0.113;CBZ=-4.699;QBR=0.010;QBZ=0.415;MBR=0.107;MSR=-0.030;MBZ=4.456;IOR=0.185;IOZ=-2.963;IOH=0.000;IOD=-0.001;AOI=-41.812;AOZ=-38.849;ABE=0.811;ABZ=18.485;BCS=-140.322;FIC=-10.549;LQR=0.047;MQ0=0.000;MQ10=0.493;MQ20=0.612;MQ30=0.858;MENDEL=0;SVM=-0.26104537;AN=872;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	715151	.	G	T	0.0	PASS	NS=432;AF=0.001;AC=1;s50=0.93;LBS=2,8,0,2,30,54,4,10;OBS=0,0,0,0,1102,702,95,59;STR=-0.003;STZ=-0.130;CBR=-0.063;CBZ=-2.769;QBR=-0.019;QBZ=-0.826;MBR=0.184;MSR=-0.014;MBZ=8.129;IOR=0.000;IOZ=-3.105;IOH=0.000;IOD=0.000;AOI=-60.668;AOZ=-57.563;ABE=0.765;ABZ=17.552;BCS=-325.407;FIC=-12.715;LQR=0.048;MQ0=0.000;MQ10=0.539;MQ20=0.652;MQ30=0.901;MENDEL=0;SVM=0.040146896;AN=864;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	715205	rs141090730	C	G	0.0	PASS	NS=460;AF=0.010;AC=10;s50=0.99;LBS=3,0,92,75,11,17,3,1;OBS=0,0,1704,1998,196,194,1,1;STR=-0.025;STZ=-1.593;CBR=0.022;CBZ=1.400;QBR=-0.011;QBZ=-0.684;MBR=0.379;MSR=-0.002;MBZ=24.240;IOR=0.079;IOZ=-4.841;IOH=0.000;IOD=-0.000;AOI=-97.795;AOZ=-92.954;ABE=0.551;ABZ=4.211;BCS=-1489.941;FIC=-0.526;LQR=0.045;MQ0=0.000;MQ10=0.312;MQ20=0.475;MQ30=0.832;MENDEL=0;SVM=2.905397;AN=920;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	715265	rs12184267	C	T	0.0	PASS	NS=452;AF=0.020;AC=19;s50=0.98;LBS=1,3,69,68,1,1,26,16;OBS=0,0,1294,1653,0,0,223,293;STZ=0.005;STZ=0.288;CBZ=-0.009;CBZ=-0.507;QBZ=-0.034;QBZ=-1.972;MBR=0.178;MSR=0.021;MBZ=10.491;IOZ=0.000;IOH=-4.253;IOD=0.000;IOD=0.000;AOZ=-145.143;AOZ=-140.890;ABZ=0.666;ABZ=18.112;BCS=-1789.319;FIC=-0.652;LQR=0.049;MQ10=0.000;MQ10=0.221;MQ20=0.349;MQ30=0.578;MENDEL=0;SVM=3.2644264;AN=904;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	715348	rs3131984	T	G	0.0	SVM	NS=355;AF=1.000;AC=703;s50=0.76;LBS=7,0,4,0,474,49,166,23;OBS=0,1,2,0,5118,6404,23,4;STR=0.039;STZ=4.201;CBR=-0.018;CBZ=-1.944;QBR=0.074;QBZ=7.991;MBR=0.010;MSR=-0.010;MBZ=1.121;IOR=0.046;IOZ=-7.886;IOH=1.000;IOD=1.000;AOI=-1701.901;AOZ=-1694.015;ABE=0.500;ABZ=0.000;BCS=-61863.672;FIC=-nan;LQR=0.058;MQ0=0.000;MQ10=0.393;MQ20=0.520;MQ30=0.865;MENDEL=0;SVM=-0.65009451;AN=710;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	715367	rs12184277	A	G	0.0	PASS	NS=426;AF=0.008;AC=7;s50=0.92;LBS=66,413,3,18,9,30,4,19;OBS=3777,3172,2,1,308,268,1,6;STR=0.005;STZ=0.411;CBR=0.009;CBZ=0.814;QBR=-0.018;QBZ=-1.561;MBR=0.192;MSR=-0.039;MBZ=16.656;IOR=0.221;IOZ=-5.915;IOH=0.000;IOD=-0.001;AOI=-116.460;AOZ=-110.545;ABE=0.633;ABZ=14.279;BCS=-2105.483;FIC=-2.917;LQR=0.064;MQ0=0.000;MQ10=0.222;MQ20=0.364;MQ30=0.764;MENDEL=0;SVM=1.5676265;AN=852;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	715990	.	T	A	0.0	SVM	NS=29;AF=0.032;AC=2;s50=0.06;LBS=438,623,61,90,63,104,918,677;OBS=3315,3552,14,12,5,11,9619,15829;STR=-0.087;STZ=-15.723;CBR=-0.031;CBZ=-5.593;QBR=-0.106;QBZ=-19.032;MBR=0.300;MSR=-0.047;MBZ=53.916;IOR=0.199;IOZ=-12.961;IOH=0.001;IOD=-0.000;AOI=-619.735;AOZ=-606.774;ABE=0.727;ABZ=97.284;BCS=-20321.972;FIC=-9.678;LQR=0.076;MQ0=0.000;MQ10=0.639;MQ20=0.771;MQ30=0.949;MENDEL=0;SVM=-1.5881663;AN=58;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	715996	rs71507457	A	T	0.0	SVM	NS=31;AF=0.980;AC=46;s50=0.04;LBS=527,657,39,34,37,57,383,385;OBS=4878,6092,4,7,3,5,7501,13262;STZ=0.081;STZ=14.485;CBZ=-0.022;CBZ=-3.991;QBZ=0.218;QBZ=38.906;MBR=-0.288;MSR=-0.045;MBZ=-51.352;IOZ=0.097;IOH=-13.312;IOD=0.001;IOD=0.000;AOZ=-1819.069;AOZ=-1805.757;ABZ=0.352;ABZ=-67.441;BCS=-94139.207;FIC=-21.325;LQR=0.058;MQ10=0.000;MQ10=0.608;MQ20=0.751;MQ30=0.947;MENDEL=0;SVM=-1.6697338;AN=62;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	716041	rs149301622	G	A	0.0	PASS	NS=403;AF=0.006;AC=5;s50=0.87;LBS=21,73,1,10,109,531,6,46;OBS=457,521,0,1,5881,6008,0,4;STR=0.015;STZ=1.645;CBR=-0.010;CBZ=-1.186;QBR=-0.029;QBZ=-3.295;MBR=0.242;MSR=0.054;MBZ=27.435;IOR=0.066;IOZ=-8.454;IOH=0.001;IOD=0.001;AOI=-142.169;AOZ=-133.715;ABE=0.556;ABZ=7.256;BCS=-3699.699;FIC=-4.227;LQR=0.054;MQ0=0.000;MQ10=0.270;MQ20=0.420;MQ30=0.841;MENDEL=0;SVM=0.62306126;AN=806;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|),UPSTREAM(LOW||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|)
1	717587	rs144155419	G	A	0.0	PASS	NS=388;AF=0.031;AC=22;s50=0.83;LBS=16,16,2,3,128,139,5,5;OBS=465,240,0,0,4513,2574,1,0;STR=-0.013;STZ=-1.190;CBR=-0.016;CBZ=-1.416;QBR=0.038;QBZ=3.381;MBR=0.152;MSR=-0.015;MBZ=13.417;IOR=0.025;IOZ=-6.201;IOH=0.000;IOD=-0.000;AOI=-138.027;AOZ=-131.826;ABE=0.510;ABZ=1.002;BCS=-2959.876;FIC=-0.006;LQR=0.037;MQ0=0.000;MQ10=0.115;MQ20=0.264;MQ30=0.588;MENDEL=0;SVM=1.8131779;AN=776;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|)
1	717627	rs147384991	C	G	0.0	SVM	NS=259;AF=0.002;AC=1;s50=0.56;LBS=10,4,154,68,4,3,17,5;OBS=1,0,3519,4028,9,20,1,3;STR=0.019;STZ=1.639;CBR=0.003;CBZ=0.238;QBR=0.001;QBZ=0.072;MBR=0.016;MSR=0.018;MBZ=1.436;IOR=0.117;IOZ=-6.153;IOH=0.000;IOD=-0.001;AOI=-11.129;AOZ=-4.976;ABE=0.483;ABZ=-0.351;BCS=-86.845;FIC=-0.084;LQR=0.029;MQ0=0.000;MQ10=0.190;MQ20=0.371;MQ30=0.657;MENDEL=0;SVM=-0.72328821;AN=518;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|)
1	718335	rs139075578	A	G	0.0	PASS	NS=360;AF=0.001;AC=1;s50=0.78;LBS=190,79,0,0,19,20,3,0;OBS=1347,1494,0,0,304,296,0,0;STZ=-0.025;STZ=-1.449;CBZ=-0.018;CBZ=-1.056;QBZ=0.052;QBZ=3.068;MBR=-0.219;MSR=-0.016;MBZ=-12.850;IOZ=0.000;IOH=-4.675;IOD=0.000;IOD=0.000;AOZ=-153.941;AOZ=-149.266;ABZ=0.694;ABZ=18.207;BCS=-1400.428;FIC=-57.657;LQR=0.082;MQ10=0.000;MQ10=0.133;MQ20=0.324;MQ30=0.772;MENDEL=0;SVM=0.1431222;AN=720;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|)
1	718336	.	T	C	0.0	PASS	NS=388;AF=0.001;AC=1;s50=0.84;LBS=1,0,1,3,2,1,45,122;OBS=2,1,11,18,0,1,1688,1700;STR=0.021;STZ=1.253;CBR=0.002;CBZ=0.114;QBR=-0.017;QBZ=-0.995;MBR=0.068;MSR=-0.010;MBZ=3.972;IOR=0.184;IOZ=-4.212;IOH=0.000;IOD=-0.001;AOI=-11.612;AOZ=-7.400;ABE=0.518;ABZ=0.412;BCS=-106.174;FIC=-0.185;LQR=0.048;MQ0=0.000;MQ10=0.157;MQ20=0.346;MQ30=0.777;MENDEL=0;SVM=0.58324943;AN=776;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|)
1	718367	.	A	G	0.0	PASS	NS=445;AF=0.001;AC=1;s50=0.96;LBS=128,346,8,8,8,4,13,8;OBS=3608,3752,2,0,31,40,3,1;STR=0.010;STZ=0.890;CBR=-0.008;CBZ=-0.668;QBR=0.042;QBZ=3.602;MBR=-0.015;MSR=-0.018;MBZ=-1.336;IOR=0.148;IOZ=-5.885;IOH=0.000;IOD=-0.001;AOI=-19.227;AOZ=-13.342;ABE=0.676;ABZ=6.846;BCS=-221.842;FIC=-5.220;LQR=0.061;MQ0=0.000;MQ10=0.319;MQ20=0.449;MQ30=0.767;MENDEL=0;SVM=0.79765615;AN=890;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|)
1	718386	rs10900602	A	G	0.0	SVM	NS=382;AF=0.956;AC=725;s50=0.82;LBS=118,57,2,1,196,161,1,0;OBS=940,1281,2,2,4391,5056,8,1;STZ=-0.033;STZ=-3.537;CBZ=-0.008;CBZ=-0.883;QBZ=0.078;QBZ=8.406;MBR=0.053;MSR=-0.041;MBZ=5.672;IOZ=0.168;IOH=-8.020;IOD=0.001;IOD=0.000;AOZ=-1362.585;AOZ=-1354.565;ABZ=0.364;ABZ=-24.333;BCS=-46234.747;FIC=-2.609;LQR=0.044;MQ10=0.000;MQ10=0.331;MQ20=0.470;MQ30=0.777;MENDEL=0;SVM=-0.1246655;AN=764;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|)
1	718555	rs10751453	T	C	0.0	SVM	NS=309;AF=1.000;AC=573;s50=0.57;LBS=6,5,242,342,2,2,38,71;OBS=0,3,6355,4392,0,1,2163,1310;STR=0.028;STZ=3.288;CBR=-0.051;CBZ=-6.119;QBR=0.066;QBZ=7.909;MBR=0.406;MSR=0.023;MBZ=48.407;IOR=0.045;IOZ=-9.258;IOH=1.000;IOD=1.000;AOI=-1355.919;AOZ=-1346.661;ABE=0.500;ABZ=0.000;BCS=-39218.935;FIC=-nan;LQR=0.046;MQ0=0.000;MQ10=0.504;MQ20=0.584;MQ30=0.711;MENDEL=2;SVM=-0.96686723;AN=618;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|)
1	718609	.	C	T	0.0	PASS	NS=443;AF=0.002;AC=2;s50=0.95;LBS=1,7,104,118,1,11,2,11;OBS=0,0,2076,1643,0,0,18,15;STR=0.003;STZ=0.165;CBR=-0.010;CBZ=-0.583;QBR=0.011;QBZ=0.703;MBR=0.042;MSR=-0.009;MBZ=2.569;IOR=0.000;IOZ=-4.763;IOH=0.000;IOD=0.000;AOI=-12.812;AOZ=-8.049;ABE=0.552;ABZ=1.262;BCS=-89.063;FIC=-0.104;LQR=0.059;MQ0=0.000;MQ10=0.092;MQ20=0.216;MQ30=0.527;MENDEL=0;SVM=3.1757858;AN=886;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|)
1	718776	.	T	C	0.0	PASS	NS=452;AF=0.003;AC=3;s50=0.98;LBS=5,1,4,14,1,3,96,169;OBS=0,3,82,152,1,2,2119,3928;STR=-0.000;STZ=-0.019;CBR=-0.024;CBZ=-1.914;QBR=0.033;QBZ=2.644;MBR=-0.020;MSR=0.012;MBZ=-1.616;IOR=0.136;IOZ=-6.176;IOH=0.000;IOD=-0.001;AOI=-49.367;AOZ=-43.192;ABE=0.624;ABZ=5.170;BCS=-654.584;FIC=-1.954;LQR=0.043;MQ0=0.000;MQ10=0.399;MQ20=0.564;MQ30=0.822;MENDEL=0;SVM=0.85477004;AN=904;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|),UPSTREAM(LOW||||RP11-206L10.2|processed_transcript|NON_CODING|ENST00000428504|)
1	719456	.	T	C	0.0	SVM	NS=393;AF=0.001;AC=1;s50=0.85;LBS=0,2,1,4,1,3,9,25;OBS=0,0,0,2,0,0,155,337;STR=0.025;STZ=0.552;CBR=-0.080;CBZ=-1.769;QBR=-0.061;QBZ=-1.361;MBR=0.024;MSR=0.167;MBZ=0.544;IOR=0.000;IOZ=-1.522;IOH=0.000;IOD=0.000;AOI=-3.047;AOZ=-1.524;ABE=0.886;ABZ=5.912;BCS=3.083;FIC=0.728;LQR=0.073;MQ0=0.000;MQ10=0.059;MQ20=0.146;MQ30=0.255;MENDEL=0;SVM=-0.95550749;AN=786;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|)
1	720112	.	T	C	0.0	SVM	NS=443;AF=0.001;AC=1;s50=0.95;LBS=0,1,2,0,0,0,14,6;OBS=2,1,3,0,0,0,161,99;STR=-0.064;STZ=-1.045;CBR=0.138;CBZ=2.243;QBR=-0.001;QBZ=-0.009;MBR=0.126;MSR=-0.023;MBZ=2.038;IOR=0.654;IOZ=-1.210;IOH=0.002;IOD=-0.009;AOI=-2.529;AOZ=-1.320;ABE=0.984;ABZ=8.890;BCS=-9.821;FIC=0.972;LQR=0.077;MQ0=0.000;MQ10=0.471;MQ20=0.548;MQ30=0.768;MENDEL=0;SVM=-2.0231149;AN=886;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|)
1	720240	rs3121393	T	C	0.0	PASS	NS=430;AF=0.968;AC=820;s50=0.90;LBS=1,1,286,120,4,2,163,70;OBS=0,0,7849,7446,1,0,579,440;STZ=0.027;STZ=3.401;CBZ=-0.013;CBZ=-1.621;QBZ=0.080;QBZ=10.230;MBR=-0.253;MSR=-0.052;MBZ=-32.350;IOZ=0.013;IOH=-8.735;IOD=0.000;IOD=-0.000;AOZ=-2040.897;AOZ=-2032.162;ABZ=0.455;ABZ=-5.790;BCS=-83023.913;FIC=-0.740;LQR=0.038;MQ10=0.000;MQ10=0.432;MQ20=0.523;MQ30=0.816;MENDEL=0;SVM=0.27826191;AN=860;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|)
1	720381	rs116801199	G	T	0.0	PASS	NS=437;AF=0.003;AC=3;s50=0.94;LBS=1,0,0,3,56,35,18,22;OBS=0,0,0,0,2197,1043,476,230;STR=0.003;STZ=0.209;CBR=0.021;CBZ=1.292;QBR=-0.049;QBZ=-3.056;MBR=-0.394;MSR=0.001;MBZ=-24.774;IOR=0.000;IOZ=-4.614;IOH=0.000;IOD=0.000;AOI=-182.351;AOZ=-177.736;ABE=0.672;ABZ=20.350;BCS=-2316.362;FIC=-9.593;LQR=0.032;MQ0=0.000;MQ10=0.118;MQ20=0.248;MQ30=0.474;MENDEL=0;SVM=2.1182234;AN=874;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|)
1	720797	rs75530702	G	A	0.0	PASS	NS=458;AF=0.950;AC=868;s50=0.98;LBS=317,399,2,1,75,88,1,0;OBS=11926,10533,1,2,710,609,3,1;STR=0.003;STZ=0.513;CBR=-0.009;CBZ=-1.366;QBR=0.066;QBZ=10.171;MBR=-0.217;MSR=-0.080;MBZ=-33.474;IOR=0.051;IOZ=-11.416;IOH=0.000;IOD=-0.000;AOI=-2291.052;AOZ=-2279.637;ABE=0.460;ABZ=-5.896;BCS=-118916.284;FIC=-0.155;LQR=0.036;MQ0=0.000;MQ10=0.390;MQ20=0.478;MQ30=0.784;MENDEL=0;SVM=1.5474468;AN=916;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|)
1	720984	.	T	G	0.0	PASS	NS=463;AF=0.002;AC=2;s50=1.00;LBS=7,19,6,19,5,37,251,437;OBS=1,2,1,2,55,36,7094,6048;STR=-0.011;STZ=-1.217;CBR=-0.020;CBZ=-2.279;QBR=0.025;QBZ=2.899;MBR=0.029;MSR=0.087;MBZ=3.390;IOR=0.069;IOZ=-9.001;IOH=0.000;IOD=-0.000;AOI=-20.329;AOZ=-11.327;ABE=0.551;ABZ=2.014;BCS=-267.443;FIC=-0.560;LQR=0.052;MQ0=0.000;MQ10=0.192;MQ20=0.367;MQ30=0.714;MENDEL=0;SVM=3.8300304;AN=926;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|)
1	721290	rs12565286	G	C	0.0	PASS	NS=444;AF=0.011;AC=10;s50=0.96;LBS=3,3,21,19,96,202,3,1;OBS=1,4,276,597,2479,3362,0,2;STZ=0.074;STZ=6.057;CBZ=-0.030;CBZ=-2.460;QBZ=-0.015;QBZ=-1.222;MBR=-0.261;MSR=0.023;MBZ=-21.371;IOZ=0.165;IOH=-5.932;IOD=0.001;IOD=-0.000;AOZ=-174.527;AOZ=-168.595;ABZ=0.692;ABZ=19.434;BCS=-2760.626;FIC=-3.228;LQR=0.048;MQ10=0.000;MQ10=0.078;MQ20=0.176;MQ30=0.340;MENDEL=0;SVM=3.0795458;AN=888;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||AL669831.1|protein_coding|CODING|ENST00000358533|)
1	721559	.	C	T	0.0	PASS	NS=463;AF=0.001;AC=1;s50=1.00;LBS=0,0,9,7,0,1,3,2;OBS=0,0,187,221,0,0,12,17;STR=0.021;STZ=0.442;CBR=-0.046;CBZ=-0.961;QBR=-0.033;QBZ=-0.687;MBR=0.227;MSR=0.078;MBZ=4.744;IOR=0.000;IOZ=-1.589;IOH=0.000;IOD=0.000;AOI=-22.789;AOZ=-21.200;ABE=0.646;ABZ=3.783;BCS=-88.714;FIC=-1.174;LQR=0.046;MQ0=0.000;MQ10=0.378;MQ20=0.483;MQ30=0.719;MENDEL=0;SVM=2.9561001;AN=926;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Cat/Tat|H52Y|AL669831.1|protein_coding|CODING|ENST00000358533|exon_1_721320_722513),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	721705	rs151072073	A	G	0.0	PASS	NS=464;AF=0.002;AC=2;s50=1.00;LBS=3,8,0,1,0,2,0,0;OBS=120,361,0,0,9,34,0,0;STR=0.022;STZ=0.501;CBR=-0.066;CBZ=-1.509;QBR=0.005;QBZ=0.115;MBR=0.161;MSR=0.028;MBZ=3.681;IOR=0.000;IOZ=-1.706;IOH=0.000;IOD=0.000;AOI=-30.971;AOZ=-29.265;ABE=0.560;ABZ=1.658;BCS=-159.312;FIC=-0.043;LQR=0.024;MQ0=0.000;MQ10=0.250;MQ20=0.315;MQ30=0.634;MENDEL=0;SVM=4.1428097;AN=928;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),SYNONYMOUS_CODING(LOW|SILENT|caA/caG|Q100|AL669831.1|protein_coding|CODING|ENST00000358533|exon_1_721320_722513),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	721757	.	T	A	0.0	PASS	NS=439;AF=0.011;AC=10;s50=0.94;LBS=20,29,2,0,1,2,28,30;OBS=158,257,0,0,0,0,445,1038;STR=-0.072;STZ=-3.126;CBR=0.004;CBZ=0.190;QBR=-0.190;QBZ=-8.256;MBR=0.242;MSR=0.098;MBZ=10.548;IOR=0.000;IOZ=-3.180;IOH=0.000;IOD=0.000;AOI=-154.741;AOZ=-151.560;ABE=0.741;ABZ=26.370;BCS=-1098.300;FIC=-1.764;LQR=0.053;MQ0=0.000;MQ10=0.280;MQ20=0.363;MQ30=0.628;MENDEL=0;SVM=0.67483808;AN=878;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),NON_SYNONYMOUS_CODING(MODERATE|MISSENSE|Ttt/Att|F118I|AL669831.1|protein_coding|CODING|ENST00000358533|exon_1_721320_722513),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	722559	rs150361918	T	C	0.0	PASS	NS=452;AF=0.002;AC=2;s50=0.98;LBS=0,0,3,7,0,0,4,3;OBS=0,0,103,240,0,0,213,543;STR=-0.019;STZ=-0.639;CBR=-0.040;CBZ=-1.318;QBR=-0.071;QBZ=-2.353;MBR=0.585;MSR=-0.013;MBZ=19.400;IOR=0.000;IOZ=-2.284;IOH=0.000;IOD=0.000;AOI=-176.706;AOZ=-174.422;ABE=0.637;ABZ=11.283;BCS=-1237.982;FIC=-6.276;LQR=0.015;MQ0=0.000;MQ10=0.530;MQ20=0.584;MQ30=0.800;MENDEL=0;SVM=1.1474729;AN=904;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000457084|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	722670	rs116030099	T	C	0.0	PASS	NS=422;AF=0.025;AC=22;s50=0.91;LBS=1,2,14,25,0,3,51,52;OBS=0,0,502,809,0,1,1046,1845;STZ=-0.020;STZ=-1.316;CBZ=0.035;CBZ=2.283;QBZ=0.012;QBZ=0.769;MBR=0.442;MSR=-0.062;MBZ=28.668;IOZ=0.043;IOH=-4.741;IOD=0.000;IOD=-0.000;AOZ=-324.853;AOZ=-320.112;ABZ=0.555;ABZ=8.111;BCS=-5244.906;FIC=-1.446;LQR=0.033;MQ10=0.000;MQ10=0.249;MQ20=0.316;MQ30=0.616;MENDEL=0;SVM=2.1487498;AN=844;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	722672	rs143583930	C	T	0.0	PASS	NS=421;AF=0.010;AC=9;s50=0.91;LBS=0,2,63,64,0,2,3,6;OBS=1,0,1225,1863,0,2,246,459;STR=0.038;STZ=2.340;CBR=-0.022;CBZ=-1.325;QBR=0.052;QBZ=3.180;MBR=-0.620;MSR=-0.020;MBZ=-38.184;IOR=0.137;IOZ=-4.349;IOH=0.000;IOD=-0.001;AOI=-191.486;AOZ=-187.137;ABE=0.503;ABZ=0.175;BCS=-2883.569;FIC=-0.946;LQR=0.035;MQ0=0.000;MQ10=0.196;MQ20=0.263;MQ30=0.587;MENDEL=0;SVM=1.7508112;AN=842;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	722980	rs114222710	C	T	0.0	PASS	NS=460;AF=0.010;AC=10;s50=0.99;LBS=1,0,34,19,0,0,2,41;OBS=0,0,309,546,0,0,105,184;STZ=-0.002;STZ=-0.068;CBZ=0.034;CBZ=1.159;QBZ=-0.018;QBZ=-0.593;MBR=-0.110;MSR=0.074;MBZ=-3.730;IOZ=0.000;IOH=-2.683;IOD=0.000;IOD=0.000;AOZ=-127.877;AOZ=-125.193;ABZ=0.458;ABZ=-2.704;BCS=-1150.974;FIC=-0.492;LQR=0.077;MQ10=0.000;MQ10=0.085;MQ20=0.170;MQ30=0.337;MENDEL=0;SVM=5.6072255;AN=920;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723025	.	C	T	0.0	PASS	NS=459;AF=0.002;AC=2;s50=0.99;LBS=0,1,26,2,0,0,3,2;OBS=0,0,269,368,0,0,38,41;STR=-0.037;STZ=-1.001;CBR=0.007;CBZ=0.178;QBR=-0.009;QBZ=-0.235;MBR=0.214;MSR=-0.076;MBZ=5.714;IOR=0.000;IOZ=-1.913;IOH=0.000;IOD=0.000;AOI=-49.840;AOZ=-47.927;ABE=0.594;ABZ=3.680;BCS=-273.238;FIC=-1.629;LQR=0.044;MQ0=0.000;MQ10=0.366;MQ20=0.434;MQ30=0.721;MENDEL=0;SVM=2.7818364;AN=918;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723307	rs28659788	C	G	0.0	PASS	NS=440;AF=0.007;AC=6;s50=0.95;LBS=0,0,65,13,29,7,0,0;OBS=0,0,1052,722,414,327,0,0;STZ=0.032;STZ=1.592;CBZ=0.010;CBZ=0.499;QBZ=0.024;QBZ=1.207;MBR=-0.357;MSR=0.004;MBZ=-17.903;IOZ=0.000;IOH=-3.672;IOD=0.000;IOD=0.000;AOZ=-238.120;AOZ=-234.448;ABZ=0.662;ABZ=21.332;BCS=-2644.536;FIC=-3.585;LQR=0.043;MQ10=0.000;MQ10=0.062;MQ20=0.148;MQ30=0.378;MENDEL=0;SVM=3.9540879;AN=880;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723310	.	C	T	0.0	PASS	NS=440;AF=0.001;AC=1;s50=0.95;LBS=2,0,91,11,0,1,4,1;OBS=0,0,1269,830,0,0,19,11;STR=-0.006;STZ=-0.277;CBR=0.046;CBZ=2.119;QBR=0.024;QBZ=1.123;MBR=0.038;MSR=0.003;MBZ=1.767;IOR=0.000;IOZ=-3.152;IOH=0.000;IOD=0.000;AOI=-14.197;AOZ=-11.045;ABE=0.428;ABZ=-1.564;BCS=-122.784;FIC=-0.155;LQR=0.048;MQ0=0.000;MQ10=0.062;MQ20=0.155;MQ30=0.382;MENDEL=0;SVM=3.5926111;AN=880;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723556	.	A	G	0.0	SVM	NS=461;AF=0.001;AC=1;s50=0.98;LBS=10,31,0,0,2,2,1,5;OBS=679,336,1,0,2,1,1,0;STR=0.006;STZ=0.186;CBR=-0.039;CBZ=-1.229;QBR=-0.012;QBZ=-0.376;MBR=0.014;MSR=-0.114;MBZ=0.454;IOR=0.236;IOZ=-2.527;IOH=0.000;IOD=-0.002;AOI=-3.431;AOZ=-0.904;ABE=1.000;ABZ=20.220;BCS=1.600;FIC=0.838;LQR=0.042;MQ0=0.000;MQ10=0.399;MQ20=0.461;MQ30=0.639;MENDEL=0;SVM=-1.9495912;AN=922;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723572	rs111971599	A	C	0.0	SVM	NS=421;AF=0.001;AC=1;s50=0.88;LBS=61,36,9,2,7,3,9,0;OBS=615,355,2,6,4,0,0,0;STZ=0.070;STZ=2.201;CBZ=0.040;CBZ=1.264;QBZ=-0.047;QBZ=-1.477;MBR=0.081;MSR=-0.066;MBZ=2.534;IOZ=0.406;IOH=-2.394;IOD=0.000;IOD=-0.004;AOZ=-5.231;AOZ=-2.837;ABZ=0.582;ABZ=0.596;BCS=-8.358;FIC=0.456;LQR=0.099;MQ10=0.000;MQ10=0.424;MQ20=0.495;MQ30=0.689;MENDEL=0;SVM=-1.0243705;AN=842;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723739	.	C	T	0.0	SVM	NS=140;AF=0.014;AC=4;s50=0.29;LBS=13,6,99,20,9,1,20,24;OBS=22,8,1147,536,14,4,401,124;STR=-0.076;STZ=-3.579;CBR=0.071;CBZ=3.323;QBR=-0.023;QBZ=-1.095;MBR=0.009;MSR=-0.048;MBZ=0.414;IOR=0.805;IOZ=-3.323;IOH=0.005;IOD=-0.017;AOI=-168.990;AOZ=-165.667;ABE=0.621;ABZ=11.880;BCS=-1955.322;FIC=-5.006;LQR=0.069;MQ0=0.000;MQ10=0.130;MQ20=0.279;MQ30=0.552;MENDEL=0;SVM=-0.63593268;AN=280;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723742	rs28375378	T	C	0.0	SVM	NS=134;AF=0.034;AC=9;s50=0.28;LBS=11,4,33,10,10,5,114,81;OBS=9,3,426,141,23,5,1115,464;STZ=-0.044;STZ=-2.037;CBZ=0.094;CBZ=4.368;QBZ=0.056;QBZ=2.593;MBR=-0.141;MSR=-0.052;MBZ=-6.544;IOZ=0.759;IOH=-3.524;IOD=0.004;IOD=-0.014;AOZ=-179.200;AOZ=-175.676;ABZ=0.630;ABZ=12.661;BCS=-2097.071;FIC=-1.866;LQR=0.100;MQ10=0.000;MQ10=0.109;MQ20=0.244;MQ30=0.513;MENDEL=0;SVM=-0.54501652;AN=268;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723756	.	G	A	0.0	PASS	NS=179;AF=0.003;AC=1;s50=0.37;LBS=1,3,0,1,43,24,3,1;OBS=110,28,0,0,1509,403,1,0;STR=-0.004;STZ=-0.164;CBR=0.156;CBZ=7.075;QBR=-0.028;QBZ=-1.265;MBR=-0.046;MSR=0.039;MBZ=-2.074;IOR=0.086;IOZ=-3.264;IOH=0.000;IOD=-0.000;AOI=-51.952;AOZ=-48.689;ABE=0.717;ABZ=11.179;BCS=-236.828;FIC=-7.234;LQR=0.033;MQ0=0.000;MQ10=0.086;MQ20=0.203;MQ30=0.436;MENDEL=0;SVM=0.32287722;AN=358;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723761	.	G	A	0.0	PASS	NS=175;AF=0.006;AC=2;s50=0.36;LBS=2,4,0,1,71,44,0,2;OBS=61,19,1,0,1386,326,3,1;STZ=0.026;STZ=1.117;CBZ=-0.008;CBZ=-0.339;QBZ=-0.032;QBZ=-1.350;MBR=-0.109;MSR=-0.003;MBZ=-4.606;IOZ=0.335;IOH=-3.135;IOD=0.000;IOD=-0.003;AOZ=-31.446;AOZ=-28.310;ABZ=0.545;ABZ=1.145;BCS=-161.335;FIC=-1.381;LQR=0.063;MQ10=0.000;MQ10=0.071;MQ20=0.178;MQ30=0.386;MENDEL=0;SVM=1.4500515;AN=350;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723789	.	G	A	0.0	PASS	NS=273;AF=0.002;AC=1;s50=0.57;LBS=4,5,0,1,80,46,0,5;OBS=103,24,0,0,3036,627,0,0;STR=0.010;STZ=0.594;CBR=-0.025;CBZ=-1.547;QBR=-0.017;QBZ=-1.075;MBR=-0.042;MSR=-0.062;MBZ=-2.591;IOR=0.000;IOZ=-4.460;IOH=0.000;IOD=0.000;AOI=-37.535;AOZ=-33.075;ABE=0.290;ABZ=-6.916;BCS=-396.441;FIC=-10.449;LQR=0.034;MQ0=0.000;MQ10=0.048;MQ20=0.118;MQ30=0.246;MENDEL=1;SVM=2.3292052;AN=546;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723812	.	G	C	0.0	PASS	NS=259;AF=0.006;AC=3;s50=0.54;LBS=3,2,0,3,64,39,1,4;OBS=2,1,18,4,3383,668,0,0;STR=0.006;STZ=0.395;CBR=-0.034;CBZ=-2.178;QBR=-0.002;QBZ=-0.149;MBR=-0.001;MSR=-0.090;MBZ=-0.059;IOR=0.139;IOZ=-4.320;IOH=0.000;IOD=-0.001;AOI=-9.822;AOZ=-5.502;ABE=0.542;ABZ=0.845;BCS=-71.484;FIC=0.454;LQR=0.025;MQ0=0.000;MQ10=0.051;MQ20=0.122;MQ30=0.243;MENDEL=0;SVM=1.3608211;AN=518;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723819	rs11804171	T	A	0.0	PASS	NS=253;AF=0.069;AC=34;s50=0.52;LBS=3,7,0,4,1,14,77,61;OBS=448,77,1,2,6,1,2556,505;STZ=-0.017;STZ=-1.019;CBZ=-0.138;CBZ=-8.270;QBZ=0.086;QBZ=5.132;MBR=-0.287;MSR=-0.075;MBZ=-17.210;IOZ=0.323;IOH=-4.551;IOD=0.003;IOD=-0.000;AOZ=-134.933;AOZ=-130.382;ABZ=0.561;ABZ=5.349;BCS=-2085.743;FIC=0.208;LQR=0.040;MQ10=0.000;MQ10=0.068;MQ20=0.139;MQ30=0.272;MENDEL=0;SVM=1.8799785;AN=506;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723856	.	G	A	0.0	SVM	NS=245;AF=0.002;AC=1;s50=0.51;LBS=1,0,0,0,26,19,0,0;OBS=5,3,1,0,741,311,0,0;STR=0.019;STZ=0.608;CBR=0.070;CBZ=2.272;QBR=0.005;QBZ=0.177;MBR=0.050;MSR=-0.174;MBZ=1.639;IOR=0.128;IOZ=-2.606;IOH=0.000;IOD=-0.001;AOI=-5.931;AOZ=-3.325;ABE=0.548;ABZ=0.641;BCS=-23.553;FIC=0.344;LQR=0.042;MQ0=0.000;MQ10=0.367;MQ20=0.448;MQ30=0.672;MENDEL=0;SVM=-1.5919086;AN=490;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723891	rs2977670	G	C	0.0	SVM	NS=132;AF=0.878;AC=164;s50=0.11;LBS=2,1,216,87,8,7,0,0;OBS=0,0,1700,541,540,194,1,0;STZ=-0.023;STZ=-1.259;CBZ=-0.006;CBZ=-0.338;QBZ=-0.207;QBZ=-11.288;MBR=0.485;MSR=-0.171;MBZ=26.457;IOZ=0.045;IOH=-4.594;IOD=0.000;IOD=-0.000;AOZ=-570.177;AOZ=-565.583;ABZ=0.398;ABZ=-10.181;BCS=-10018.425;FIC=-0.599;LQR=0.097;MQ10=0.000;MQ10=0.143;MQ20=0.207;MQ30=0.379;MENDEL=0;SVM=-0.78086042;AN=264;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	723918	rs144434834	G	A	0.0	SVM	NS=155;AF=0.016;AC=5;s50=0.32;LBS=2,3,0,0,16,20,0,0;OBS=62,19,0,0,1078,291,1,0;STR=0.014;STZ=0.536;CBR=-0.047;CBZ=-1.778;QBR=0.037;QBZ=1.419;MBR=0.052;MSR=-0.119;MBZ=1.963;IOR=0.132;IOZ=-2.568;IOH=0.004;IOD=0.003;AOI=-38.717;AOZ=-36.149;ABE=0.502;ABZ=0.073;BCS=-304.709;FIC=-0.031;LQR=0.027;MQ0=0.000;MQ10=0.204;MQ20=0.283;MQ30=0.455;MENDEL=0;SVM=-0.54551522;AN=310;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	724189	rs75912128	G	A	0.0	SVM	NS=15;AF=0.033;AC=1;s50=0.03;LBS=1,0,0,0,14,3,0,0;OBS=8,0,0,0,630,80,0,0;STZ=-0.020;STZ=-0.543;CBZ=0.114;CBZ=3.045;QBZ=-0.062;QBZ=-1.673;MBR=-0.086;MSR=-0.141;MBZ=-2.300;IOZ=0.000;IOH=-1.912;IOD=0.000;IOD=0.000;AOZ=-6.762;AOZ=-4.850;ABZ=0.800;ABZ=6.564;BCS=5.348;FIC=0.694;LQR=0.024;MQ10=0.001;MQ10=0.093;MQ20=0.174;MQ30=0.340;MENDEL=0;SVM=-1.5465189;AN=30;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	724285	.	C	T	0.0	PASS	NS=125;AF=0.044;AC=11;s50=0.26;LBS=1,0,30,9,0,1,15,4;OBS=0,0,859,117,0,0,155,19;STR=-0.010;STZ=-0.332;CBR=0.149;CBZ=5.048;QBR=0.002;QBZ=0.053;MBR=-0.213;MSR=-0.163;MBZ=-7.223;IOR=0.000;IOZ=-2.512;IOH=0.000;IOD=0.000;AOI=-82.993;AOZ=-80.481;ABE=0.630;ABZ=6.224;BCS=-428.363;FIC=-0.490;LQR=0.048;MQ0=0.000;MQ10=0.063;MQ20=0.157;MQ30=0.294;MENDEL=0;SVM=1.2445338;AN=250;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	724300	rs12069907	C	T	0.0	PASS	NS=164;AF=0.018;AC=5;s50=0.34;LBS=0,1,15,20,0,1,5,2;OBS=0,0,860,130,0,0,50,7;STZ=-0.002;STZ=-0.052;CBZ=-0.044;CBZ=-1.422;QBZ=-0.019;QBZ=-0.608;MBR=-0.024;MSR=-0.197;MBZ=-0.776;IOZ=0.000;IOH=-2.349;IOD=0.000;IOD=0.000;AOZ=-30.516;AOZ=-28.167;ABZ=0.571;ABZ=2.484;BCS=-213.170;FIC=0.499;LQR=0.039;MQ10=0.000;MQ10=0.050;MQ20=0.130;MQ30=0.248;MENDEL=0;SVM=1.5964452;AN=328;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	724301	.	G	A	0.0	PASS	NS=149;AF=0.007;AC=2;s50=0.31;LBS=2,3,0,0,30,10,0,1;OBS=39,7,1,0,850,155,0,0;STR=0.003;STZ=0.093;CBR=0.195;CBZ=6.325;QBR=-0.086;QBZ=-2.787;MBR=-0.111;MSR=-0.216;MBZ=-3.591;IOR=0.149;IOZ=-2.384;IOH=0.000;IOD=-0.001;AOI=-24.304;AOZ=-21.920;ABE=0.745;ABZ=8.540;BCS=-54.261;FIC=-0.973;LQR=0.041;MQ0=0.000;MQ10=0.051;MQ20=0.127;MQ30=0.246;MENDEL=0;SVM=0.53937463;AN=298;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	724305	.	C	T	0.0	SVM	NS=164;AF=0.003;AC=1;s50=0.34;LBS=0,1,24,12,0,0,1,3;OBS=0,1,749,137,0,1,4,3;STR=0.073;STZ=2.181;CBR=0.020;CBZ=0.589;QBR=-0.046;QBZ=-1.364;MBR=-0.140;MSR=-0.131;MBZ=-4.198;IOR=0.297;IOZ=-2.158;IOH=0.000;IOD=-0.002;AOI=-5.320;AOZ=-3.163;ABE=0.884;ABZ=7.990;BCS=-1.046;FIC=0.681;LQR=0.043;MQ0=0.000;MQ10=0.035;MQ20=0.099;MQ30=0.211;MENDEL=0;SVM=-1.3169386;AN=328;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	724324	rs28692873	G	A	0.0	PASS	NS=193;AF=0.036;AC=14;s50=0.40;LBS=8,1,0,0,13,8,0,0;OBS=131,48,0,0,638,158,0,0;STZ=0.067;STZ=2.091;CBZ=-0.024;CBZ=-0.754;QBZ=-0.054;QBZ=-1.673;MBR=-0.301;MSR=-0.064;MBZ=-9.401;IOZ=0.000;IOH=-2.229;IOD=0.000;IOD=0.000;AOZ=-95.534;AOZ=-93.305;ABZ=0.673;ABZ=9.508;BCS=-610.531;FIC=0.182;LQR=0.030;MQ10=0.000;MQ10=0.070;MQ20=0.147;MQ30=0.308;MENDEL=0;SVM=1.6420111;AN=386;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),DOWNSTREAM(MODIFIER||||RP11-206L10.7|lincRNA|NON_CODING|ENST00000434264|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	726041	rs143850330	G	T	0.0	SVM	NS=9;AF=0.056;AC=1;s50=0.02;LBS=0,0,0,0,0,0,0,0;OBS=0,0,0,0,17,7,2,1;STR=0.056;STZ=0.290;CBR=-0.036;CBZ=-0.189;QBR=0.236;QBZ=1.225;MBR=-0.080;MSR=0.101;MBZ=-0.415;IOR=0.000;IOZ=-0.391;IOH=0.000;IOD=0.000;AOI=-9.311;AOZ=-8.920;ABE=0.738;ABZ=2.502;BCS=-9.889;FIC=0.972;LQR=0.000;MQ0=0.000;MQ10=0.259;MQ20=0.407;MQ30=0.593;MENDEL=0;SVM=-2.2400243;AN=18;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	726082	.	G	C	0.0	SVM	NS=34;AF=0.015;AC=1;s50=0.07;LBS=0,0,0,0,0,0,0,0;OBS=0,0,3,0,36,2,0,0;STR=0.069;STZ=0.445;CBR=0.161;CBZ=1.032;QBR=0.037;QBZ=0.238;MBR=0.026;MSR=0.158;MBZ=0.168;IOR=0.000;IOZ=-0.366;IOH=0.000;IOD=0.000;AOI=-9.854;AOZ=-9.488;ABE=0.791;ABZ=3.161;BCS=-5.487;FIC=0.928;LQR=0.000;MQ0=0.000;MQ10=0.415;MQ20=0.463;MQ30=0.659;MENDEL=0;SVM=-2.1101204;AN=68;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	726481	rs3131980	T	G	0.0	SVM	NS=5;AF=1.000;AC=5;s50=0.00;LBS=0,0,0,0,3,3,0,0;OBS=0,0,0,0,173,31,4,0;STZ=0.023;STZ=0.328;CBZ=-0.212;CBZ=-3.061;QBZ=0.298;QBZ=4.300;MBR=-0.238;MSR=-0.140;MBZ=-3.432;IOZ=0.000;IOH=-1.227;IOD=1.000;IOD=1.000;AOZ=-194.910;AOZ=-193.683;ABZ=0.500;ABZ=0.000;BCS=-1078.647;FIC=-nan;LQR=0.028;MQ10=0.000;MQ10=0.370;MQ20=0.625;MQ30=0.875;MENDEL=0;SVM=-2.9144177;AN=10;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	726685	rs28666865	T	C	0.0	PASS	NS=172;AF=0.012;AC=4;s50=0.36;LBS=0,0,5,1,0,1,24,21;OBS=0,0,74,13,0,0,956,224;STR=-0.024;STZ=-0.850;CBR=0.015;CBZ=0.552;QBR=0.031;QBZ=1.093;MBR=-0.095;MSR=-0.107;MBZ=-3.365;IOR=0.000;IOZ=-2.466;IOH=0.000;IOD=0.000;AOI=-43.410;AOZ=-40.944;ABE=0.744;ABZ=11.250;BCS=-227.714;FIC=-0.085;LQR=0.039;MQ0=0.001;MQ10=0.116;MQ20=0.213;MQ30=0.484;MENDEL=0;SVM=0.39379243;AN=344;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	726697	.	C	A	0.0	SVM	NS=105;AF=0.131;AC=28;s50=0.22;LBS=5,7,16,8,0,0,0,2;OBS=324,83,1008,209,0,0,0,0;STR=0.037;STZ=1.484;CBR=0.156;CBZ=6.305;QBR=0.027;QBZ=1.101;MBR=-0.455;MSR=-0.149;MBZ=-18.339;IOR=0.000;IOZ=-2.646;IOH=0.000;IOD=0.000;AOI=-181.102;AOZ=-178.456;ABE=0.672;ABZ=12.183;BCS=-1303.025;FIC=0.268;LQR=0.022;MQ0=0.001;MQ10=0.107;MQ20=0.197;MQ30=0.411;MENDEL=0;SVM=-0.36123216;AN=210;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	726724	.	G	C	0.0	SVM	NS=23;AF=0.022;AC=1;s50=0.05;LBS=1,2,0,0,6,9,0,2;OBS=1,0,30,9,388,83,3,0;STR=0.042;STZ=0.952;CBR=-0.044;CBZ=-0.993;QBR=-0.020;QBZ=-0.443;MBR=-0.162;MSR=-0.171;MBZ=-3.669;IOR=0.573;IOZ=-1.693;IOH=0.006;IOD=-0.001;AOI=-26.003;AOZ=-24.310;ABE=0.673;ABZ=4.454;BCS=-83.494;FIC=0.250;LQR=0.029;MQ0=0.000;MQ10=0.096;MQ20=0.200;MQ30=0.327;MENDEL=0;SVM=-0.85437418;AN=46;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	726742	.	A	T	0.0	SVM	NS=38;AF=0.013;AC=1;s50=0.08;LBS=16,11,0,0,0,0,0,0;OBS=412,148,1,0,0,0,15,5;STR=-0.001;STZ=-0.029;CBR=0.002;CBZ=0.049;QBR=0.021;QBZ=0.500;MBR=-0.049;MSR=-0.178;MBZ=-1.181;IOR=0.258;IOZ=-1.695;IOH=0.000;IOD=-0.001;AOI=-14.966;AOZ=-13.271;ABE=0.781;ABZ=7.467;BCS=-29.556;FIC=0.390;LQR=0.044;MQ0=0.000;MQ10=0.179;MQ20=0.305;MQ30=0.550;MENDEL=0;SVM=-2.1431422;AN=76;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	726770	rs28715113	G	A	0.0	SVM	NS=208;AF=0.043;AC=18;s50=0.43;LBS=4,2,1,0,19,18,0,2;OBS=189,46,0,0,930,315,0,0;STZ=-0.048;STZ=-1.841;CBZ=0.031;CBZ=1.200;QBZ=-0.060;QBZ=-2.300;MBR=0.213;MSR=-0.180;MBZ=8.192;IOZ=0.000;IOH=-2.613;IOD=0.000;IOD=0.000;AOZ=-106.974;AOZ=-104.361;ABZ=0.638;ABZ=8.979;BCS=-831.521;FIC=0.307;LQR=0.028;MQ10=0.000;MQ10=0.182;MQ20=0.279;MQ30=0.559;MENDEL=0;SVM=-0.45048103;AN=416;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	726778	.	A	T	0.0	SVM	NS=135;AF=0.019;AC=5;s50=0.28;LBS=19,28,1,4,2,6,8,11;OBS=1272,379,0,0,0,0,300,99;STR=0.018;STZ=0.807;CBR=0.160;CBZ=7.231;QBR=-0.143;QBZ=-6.467;MBR=-0.463;MSR=-0.142;MBZ=-20.954;IOR=0.000;IOZ=-3.210;IOH=0.000;IOD=0.000;AOI=-147.585;AOZ=-144.375;ABE=0.638;ABZ=9.311;BCS=-1094.262;FIC=-2.490;LQR=0.031;MQ0=0.000;MQ10=0.140;MQ20=0.226;MQ30=0.516;MENDEL=0;SVM=-0.728977;AN=270;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	726794	rs28454925	C	G	0.0	SVM	NS=275;AF=0.032;AC=18;s50=0.58;LBS=0,0,33,14,2,0,0,0;OBS=0,0,851,294,212,57,1,0;STZ=-0.040;STZ=-1.504;CBZ=-0.065;CBZ=-2.454;QBZ=0.069;QBZ=2.586;MBR=0.111;MSR=-0.123;MBZ=4.188;IOZ=0.113;IOH=-2.795;IOD=0.000;IOD=-0.001;AOZ=-113.721;AOZ=-110.926;ABZ=0.634;ABZ=8.635;BCS=-990.632;FIC=0.036;LQR=0.033;MQ10=0.000;MQ10=0.200;MQ20=0.291;MQ30=0.531;MENDEL=0;SVM=-0.19871825;AN=550;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	726879	.	C	T	0.0	SVM	NS=251;AF=0.002;AC=1;s50=0.52;LBS=0,0,12,6,0,1,1,0;OBS=0,0,341,139,0,1,5,0;STR=-0.050;STZ=-1.109;CBR=0.063;CBZ=1.378;QBR=-0.063;QBZ=-1.395;MBR=0.046;MSR=-0.035;MBZ=1.017;IOR=0.263;IOZ=-1.675;IOH=0.000;IOD=-0.002;AOI=-4.781;AOZ=-3.106;ABE=0.737;ABZ=2.990;BCS=-10.169;FIC=0.453;LQR=0.038;MQ0=0.000;MQ10=0.561;MQ20=0.612;MQ30=0.788;MENDEL=0;SVM=-2.2314539;AN=502;EFF=DOWNSTREAM(MODIFIER||||AL669831.1|protein_coding|CODING|ENST00000358533|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	727913	rs76984760	A	G	0.0	SVM	NS=135;AF=0.283;AC=78;s50=0.30;LBS=371,769,10,7,136,214,11,21;OBS=7390,10504,3,1,4251,7322,2,7;STZ=0.046;STZ=7.830;CBZ=-0.015;CBZ=-2.640;QBZ=0.124;QBZ=21.352;MBR=-0.532;MSR=-0.030;MBZ=-91.370;IOZ=0.070;IOH=-13.136;IOD=0.000;IOD=-0.000;AOZ=-1032.741;AOZ=-1019.605;ABZ=0.607;ABZ=44.750;BCS=-45180.595;FIC=-1.074;LQR=0.048;MQ10=0.000;MQ10=0.323;MQ20=0.430;MQ30=0.776;MENDEL=0;SVM=-1.3272378;AN=270;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	727962	rs74514030	T	C	0.0	SVM	NS=143;AF=0.043;AC=12;s50=0.31;LBS=1,4,39,46,2,8,240,422;OBS=1,6,2447,4178,0,2,5878,8746;STR=0.031;STZ=4.505;CBR=-0.002;CBZ=-0.328;QBR=0.097;QBZ=14.131;MBR=-0.389;MSR=0.040;MBZ=-56.700;IOR=0.076;IOZ=-10.477;IOH=0.001;IOD=0.000;AOI=-740.888;AOZ=-730.411;ABE=0.667;ABZ=56.283;BCS=-23949.132;FIC=-6.472;LQR=0.034;MQ0=0.000;MQ10=0.266;MQ20=0.359;MQ30=0.719;MENDEL=1;SVM=-1.1995671;AN=286;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	728159	rs3131978	C	T	0.0	SVM	NS=359;AF=0.962;AC=691;s50=0.77;LBS=1,7,42,78,0,7,170,389;OBS=0,4,535,993,0,1,8516,17157;STR=0.009;STZ=1.492;CBR=-0.026;CBZ=-4.263;QBR=0.040;QBZ=6.621;MBR=-0.280;MSR=-0.010;MBZ=-46.216;IOR=0.036;IOZ=-11.650;IOH=0.000;IOD=-0.000;AOI=-2565.044;AOZ=-2553.394;ABE=0.462;ABZ=-5.722;BCS=-137623.648;FIC=-0.529;LQR=0.024;MQ0=0.000;MQ10=0.466;MQ20=0.544;MQ30=0.878;MENDEL=0;SVM=-0.056244487;AN=718;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	728242	rs3131977	C	G	0.0	SVM	NS=369;AF=0.975;AC=720;s50=0.80;LBS=18,1,113,32,460,228,23,1;OBS=4,0,597,826,9579,14175,1,1;STR=0.008;STZ=1.220;CBR=0.019;CBZ=2.994;QBR=0.032;QBZ=5.143;MBR=-0.302;MSR=-0.017;MBZ=-47.889;IOR=0.051;IOZ=-10.636;IOH=0.000;IOD=-0.000;AOI=-2596.999;AOZ=-2586.362;ABE=0.458;ABZ=-6.403;BCS=-129643.967;FIC=-1.252;LQR=0.032;MQ0=0.000;MQ10=0.512;MQ20=0.586;MQ30=0.888;MENDEL=0;SVM=-0.019185471;AN=738;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	728259	.	T	C	0.0	SVM	NS=400;AF=0.002;AC=2;s50=0.87;LBS=3,18,21,50,16,27,736,458;OBS=0,2,488,650,0,4,9324,11784;STR=0.006;STZ=0.850;CBR=-0.007;CBZ=-1.060;QBR=0.033;QBZ=4.851;MBR=-0.029;MSR=-0.049;MBZ=-4.337;IOR=0.045;IOZ=-11.299;IOH=0.001;IOD=0.000;AOI=-127.888;AOZ=-116.588;ABE=0.790;ABZ=56.321;BCS=-2282.564;FIC=-27.134;LQR=0.054;MQ0=0.000;MQ10=0.507;MQ20=0.583;MQ30=0.870;MENDEL=0;SVM=-1.0756125;AN=800;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	728278	.	A	G	0.0	PASS	NS=385;AF=0.005;AC=4;s50=0.83;LBS=114,821,4,5,22,120,11,3;OBS=5259,7522,3,0,595,884,1,1;STZ=0.006;STZ=0.675;CBZ=0.024;CBZ=2.908;QBZ=0.016;QBZ=1.866;MBR=0.095;MSR=-0.022;MBZ=11.325;IOZ=0.055;IOH=-9.286;IOD=0.000;IOD=-0.000;AOZ=-193.572;AOZ=-184.286;ABZ=0.783;ABZ=59.119;BCS=-3322.659;FIC=-14.471;LQR=0.070;MQ10=0.000;MQ10=0.428;MQ20=0.515;MQ30=0.804;MENDEL=0;SVM=0.040926649;AN=770;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	728511	.	G	A	0.0	SVM	NS=325;AF=0.001;AC=1;s50=0.70;LBS=148,108,11,2,584,825,25,30;OBS=1177,2425,0,0,4854,8719,3,1;STR=0.026;STZ=3.445;CBR=-0.008;CBZ=-0.993;QBR=0.047;QBZ=6.209;MBR=0.242;MSR=0.024;MBZ=31.696;IOR=0.036;IOZ=-10.338;IOH=0.000;IOD=-0.000;AOI=-414.396;AOZ=-404.058;ABE=0.656;ABZ=43.985;BCS=-12240.162;FIC=-146.147;LQR=0.088;MQ0=0.000;MQ10=0.464;MQ20=0.552;MQ30=0.897;MENDEL=0;SVM=-0.40369522;AN=650;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	728944	.	T	C	0.0	PASS	NS=460;AF=0.001;AC=1;s50=0.99;LBS=3,2,0,3,0,2,31,36;OBS=1,0,9,33,1,0,594,1667;STR=0.013;STZ=0.619;CBR=-0.015;CBZ=-0.727;QBR=-0.024;QBZ=-1.163;MBR=0.107;MSR=0.059;MBZ=5.114;IOR=0.152;IOZ=-3.339;IOH=0.000;IOD=-0.001;AOI=-17.465;AOZ=-14.126;ABE=0.543;ABZ=1.179;BCS=-157.264;FIC=-0.081;LQR=0.029;MQ0=0.000;MQ10=0.309;MQ20=0.397;MQ30=0.753;MENDEL=0;SVM=2.6972258;AN=920;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	728951	rs55744711	C	T	0.0	PASS	NS=460;AF=0.003;AC=2;s50=0.99;LBS=2,0,19,60,0,0,1,6;OBS=0,1,444,1242,0,0,19,62;STZ=0.012;STZ=0.516;CBZ=0.003;CBZ=0.114;QBZ=-0.049;QBZ=-2.044;MBR=0.181;MSR=0.038;MBZ=7.626;IOZ=0.110;IOH=-2.856;IOD=0.000;IOD=-0.001;AOZ=-35.537;AOZ=-32.681;ABZ=0.532;ABZ=1.187;BCS=-319.081;FIC=-0.113;LQR=0.046;MQ10=0.000;MQ10=0.305;MQ20=0.420;MQ30=0.767;MENDEL=0;SVM=3.0768309;AN=920;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	729024	.	A	G	0.0	PASS	NS=458;AF=0.001;AC=1;s50=0.99;LBS=12,55,1,1,1,1,0,0;OBS=281,584,0,1,4,23,0,0;STR=0.061;STZ=1.833;CBR=-0.004;CBZ=-0.111;QBR=-0.037;QBZ=-1.120;MBR=-0.082;MSR=-0.038;MBZ=-2.442;IOR=0.138;IOZ=-2.491;IOH=0.000;IOD=-0.001;AOI=-14.742;AOZ=-12.251;ABE=0.481;ABZ=-0.213;BCS=-2.811;FIC=-2.853;LQR=0.072;MQ0=0.000;MQ10=0.396;MQ20=0.487;MQ30=0.890;MENDEL=0;SVM=1.5280421;AN=916;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	729152	.	G	A	0.0	SVM	NS=422;AF=0.001;AC=1;s50=0.91;LBS=28,24,1,1,29,77,1,4;OBS=306,481,0,0,605,986,0,1;STZ=-0.008;STZ=-0.407;CBZ=-0.031;CBZ=-1.524;QBZ=0.082;QBZ=4.005;MBR=-0.705;MSR=-0.006;MBZ=-34.366;IOZ=0.070;IOH=-3.653;IOD=0.000;IOD=-0.000;AOZ=-253.279;AOZ=-249.626;ABZ=0.453;ABZ=-2.961;BCS=-2524.122;FIC=-77.643;LQR=0.062;MQ10=0.000;MQ10=0.344;MQ20=0.452;MQ30=0.796;MENDEL=0;SVM=-0.21681907;AN=844;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	729300	.	G	A	0.0	PASS	NS=463;AF=0.001;AC=1;s50=1.00;LBS=13,15,1,3,34,22,1,4;OBS=38,76,0,0,912,1214,0,3;STR=0.042;STZ=1.991;CBR=-0.005;CBZ=-0.245;QBR=-0.263;QBZ=-12.447;MBR=-0.381;MSR=0.069;MBZ=-18.052;IOR=0.225;IOZ=-3.191;IOH=0.008;IOD=0.007;AOI=-43.412;AOZ=-40.221;ABE=0.587;ABZ=2.505;BCS=-111.833;FIC=-8.592;LQR=0.036;MQ0=0.000;MQ10=0.093;MQ20=0.184;MQ30=0.387;MENDEL=0;SVM=2.3652936;AN=926;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	729632	rs116720794	C	T	0.0	PASS	NS=448;AF=0.015;AC=14;s50=0.97;LBS=0,0,33,31,0,0,14,13;OBS=0,0,704,651,0,0,410,420;STR=0.025;STZ=1.160;CBR=-0.005;CBZ=-0.238;QBR=0.032;QBZ=1.496;MBR=0.123;MSR=0.027;MBZ=5.744;IOR=0.000;IOZ=-3.319;IOH=0.000;IOD=0.000;AOI=-293.652;AOZ=-290.332;ABE=0.617;ABZ=15.019;BCS=-3177.952;FIC=-1.117;LQR=0.040;MQ0=0.000;MQ10=0.070;MQ20=0.167;MQ30=0.332;MENDEL=0;SVM=4.8361691;AN=896;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	729679	rs4951859	C	G	0.0	SVM	NS=354;AF=0.764;AC=512;s50=0.67;LBS=0,4,50,172,148,1091,0,0;OBS=0,2,3834,4309,7503,7846,0,0;STR=-0.017;STZ=-2.626;CBR=-0.009;CBZ=-1.411;QBR=-0.186;QBZ=-28.539;MBR=0.626;MSR=0.032;MBZ=95.977;IOR=0.013;IOZ=-12.210;IOH=0.000;IOD=-0.000;AOI=-1474.300;AOZ=-1462.091;ABE=0.365;ABZ=-55.156;BCS=-66567.860;FIC=-1.463;LQR=0.059;MQ0=0.000;MQ10=0.290;MQ20=0.385;MQ30=0.689;MENDEL=0;SVM=-0.17549159;AN=708;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	730087	rs148120343	T	C	0.0	PASS	NS=451;AF=0.003;AC=3;s50=0.97;LBS=2,0,14,5,3,2,54,16;OBS=0,0,114,356,1,2,1192,1918;STR=0.098;STZ=5.889;CBR=-0.013;CBZ=-0.785;QBR=-0.089;QBZ=-5.313;MBR=0.298;MSR=-0.003;MBZ=17.857;IOR=0.158;IOZ=-4.000;IOH=0.000;IOD=-0.001;AOI=-139.027;AOZ=-135.028;ABE=0.541;ABZ=3.716;BCS=-1819.612;FIC=-5.301;LQR=0.024;MQ0=0.000;MQ10=0.328;MQ20=0.446;MQ30=0.779;MENDEL=0;SVM=1.5570229;AN=902;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	731221	.	C	T	0.0	PASS	NS=453;AF=0.001;AC=1;s50=0.97;LBS=1,0,73,75,1,5,1,7;OBS=0,1,1012,1058,0,1,36,42;STZ=0.010;STZ=0.469;CBZ=-0.052;CBZ=-2.430;QBZ=-0.041;QBZ=-1.912;MBR=-0.260;MSR=-0.041;MBZ=-12.061;IOZ=0.121;IOH=-3.811;IOD=0.000;IOD=-0.001;AOZ=-27.170;AOZ=-23.360;ABZ=0.428;ABZ=-1.562;BCS=-80.369;FIC=-10.784;LQR=0.068;MQ10=0.000;MQ10=0.150;MQ20=0.291;MQ30=0.699;MENDEL=0;SVM=1.7113026;AN=906;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	731718	rs142557973	T	C	0.0	PASS	NS=397;AF=0.153;AC=112;s50=0.84;LBS=2,5,35,70,1,2,127,101;OBS=0,1,2820,1205,1,0,5498,2267;STR=0.008;STZ=0.842;CBR=0.003;CBZ=0.342;QBR=0.067;QBZ=7.305;MBR=0.436;MSR=-0.019;MBZ=47.357;IOR=0.032;IOZ=-7.800;IOH=0.000;IOD=0.000;AOI=-605.960;AOZ=-598.160;ABE=0.561;ABZ=15.748;BCS=-16346.087;FIC=-0.448;LQR=0.027;MQ0=0.000;MQ10=0.320;MQ20=0.406;MQ30=0.691;MENDEL=0;SVM=1.3159087;AN=794;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	731748	rs142384308	C	T	0.0	SVM	NS=425;AF=0.001;AC=1;s50=0.92;LBS=2,7,85,65,0,2,57,29;OBS=0,0,4242,2543,2,0,719,478;STR=0.018;STZ=1.618;CBR=-0.031;CBZ=-2.808;QBR=-0.087;QBZ=-7.780;MBR=-0.316;MSR=-0.096;MBZ=-28.188;IOR=0.044;IOZ=-6.641;IOH=0.001;IOD=0.000;AOI=-215.850;AOZ=-209.209;ABE=0.628;ABZ=11.574;BCS=-2916.717;FIC=-94.986;LQR=0.029;MQ0=0.000;MQ10=0.399;MQ20=0.494;MQ30=0.742;MENDEL=0;SVM=-0.40822144;AN=850;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	732091	rs140591363	C	G	0.0	PASS	NS=422;AF=0.018;AC=16;s50=0.91;LBS=0,1,22,28,2,9,0,0;OBS=0,0,1434,902,675,411,0,0;STR=-0.007;STZ=-0.426;CBR=-0.017;CBZ=-0.971;QBR=0.118;QBZ=6.901;MBR=-0.665;MSR=-0.035;MBZ=-38.881;IOR=0.000;IOZ=-3.860;IOH=0.000;IOD=0.000;AOI=-330.111;AOZ=-326.251;ABE=0.535;ABZ=2.441;BCS=-4489.024;FIC=-1.533;LQR=0.018;MQ0=0.000;MQ10=0.277;MQ20=0.346;MQ30=0.714;MENDEL=0;SVM=0.62084023;AN=844;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	732120	rs114572157	T	C	0.0	PASS	NS=461;AF=0.011;AC=11;s50=0.99;LBS=5,8,9,8,3,0,197,98;OBS=0,2,206,97,0,0,2368,1251;STR=-0.014;STZ=-0.881;CBR=0.010;CBZ=0.647;QBR=0.098;QBZ=6.110;MBR=0.058;MSR=-0.040;MBZ=3.618;IOR=0.070;IOZ=-5.164;IOH=0.000;IOD=-0.001;AOI=-72.933;AOZ=-67.769;ABE=0.569;ABZ=5.066;BCS=-1176.791;FIC=-0.415;LQR=0.074;MQ0=0.000;MQ10=0.124;MQ20=0.206;MQ30=0.547;MENDEL=0;SVM=4.6363029;AN=922;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	732127	.	C	G	0.0	PASS	NS=441;AF=0.001;AC=1;s50=0.95;LBS=2,1,87,67,4,1,0,0;OBS=1,8,3816,1750,126,57,2,2;STR=-0.001;STZ=-0.056;CBR=0.011;CBZ=0.853;QBR=0.050;QBZ=3.787;MBR=-0.344;MSR=-0.062;MBZ=-26.119;IOR=0.304;IOZ=-5.418;IOH=0.000;IOD=-0.002;AOI=-42.477;AOZ=-37.060;ABE=0.590;ABZ=2.784;BCS=-559.491;FIC=-6.886;LQR=0.027;MQ0=0.000;MQ10=0.071;MQ20=0.163;MQ30=0.511;MENDEL=0;SVM=2.733492;AN=882;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	732142	.	G	T	0.0	SVM	NS=414;AF=0.006;AC=5;s50=0.89;LBS=5,2,0,1,97,61,7,15;OBS=23,3,0,0,6356,2566,111,57;STR=0.016;STZ=1.495;CBR=-0.005;CBZ=-0.460;QBR=-0.053;QBZ=-5.064;MBR=0.085;MSR=0.008;MBZ=8.132;IOR=0.367;IOZ=-6.661;IOH=0.000;IOD=-0.003;AOI=-33.268;AOZ=-26.607;ABE=0.664;ABZ=10.243;BCS=-643.562;FIC=0.067;LQR=0.019;MQ0=0.000;MQ10=0.316;MQ20=0.411;MQ30=0.688;MENDEL=0;SVM=-0.050211914;AN=828;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	732215	rs141179553	C	T	0.0	PASS	NS=423;AF=0.001;AC=1;s50=0.91;LBS=1,2,33,21,2,0,16,28;OBS=0,0,1149,1055,0,0,373,410;STR=0.040;STZ=2.160;CBR=-0.001;CBZ=-0.060;QBR=-0.119;QBZ=-6.525;MBR=0.508;MSR=0.069;MBZ=27.763;IOR=0.000;IOZ=-3.938;IOH=0.000;IOD=0.000;AOI=-234.864;AOZ=-230.926;ABE=0.623;ABZ=15.548;BCS=-2765.781;FIC=-30.215;LQR=0.032;MQ0=0.000;MQ10=0.429;MQ20=0.515;MQ30=0.848;MENDEL=0;SVM=0.53269583;AN=846;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	732809	rs12131618	T	C	0.0	PASS	NS=431;AF=0.001;AC=1;s50=0.93;LBS=1,0,17,6,0,2,16,17;OBS=0,2,331,387,0,0,826,1157;STZ=-0.040;STZ=-2.064;CBZ=-0.008;CBZ=-0.407;QBZ=-0.091;QBZ=-4.713;MBR=0.595;MSR=-0.034;MBZ=30.901;IOZ=0.143;IOH=-3.469;IOD=0.000;IOD=-0.001;AOZ=-242.514;AOZ=-239.045;ABZ=0.549;ABZ=5.408;BCS=-2767.674;FIC=-35.340;LQR=0.020;MQ10=0.000;MQ10=0.539;MQ20=0.605;MQ30=0.902;MENDEL=0;SVM=0.19402524;AN=862;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	732876	.	G	T	0.0	PASS	NS=401;AF=0.006;AC=4;s50=0.86;LBS=11,18,10,17,143,98,15,18;OBS=1,0,0,1,1831,678,63,43;STR=0.060;STZ=3.086;CBR=-0.011;CBZ=-0.537;QBR=-0.066;QBZ=-3.381;MBR=0.172;MSR=-0.091;MBZ=8.811;IOR=0.104;IOZ=-4.155;IOH=0.000;IOD=-0.001;AOI=-33.489;AOZ=-29.335;ABE=0.504;ABZ=0.164;BCS=-368.133;FIC=-0.133;LQR=0.095;MQ0=0.000;MQ10=0.356;MQ20=0.481;MQ30=0.798;MENDEL=0;SVM=0.20104588;AN=802;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	733221	.	G	A	0.0	PASS	NS=463;AF=0.001;AC=1;s50=1.00;LBS=6,2,3,1,55,175,2,5;OBS=26,22,1,0,1465,1311,0,0;STR=-0.003;STZ=-0.182;CBR=-0.028;CBZ=-1.477;QBR=0.034;QBZ=1.822;MBR=0.148;MSR=-0.003;MBZ=7.856;IOR=0.055;IOZ=-4.148;IOH=0.000;IOD=-0.000;AOI=-17.405;AOZ=-13.257;ABE=0.545;ABZ=1.338;BCS=-174.137;FIC=-1.186;LQR=0.078;MQ0=0.000;MQ10=0.486;MQ20=0.569;MQ30=0.871;MENDEL=0;SVM=2.952554;AN=926;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	733312	.	G	C	0.0	SVM	NS=429;AF=0.008;AC=7;s50=0.93;LBS=2,2,1,6,13,45,0,2;OBS=0,1,332,422,1545,1723,0,1;STR=0.025;STZ=1.607;CBR=-0.003;CBZ=-0.216;QBR=0.128;QBZ=8.111;MBR=-0.282;MSR=-0.053;MBZ=-17.875;IOR=0.101;IOZ=-4.233;IOH=0.000;IOD=-0.000;AOI=-210.242;AOZ=-206.009;ABE=0.526;ABZ=2.132;BCS=-3269.438;FIC=-2.686;LQR=0.016;MQ0=0.000;MQ10=0.479;MQ20=0.577;MQ30=0.904;MENDEL=0;SVM=-0.58465155;AN=858;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	733895	rs147170023	A	G	0.0	PASS	NS=449;AF=0.001;AC=1;s50=0.96;LBS=26,49,0,0,4,2,0,1;OBS=1200,1323,0,0,191,180,1,1;STR=-0.026;STZ=-1.410;CBR=-0.004;CBZ=-0.217;QBR=0.003;QBZ=0.154;MBR=-0.211;MSR=-0.020;MBZ=-11.368;IOR=0.117;IOZ=-3.876;IOH=0.000;IOD=-0.001;AOI=-113.975;AOZ=-110.099;ABE=0.618;ABZ=6.344;BCS=-1042.142;FIC=-22.067;LQR=0.027;MQ0=0.000;MQ10=0.358;MQ20=0.456;MQ30=0.817;MENDEL=0;SVM=0.45926246;AN=898;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	733993	.	A	G	0.0	SVM	NS=432;AF=0.001;AC=1;s50=0.93;LBS=209,169,3,0,9,3,5,1;OBS=11017,7621,0,0,291,211,3,0;STR=0.004;STZ=0.521;CBR=0.017;CBZ=2.398;QBR=-0.006;QBZ=-0.822;MBR=-0.105;MSR=-0.076;MBZ=-14.496;IOR=0.034;IOZ=-9.190;IOH=0.001;IOD=0.001;AOI=-72.223;AOZ=-63.034;ABE=0.686;ABZ=18.850;BCS=-1340.516;FIC=-19.725;LQR=0.020;MQ0=0.000;MQ10=0.425;MQ20=0.508;MQ30=0.865;MENDEL=0;SVM=-0.76352129;AN=864;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	733998	rs61770164	C	T	0.0	SVM	NS=354;AF=0.963;AC=673;s50=0.75;LBS=1,5,35,84,1,8,258,240;OBS=0,3,937,536,0,1,12525,7971;STZ=0.013;STZ=1.898;CBZ=0.006;CBZ=0.920;QBZ=-0.006;QBZ=-0.962;MBR=-0.316;MSR=-0.056;MBZ=-46.860;IOZ=0.039;IOH=-9.945;IOD=0.000;IOD=-0.000;AOZ=-2395.698;AOZ=-2385.753;ABZ=0.501;ABZ=0.150;BCS=-110482.354;FIC=-0.541;LQR=0.027;MQ10=0.000;MQ10=0.450;MQ20=0.534;MQ30=0.877;MENDEL=1;SVM=-0.43555264;AN=708;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	734019	.	T	C	0.0	SVM	NS=350;AF=0.001;AC=1;s50=0.75;LBS=40,32,27,30,13,25,635,413;OBS=7,2,432,317,1,4,7183,4345;STR=0.023;STZ=2.538;CBR=-0.015;CBZ=-1.648;QBR=0.193;QBZ=21.431;MBR=-0.079;MSR=-0.066;MBZ=-8.768;IOR=0.142;IOZ=-9.212;IOH=0.001;IOD=-0.000;AOI=-102.359;AOZ=-93.147;ABE=0.703;ABZ=26.714;BCS=-2198.188;FIC=-64.191;LQR=0.083;MQ0=0.000;MQ10=0.477;MQ20=0.565;MQ30=0.864;MENDEL=0;SVM=-1.4931825;AN=700;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	734031	.	T	C	0.0	SVM	NS=397;AF=0.002;AC=2;s50=0.86;LBS=18,10,26,12,16,4,496,117;OBS=5,3,214,164,2,0,4270,4429;STR=-0.030;STZ=-2.862;CBR=-0.023;CBZ=-2.165;QBR=0.044;QBZ=4.173;MBR=0.180;MSR=-0.060;MBZ=17.146;IOR=0.174;IOZ=-6.882;IOH=0.000;IOD=-0.001;AOI=-69.244;AOZ=-62.361;ABE=0.643;ABZ=12.824;BCS=-1271.752;FIC=-14.560;LQR=0.067;MQ0=0.000;MQ10=0.490;MQ20=0.588;MQ30=0.875;MENDEL=0;SVM=-0.18761721;AN=794;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	734033	.	T	G	0.0	SVM	NS=411;AF=0.001;AC=1;s50=0.88;LBS=23,8,24,9,32,7,522,137;OBS=4,0,5,3,121,88,4998,4633;STR=-0.017;STZ=-1.711;CBR=0.005;CBZ=0.453;QBR=0.042;QBZ=4.186;MBR=0.072;MSR=-0.075;MBZ=7.181;IOR=0.182;IOZ=-7.326;IOH=0.000;IOD=-0.001;AOI=-39.243;AOZ=-31.917;ABE=0.689;ABZ=13.143;BCS=-588.148;FIC=-20.688;LQR=0.066;MQ0=0.000;MQ10=0.488;MQ20=0.580;MQ30=0.870;MENDEL=0;SVM=-0.35949876;AN=822;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	734042	rs61770165	G	A	0.0	SVM	NS=388;AF=0.987;AC=757;s50=0.82;LBS=278,311,14,12,95,87,16,15;OBS=9733,5887,2,0,686,425,1,4;STZ=-0.003;STZ=-0.382;CBZ=-0.015;CBZ=-1.897;QBZ=0.055;QBZ=7.074;MBR=-0.307;MSR=-0.056;MBZ=-39.663;IOZ=0.083;IOH=-8.781;IOD=0.001;IOD=0.000;AOZ=-2065.002;AOZ=-2056.221;ABZ=0.506;ABZ=0.710;BCS=-85157.923;FIC=-3.355;LQR=0.044;MQ10=0.000;MQ10=0.517;MQ20=0.598;MQ30=0.867;MENDEL=1;SVM=-0.49557749;AN=776;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	734206	.	A	G	0.0	SVM	NS=464;AF=0.001;AC=1;s50=1.00;LBS=62,147,6,1,1,9,3,3;OBS=2104,2529,1,0,7,2,0,0;STR=-0.028;STZ=-1.876;CBR=0.033;CBZ=2.257;QBR=-0.021;QBZ=-1.460;MBR=0.055;MSR=0.024;MBZ=3.738;IOR=0.037;IOZ=-5.112;IOH=0.000;IOD=-0.000;AOI=-7.038;AOZ=-1.926;ABE=0.911;ABZ=12.431;BCS=31.312;FIC=0.838;LQR=0.045;MQ0=0.000;MQ10=0.661;MQ20=0.762;MQ30=0.930;MENDEL=0;SVM=-1.2832837;AN=928;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	734340	rs146623218	G	A	0.0	PASS	NS=381;AF=0.001;AC=1;s50=0.82;LBS=10,16,13,2,187,137,8,6;OBS=121,88,0,0,3919,2374,2,2;STR=0.016;STZ=1.298;CBR=0.002;CBZ=0.184;QBR=-0.004;QBZ=-0.355;MBR=0.076;MSR=0.025;MBZ=6.136;IOR=0.099;IOZ=-6.046;IOH=0.000;IOD=-0.001;AOI=-45.681;AOZ=-39.634;ABE=0.541;ABZ=2.410;BCS=-727.962;FIC=-13.534;LQR=0.051;MQ0=0.000;MQ10=0.371;MQ20=0.469;MQ30=0.742;MENDEL=0;SVM=0.28466209;AN=762;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	734349	rs141242758	T	C	0.0	PASS	NS=332;AF=0.061;AC=38;s50=0.69;LBS=5,5,42,57,1,7,185,136;OBS=3,4,1617,1007,1,0,3575,2054;STR=0.018;STZ=1.654;CBR=-0.026;CBZ=-2.370;QBR=0.109;QBZ=9.910;MBR=0.344;MSR=-0.011;MBZ=31.254;IOR=0.156;IOZ=-6.568;IOH=0.001;IOD=-0.000;AOI=-466.347;AOZ=-459.779;ABE=0.550;ABZ=10.052;BCS=-10760.091;FIC=-2.069;LQR=0.048;MQ0=0.000;MQ10=0.283;MQ20=0.395;MQ30=0.712;MENDEL=0;SVM=0.60309084;AN=664;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	734422	.	G	A	0.0	PASS	NS=436;AF=0.002;AC=2;s50=0.94;LBS=30,10,2,0,71,59,1,3;OBS=534,315,2,1,3567,2241,3,1;STR=-0.010;STZ=-0.822;CBR=-0.005;CBZ=-0.397;QBR=-0.029;QBZ=-2.346;MBR=0.348;MSR=0.033;MBZ=28.428;IOR=0.166;IOZ=-5.927;IOH=0.001;IOD=-0.000;AOI=-170.225;AOZ=-164.298;ABE=0.661;ABZ=21.814;BCS=-2952.320;FIC=-14.585;LQR=0.025;MQ0=0.000;MQ10=0.538;MQ20=0.622;MQ30=0.877;MENDEL=0;SVM=0.41503364;AN=872;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	734462	rs12564807	G	A	0.0	SVM	NS=257;AF=0.902;AC=336;s50=0.25;LBS=305,379,32,5,48,40,16,4;OBS=8995,7551,4,2,56,86,3,0;STZ=-0.027;STZ=-3.550;CBZ=0.011;CBZ=1.439;QBZ=0.071;QBZ=9.222;MBR=0.002;MSR=0.077;MBZ=0.286;IOZ=0.093;IOH=-9.402;IOD=0.000;IOD=-0.001;AOZ=-2046.780;AOZ=-2037.378;ABZ=0.157;ABZ=-6.976;BCS=-89266.032;FIC=0.965;LQR=0.044;MQ10=0.000;MQ10=0.417;MQ20=0.588;MQ30=0.791;MENDEL=0;SVM=-1.5879518;AN=514;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	734491	rs7518433	T	C	0.0	SVM	NS=434;AF=0.969;AC=825;s50=0.90;LBS=8,8,185,148,4,10,164,131;OBS=2,2,8434,8045,0,1,615,597;STR=-0.002;STZ=-0.295;CBR=0.019;CBZ=2.558;QBR=0.094;QBZ=12.543;MBR=-0.302;MSR=0.005;MBZ=-40.191;IOR=0.048;IOZ=-10.024;IOH=0.000;IOD=0.000;AOI=-1916.999;AOZ=-1906.975;ABE=0.492;ABZ=-1.081;BCS=-87672.174;FIC=-0.861;LQR=0.034;MQ0=0.000;MQ10=0.733;MQ20=0.806;MQ30=0.904;MENDEL=1;SVM=-0.66711577;AN=868;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	735068	rs2427928	A	G	0.0	PASS	NS=390;AF=0.001;AC=1;s50=0.82;LBS=87,179,9,4,24,6,4,1;OBS=2044,2804,2,1,664,1024,4,2;STR=0.025;STZ=2.026;CBR=0.027;CBZ=2.167;QBR=0.078;QBZ=6.332;MBR=-0.445;MSR=0.023;MBZ=-35.982;IOR=0.197;IOZ=-6.064;IOH=0.002;IOD=0.000;AOI=-326.552;AOZ=-320.488;ABE=0.621;ABZ=22.028;BCS=-5943.274;FIC=-82.211;LQR=0.043;MQ0=0.000;MQ10=0.166;MQ20=0.287;MQ30=0.552;MENDEL=0;SVM=0.19024656;AN=780;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	735072	rs2427927	C	G	0.0	PASS	NS=439;AF=0.001;AC=1;s50=0.93;LBS=12,5,103,127,4,5,6,10;OBS=4,0,2220,3281,20,37,1,3;STR=0.010;STZ=0.774;CBR=0.018;CBZ=1.313;QBR=0.027;QBZ=2.016;MBR=-0.162;MSR=0.018;MBZ=-12.050;IOR=0.203;IOZ=-5.596;IOH=0.000;IOD=-0.001;AOI=-16.517;AOZ=-10.921;ABE=0.517;ABZ=0.414;BCS=-123.942;FIC=-0.228;LQR=0.041;MQ0=0.000;MQ10=0.105;MQ20=0.238;MQ30=0.497;MENDEL=0;SVM=2.3699539;AN=878;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|)
1	735398	.	C	T	0.0	SVM	NS=295;AF=0.005;AC=3;s50=0.61;LBS=1,3,200,230,0,8,18,13;OBS=1,3,2598,4999,1,1,443,802;STR=-0.010;STZ=-0.960;CBR=-0.056;CBZ=-5.236;QBR=0.092;QBZ=8.606;MBR=-0.383;MSR=0.032;MBZ=-36.056;IOR=0.095;IOZ=-7.559;IOH=0.001;IOD=0.000;AOI=-198.082;AOZ=-190.523;ABE=0.708;ABZ=34.735;BCS=-3380.150;FIC=-22.839;LQR=0.050;MQ0=0.000;MQ10=0.120;MQ20=0.263;MQ30=0.721;MENDEL=0;SVM=-0.25883161;AN=590;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	735426	rs149284958	G	A	0.0	SVM	NS=162;AF=0.987;AC=287;s50=0.27;LBS=271,350,1,0,72,105,4,12;OBS=3157,5627,4,1,341,560,3,3;STR=0.012;STZ=1.142;CBR=-0.005;CBZ=-0.447;QBR=0.065;QBZ=6.405;MBR=-0.182;MSR=0.039;MBZ=-17.957;IOR=0.153;IOZ=-7.802;IOH=0.000;IOD=-0.001;AOI=-1305.076;AOZ=-1297.274;ABE=0.545;ABZ=4.635;BCS=-44687.099;FIC=-3.337;LQR=0.076;MQ0=0.000;MQ10=0.353;MQ20=0.478;MQ30=0.792;MENDEL=0;SVM=-1.9504766;AN=324;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	735612	.	C	A	0.0	SVM	NS=350;AF=0.001;AC=1;s50=0.74;LBS=0,1,27,81,0,2,4,2;OBS=13,10,948,1678,0,1,12,3;STR=-0.040;STZ=-2.042;CBR=0.002;CBZ=0.113;QBR=-0.068;QBZ=-3.513;MBR=0.061;MSR=-0.135;MBZ=3.128;IOR=0.467;IOZ=-4.229;IOH=0.000;IOD=-0.006;AOI=-8.238;AOZ=-4.009;ABE=0.606;ABZ=1.865;BCS=-86.235;FIC=-2.231;LQR=0.040;MQ0=0.000;MQ10=0.221;MQ20=0.368;MQ30=0.671;MENDEL=0;SVM=-0.49749419;AN=700;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	735682	rs138174321	G	C	0.0	SVM	NS=266;AF=0.017;AC=9;s50=0.56;LBS=2,3,18,16,50,61,2,5;OBS=0,4,344,492,975,1441,0,0;STR=-0.007;STZ=-0.406;CBR=0.037;CBZ=2.123;QBR=-0.047;QBZ=-2.681;MBR=0.369;MSR=-0.110;MBZ=21.064;IOR=0.165;IOZ=-4.487;IOH=0.000;IOD=-0.001;AOI=-218.091;AOZ=-213.604;ABE=0.522;ABZ=2.402;BCS=-3034.055;FIC=-6.423;LQR=0.043;MQ0=0.000;MQ10=0.377;MQ20=0.466;MQ30=0.733;MENDEL=0;SVM=-0.25992903;AN=532;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	735985	rs12405651	G	A	0.0	PASS	NS=389;AF=0.001;AC=1;s50=0.82;LBS=10,6,1,5,32,50,0,2;OBS=77,72,0,1,978,565,0,1;STZ=0.069;STZ=2.824;CBZ=0.013;CBZ=0.525;QBZ=0.044;QBZ=1.810;MBR=-0.218;MSR=-0.026;MBZ=-8.964;IOZ=0.145;IOH=-3.440;IOD=0.001;IOD=0.000;AOZ=-53.287;AOZ=-49.847;ABZ=0.691;ABZ=10.589;BCS=-271.064;FIC=-29.364;LQR=0.055;MQ10=0.000;MQ10=0.072;MQ20=0.169;MQ30=0.378;MENDEL=0;SVM=2.3115797;AN=778;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	736186	rs147133636	G	A	0.0	PASS	NS=451;AF=0.001;AC=1;s50=0.97;LBS=12,3,0,2,49,62,1,1;OBS=175,82,1,0,2925,1587,5,1;STR=-0.015;STZ=-1.048;CBR=-0.028;CBZ=-1.961;QBR=0.003;QBZ=0.240;MBR=0.218;MSR=-0.242;MBZ=15.024;IOR=0.167;IOZ=-5.899;IOH=0.002;IOD=0.000;AOI=-55.521;AOZ=-49.622;ABE=0.587;ABZ=5.853;BCS=-815.256;FIC=-12.778;LQR=0.026;MQ0=0.000;MQ10=0.616;MQ20=0.658;MQ30=0.918;MENDEL=0;SVM=0.14958216;AN=902;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	736289	rs79010578	T	A	0.0	PASS	NS=225;AF=0.208;AC=87;s50=0.45;LBS=77,78,10,16,4,9,166,91;OBS=998,600,1,1,0,1,1351,822;STZ=-0.003;STZ=-0.175;CBZ=-0.019;CBZ=-1.146;QBZ=-0.006;QBZ=-0.348;MBR=0.038;MSR=-0.003;MBZ=2.362;IOZ=0.121;IOH=-4.669;IOD=0.001;IOD=0.000;AOZ=-400.338;AOZ=-395.668;ABZ=0.504;ABZ=0.516;BCS=-6825.014;FIC=-0.056;LQR=0.098;MQ10=0.000;MQ10=0.113;MQ20=0.299;MQ30=0.501;MENDEL=0;SVM=0.59524775;AN=450;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	736309	.	T	C	0.0	PASS	NS=330;AF=0.001;AC=1;s50=0.72;LBS=1,1,14,11,1,4,59,101;OBS=0,0,280,111,1,3,2325,1532;STR=-0.067;STZ=-4.368;CBR=-0.046;CBZ=-2.974;QBR=0.038;QBZ=2.471;MBR=-0.433;MSR=-0.016;MBZ=-28.208;IOR=0.146;IOZ=-4.821;IOH=0.001;IOD=-0.000;AOI=-97.734;AOZ=-92.913;ABE=0.747;ABZ=26.408;BCS=-923.094;FIC=-38.790;LQR=0.042;MQ0=0.000;MQ10=0.134;MQ20=0.245;MQ30=0.560;MENDEL=0;SVM=0.29720785;AN=660;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	736376	rs150029223	T	G	0.0	PASS	NS=452;AF=0.004;AC=4;s50=0.98;LBS=1,3,1,9,8,16,79,72;OBS=0,3,0,0,205,92,1753,771;STR=0.003;STZ=0.172;CBR=-0.035;CBZ=-1.840;QBR=-0.008;QBZ=-0.445;MBR=0.233;MSR=-0.010;MBZ=12.359;IOR=0.156;IOZ=-4.016;IOH=0.000;IOD=-0.001;AOI=-88.551;AOZ=-84.535;ABE=0.543;ABZ=3.037;BCS=-1138.665;FIC=-2.758;LQR=0.058;MQ0=0.000;MQ10=0.330;MQ20=0.448;MQ30=0.816;MENDEL=0;SVM=2.1809146;AN=904;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	736526	.	C	A	0.0	PASS	NS=435;AF=0.013;AC=12;s50=0.94;LBS=43,31,417,84,15,0,23,2;OBS=210,269,7167,8272,1,0,0,1;STR=0.009;STZ=1.111;CBR=-0.003;CBZ=-0.367;QBR=-0.040;QBZ=-4.987;MBR=0.207;MSR=-0.025;MBZ=26.133;IOR=0.025;IOZ=-8.767;IOH=0.000;IOD=-0.000;AOI=-72.014;AOZ=-63.247;ABE=0.684;ABZ=19.899;BCS=-1437.883;FIC=-1.261;LQR=0.035;MQ0=0.000;MQ10=0.570;MQ20=0.637;MQ30=0.900;MENDEL=0;SVM=0.60639345;AN=870;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	736689	.	T	C	0.0	PASS	NS=463;AF=0.003;AC=2;s50=1.00;LBS=4,3,3,9,1,8,62,80;OBS=0,0,57,42,0,0,1619,955;STR=0.021;STZ=1.094;CBR=0.011;CBZ=0.570;QBR=-0.016;QBZ=-0.835;MBR=0.155;MSR=-0.017;MBZ=8.025;IOR=0.000;IOZ=-3.889;IOH=0.000;IOD=0.000;AOI=-33.466;AOZ=-29.577;ABE=0.594;ABZ=4.262;BCS=-350.597;FIC=-0.509;LQR=0.054;MQ0=0.000;MQ10=0.294;MQ20=0.420;MQ30=0.708;MENDEL=0;SVM=4.6108139;AN=926;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	736765	.	C	T	0.0	PASS	NS=459;AF=0.001;AC=1;s50=0.99;LBS=6,0,74,83,0,0,6,2;OBS=1,0,1413,2652,0,0,11,25;STR=0.007;STZ=0.468;CBR=0.008;CBZ=0.504;QBR=0.007;QBZ=0.424;MBR=0.092;MSR=-0.052;MBZ=5.919;IOR=0.040;IOZ=-4.938;IOH=0.000;IOD=-0.000;AOI=-13.288;AOZ=-8.350;ABE=0.546;ABZ=0.688;BCS=-89.703;FIC=-1.621;LQR=0.039;MQ0=0.000;MQ10=0.510;MQ20=0.614;MQ30=0.900;MENDEL=0;SVM=1.4731337;AN=918;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	737059	rs4040696	A	G	0.0	PASS	NS=415;AF=0.007;AC=6;s50=0.90;LBS=50,109,6,3,9,7,2,3;OBS=1989,2107,0,2,225,180,1,2;STZ=-0.040;STZ=-2.684;CBZ=-0.014;CBZ=-0.913;QBZ=-0.014;QBZ=-0.968;MBR=0.213;MSR=-0.025;MBZ=14.315;IOZ=0.185;IOH=-4.674;IOD=0.001;IOD=0.000;AOZ=-103.590;AOZ=-98.916;ABZ=0.677;ABZ=15.029;BCS=-1269.488;FIC=-3.899;LQR=0.037;MQ10=0.000;MQ10=0.374;MQ20=0.489;MQ30=0.887;MENDEL=0;SVM=0.32137781;AN=830;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	737083	rs114937396	A	G	0.0	PASS	NS=398;AF=0.002;AC=2;s50=0.86;LBS=91,88,11,0,12,4,9,4;OBS=1729,1775,2,0,28,21,1,1;STR=-0.018;STZ=-1.075;CBR=0.020;CBZ=1.214;QBR=-0.025;QBZ=-1.494;MBR=0.097;MSR=-0.060;MBZ=5.764;IOR=0.163;IOZ=-4.521;IOH=0.000;IOD=-0.001;AOI=-16.467;AOZ=-11.946;ABE=0.548;ABZ=1.396;BCS=-154.658;FIC=-1.164;LQR=0.052;MQ0=0.000;MQ10=0.153;MQ20=0.271;MQ30=0.739;MENDEL=0;SVM=1.2844801;AN=796;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	737085	rs10454458	C	T	0.0	PASS	NS=397;AF=0.007;AC=6;s50=0.86;LBS=1,7,79,80,0,13,16,25;OBS=0,1,1374,1420,0,1,277,176;STR=-0.083;STZ=-4.721;CBR=0.026;CBZ=1.482;QBR=-0.040;QBZ=-2.276;MBR=0.293;MSR=-0.060;MBZ=16.675;IOR=0.076;IOZ=-4.946;IOH=0.001;IOD=0.000;AOI=-110.938;AOZ=-105.992;ABE=0.667;ABZ=16.296;BCS=-1350.282;FIC=-3.782;LQR=0.058;MQ0=0.000;MQ10=0.186;MQ20=0.303;MQ30=0.742;MENDEL=0;SVM=1.0724471;AN=794;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	738214	rs145807359	C	T	0.0	SVM	NS=370;AF=0.001;AC=1;s50=0.80;LBS=9,7,131,107,4,5,31,43;OBS=0,0,2245,1936,0,0,579,408;STR=-0.039;STZ=-2.816;CBR=-0.015;CBZ=-1.056;QBR=0.097;QBZ=7.000;MBR=-0.156;MSR=-0.028;MBZ=-11.238;IOR=0.000;IOZ=-5.823;IOH=0.000;IOD=0.000;AOI=-202.887;AOZ=-197.063;ABE=0.628;ABZ=16.731;BCS=-3112.879;FIC=-80.458;LQR=0.057;MQ0=0.000;MQ10=0.371;MQ20=0.466;MQ30=0.802;MENDEL=0;SVM=-0.80616005;AN=740;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	738223	rs138388092	T	C	0.0	PASS	NS=459;AF=0.001;AC=1;s50=0.99;LBS=4,9,1,9,0,8,117,154;OBS=0,1,18,13,0,1,1636,1397;STR=-0.008;STZ=-0.437;CBR=0.004;CBZ=0.222;QBR=0.041;QBZ=2.258;MBR=0.130;MSR=-0.029;MBZ=7.202;IOR=0.087;IOZ=-4.599;IOH=0.000;IOD=-0.001;AOI=-12.177;AOZ=-7.578;ABE=0.555;ABZ=1.327;BCS=-99.655;FIC=-1.216;LQR=0.084;MQ0=0.000;MQ10=0.429;MQ20=0.548;MQ30=0.887;MENDEL=0;SVM=1.409989;AN=918;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	738475	rs144508822	G	A	0.0	PASS	NS=414;AF=0.003;AC=3;s50=0.90;LBS=34,25,5,0,83,34,2,2;OBS=719,664,2,0,3060,2535,2,0;STZ=0.022;STZ=1.807;CBZ=-0.011;CBZ=-0.947;QBZ=0.006;QBZ=0.489;MBR=-0.463;MSR=-0.031;MBZ=-38.716;IOZ=0.115;IOH=-5.553;IOD=0.000;IOD=-0.000;AOZ=-292.579;AOZ=-287.026;ABZ=0.646;ABZ=19.801;BCS=-4738.598;FIC=-17.860;LQR=0.025;MQ10=0.000;MQ10=0.129;MQ20=0.219;MQ30=0.457;MENDEL=0;SVM=1.8187948;AN=828;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	738539	rs147999235	T	C	0.0	PASS	NS=413;AF=0.010;AC=9;s50=0.89;LBS=8,40,25,29,3,27,537,371;OBS=3,24,206,130,0,25,4725,3396;STR=-0.012;STZ=-1.129;CBR=0.050;CBZ=4.579;QBR=-0.024;QBZ=-2.233;MBR=0.075;MSR=0.011;MBZ=6.888;IOR=0.452;IOZ=-7.778;IOH=0.003;IOD=-0.003;AOI=-51.873;AOZ=-44.095;ABE=0.597;ABZ=7.514;BCS=-1195.968;FIC=-0.495;LQR=0.102;MQ0=0.000;MQ10=0.224;MQ20=0.339;MQ30=0.656;MENDEL=0;SVM=0.7250312;AN=826;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	738563	.	A	G	0.0	SVM	NS=197;AF=0.002;AC=1;s50=0.42;LBS=130,200,7,1,80,160,8,1;OBS=4822,4031,1,1,1243,1257,0,0;STR=0.039;STZ=4.202;CBR=-0.007;CBZ=-0.772;QBR=-0.076;QBZ=-8.147;MBR=-0.271;MSR=-0.049;MBZ=-28.848;IOR=0.029;IOZ=-8.239;IOH=0.000;IOD=0.000;AOI=-360.478;AOZ=-352.239;ABE=0.725;ABZ=56.968;BCS=-6572.137;FIC=-98.557;LQR=0.048;MQ0=0.000;MQ10=0.146;MQ20=0.251;MQ30=0.610;MENDEL=0;SVM=-0.31661726;AN=394;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	738965	rs2905050	G	A	0.0	PASS	NS=434;AF=0.007;AC=6;s50=0.94;LBS=51,22,9,3,185,176,5,9;OBS=507,425,0,0,1635,1086,0,1;STZ=0.050;STZ=3.045;CBZ=0.030;CBZ=1.789;QBZ=0.138;QBZ=8.315;MBR=-0.590;MSR=-0.091;MBZ=-35.687;IOZ=0.040;IOH=-4.894;IOD=0.000;IOD=-0.000;AOZ=-226.096;AOZ=-221.202;ABZ=0.573;ABZ=5.150;BCS=-3438.203;FIC=-8.131;LQR=0.106;MQ10=0.000;MQ10=0.237;MQ20=0.357;MQ30=0.679;MENDEL=0;SVM=0.50247481;AN=868;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	739123	.	G	A	0.0	PASS	NS=390;AF=0.001;AC=1;s50=0.84;LBS=11,22,7,10,481,224,6,14;OBS=212,78,0,0,16677,6252,4,2;STR=-0.001;STZ=-0.111;CBR=0.009;CBZ=1.434;QBR=-0.034;QBZ=-5.233;MBR=0.043;MSR=-0.047;MBZ=6.589;IOR=0.050;IOZ=-10.708;IOH=0.000;IOD=-0.000;AOI=-41.769;AOZ=-31.061;ABE=0.728;ABZ=19.886;BCS=-640.077;FIC=-13.507;LQR=0.031;MQ0=0.000;MQ10=0.316;MQ20=0.520;MQ30=0.726;MENDEL=0;SVM=0.11023849;AN=780;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	739210	rs141443091	A	G	0.0	SVM	NS=34;AF=0.955;AC=38;s50=0.01;LBS=360,81,0,0,694,608,2,2;OBS=4573,3208,2,0,9302,4837,5,1;STZ=-0.070;STZ=-10.316;CBZ=-0.010;CBZ=-1.474;QBZ=-0.077;QBZ=-11.328;MBR=0.518;MSR=-0.094;MBZ=76.652;IOZ=0.061;IOH=-11.133;IOD=0.000;IOD=-0.000;AOZ=-1482.264;AOZ=-1471.131;ABZ=0.358;ABZ=-57.634;BCS=-61197.817;FIC=-10.513;LQR=0.074;MQ10=0.000;MQ10=0.308;MQ20=0.427;MQ30=0.811;MENDEL=0;SVM=-1.1443962;AN=68;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	739426	rs3131973	A	G	0.0	PASS	NS=458;AF=0.997;AC=913;s50=0.99;LBS=21,13,5,1,176,59,3,0;OBS=88,58,0,0,8688,3970,0,0;STR=-0.019;STZ=-2.188;CBR=-0.010;CBZ=-1.115;QBR=0.069;QBZ=7.825;MBR=-0.117;MSR=-0.043;MBZ=-13.261;IOR=0.000;IOZ=-7.377;IOH=0.000;IOD=0.000;AOI=-1997.797;AOZ=-1990.421;ABE=0.506;ABZ=0.258;BCS=-70398.181;FIC=-1.077;LQR=0.021;MQ0=0.000;MQ10=0.620;MQ20=0.726;MQ30=0.919;MENDEL=0;SVM=0.53350574;AN=916;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	739447	rs146379832	G	A	0.0	SVM	NS=386;AF=0.001;AC=1;s50=0.84;LBS=79,36,38,9,513,164,43,7;OBS=718,260,1,1,5292,2179,4,0;STR=-0.018;STZ=-1.662;CBR=-0.032;CBZ=-2.947;QBR=0.034;QBZ=3.161;MBR=-0.196;MSR=-0.050;MBZ=-18.012;IOR=0.105;IOZ=-7.165;IOH=0.001;IOD=0.000;AOI=-164.775;AOZ=-157.610;ABE=0.631;ABZ=16.528;BCS=-2754.537;FIC=-44.529;LQR=0.086;MQ0=0.000;MQ10=0.516;MQ20=0.618;MQ30=0.855;MENDEL=0;SVM=-1.2586618;AN=772;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	739528	rs3094317	G	A	0.0	SVM	NS=95;AF=0.985;AC=185;s50=0.20;LBS=912,816,120,8,292,73,85,17;OBS=13314,17331,6,3,1903,2324,10,3;STR=0.010;STZ=1.936;CBR=0.005;CBZ=0.925;QBR=-0.084;QBZ=-15.663;MBR=0.035;MSR=-0.063;MBZ=6.499;IOR=0.101;IOZ=-14.014;IOH=0.000;IOD=-0.000;AOI=-2542.053;AOZ=-2528.039;ABE=0.387;ABZ=-27.047;BCS=-151937.648;FIC=-6.246;LQR=0.057;MQ0=0.000;MQ10=0.453;MQ20=0.560;MQ30=0.898;MENDEL=0;SVM=-1.0149825;AN=190;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	739990	.	G	A	0.0	SVM	NS=396;AF=0.001;AC=1;s50=0.84;LBS=117,27,19,0,210,41,16,0;OBS=647,929,1,0,2243,3312,1,1;STR=-0.006;STZ=-0.485;CBR=0.029;CBZ=2.413;QBR=-0.144;QBZ=-12.171;MBR=0.228;MSR=-0.086;MBZ=19.282;IOR=0.076;IOZ=-6.061;IOH=0.000;IOD=-0.000;AOI=-306.809;AOZ=-300.749;ABE=0.579;ABZ=13.498;BCS=-5581.320;FIC=-76.780;LQR=0.052;MQ0=0.000;MQ10=0.385;MQ20=0.480;MQ30=0.802;MENDEL=0;SVM=-0.090600388;AN=792;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	740117	.	C	T	0.0	PASS	NS=434;AF=0.001;AC=1;s50=0.94;LBS=1,1,17,17,2,0,3,3;OBS=1,0,406,233,0,0,77,44;STZ=-0.000;STZ=-0.002;CBZ=0.002;CBZ=0.067;QBZ=-0.014;QBZ=-0.381;MBR=-0.581;MSR=-0.147;MBZ=-16.031;IOZ=0.206;IOH=-1.957;IOD=0.000;IOD=-0.001;AOZ=-72.820;AOZ=-70.863;ABZ=0.269;ABZ=-4.977;BCS=-326.349;FIC=-12.895;LQR=0.050;MQ10=0.000;MQ10=0.188;MQ20=0.313;MQ30=0.624;MENDEL=0;SVM=0.5983083;AN=868;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	740229	.	C	T	0.0	SVM	NS=390;AF=0.001;AC=1;s50=0.84;LBS=2,0,20,24,0,1,14,7;OBS=0,2,1581,1139,2,0,149,137;STR=0.036;STZ=1.966;CBR=0.034;CBZ=1.866;QBR=-0.085;QBZ=-4.639;MBR=0.410;MSR=0.023;MBZ=22.462;IOR=0.227;IOZ=-3.692;IOH=0.000;IOD=-0.001;AOI=-92.814;AOZ=-89.123;ABE=0.681;ABZ=14.542;BCS=-830.437;FIC=-29.025;LQR=0.021;MQ0=0.000;MQ10=0.635;MQ20=0.691;MQ30=0.926;MENDEL=0;SVM=-0.65302118;AN=780;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|)
1	740284	.	C	T	0.0	SVM	NS=237;AF=0.002;AC=1;s50=0.51;LBS=0,0,131,23,0,0,2,2;OBS=4,1,1894,999,1,0,8,4;STZ=0.000;STZ=0.006;CBZ=0.034;CBZ=1.844;QBZ=-0.048;QBZ=-2.599;MBR=0.062;MSR=0.028;MBZ=3.355;IOZ=0.279;IOH=-3.944;IOD=0.000;IOD=-0.002;AOZ=-6.585;AOZ=-2.641;ABZ=0.467;ABZ=-0.438;BCS=-44.658;FIC=0.263;LQR=0.052;MQ10=0.000;MQ10=0.543;MQ20=0.613;MQ30=0.845;MENDEL=0;SVM=-2.2154815;AN=474;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|)
1	740285	.	G	A	0.0	SVM	NS=180;AF=0.019;AC=7;s50=0.39;LBS=15,12,0,0,11,60,0,0;OBS=765,418,9,0,1279,601,2,0;STR=0.035;STZ=1.926;CBR=-0.054;CBZ=-3.001;QBR=0.079;QBZ=4.382;MBR=-0.451;MSR=0.027;MBZ=-24.987;IOR=0.428;IOZ=-3.827;IOH=0.000;IOD=-0.003;AOI=-358.251;AOZ=-354.424;ABE=0.477;ABZ=-2.489;BCS=-4922.306;FIC=-4.969;LQR=0.031;MQ0=0.000;MQ10=0.530;MQ20=0.596;MQ30=0.824;MENDEL=0;SVM=-1.9468273;AN=360;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|),UPSTREAM(LOW||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|)
1	740416	rs116024440	A	G	0.0	PASS	NS=454;AF=0.002;AC=2;s50=0.98;LBS=185,93,2,0,8,9,9,2;OBS=2084,1831,0,1,101,73,1,1;STZ=-0.019;STZ=-1.237;CBZ=-0.015;CBZ=-0.984;QBZ=0.019;QBZ=1.218;MBR=0.112;MSR=-0.008;MBZ=7.172;IOZ=0.116;IOH=-4.797;IOD=0.000;IOD=-0.001;AOZ=-46.497;AOZ=-41.699;ABZ=0.485;ABZ=-0.787;BCS=-678.084;FIC=-2.713;LQR=0.067;MQ10=0.000;MQ10=0.146;MQ20=0.241;MQ30=0.546;MENDEL=0;SVM=3.774351;AN=908;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	740420	.	C	T	0.0	PASS	NS=458;AF=0.004;AC=4;s50=0.99;LBS=0,1,38,68,0,3,2,5;OBS=0,0,2400,2158,17,16,66,73;STR=0.018;STZ=1.203;CBR=-0.002;CBZ=-0.125;QBR=-0.046;QBZ=-3.148;MBR=0.116;MSR=-0.055;MBZ=7.946;IOR=0.590;IOZ=-4.788;IOH=0.000;IOD=-0.007;AOI=-34.298;AOZ=-29.510;ABE=0.589;ABZ=4.380;BCS=-676.022;FIC=-0.380;LQR=0.023;MQ0=0.000;MQ10=0.148;MQ20=0.240;MQ30=0.560;MENDEL=0;SVM=2.9248675;AN=916;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	740743	.	C	T	0.0	PASS	NS=413;AF=0.002;AC=2;s50=0.89;LBS=2,0,22,55,1,2,6,5;OBS=8,10,805,1055,0,0,72,114;STR=0.026;STZ=1.188;CBR=-0.017;CBZ=-0.789;QBR=0.015;QBZ=0.660;MBR=-0.335;MSR=0.022;MBZ=-15.133;IOR=0.624;IOZ=-3.284;IOH=0.000;IOD=-0.009;AOI=-65.095;AOZ=-61.811;ABE=0.592;ABZ=3.264;BCS=-257.107;FIC=-10.895;LQR=0.041;MQ0=0.000;MQ10=0.089;MQ20=0.247;MQ30=0.791;MENDEL=0;SVM=0.76078577;AN=826;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	741201	.	C	T	0.0	SVM	NS=253;AF=0.002;AC=1;s50=0.54;LBS=5,3,277,118,7,5,26,13;OBS=0,1,4074,5327,2,0,358,428;STZ=-0.012;STZ=-1.205;CBZ=0.022;CBZ=2.216;QBZ=-0.010;QBZ=-1.048;MBR=0.260;MSR=0.039;MBZ=26.282;IOZ=0.053;IOH=-7.310;IOD=0.001;IOD=0.001;AOZ=-131.647;AOZ=-124.336;ABZ=0.531;ABZ=3.439;BCS=-3022.327;FIC=-14.600;LQR=0.041;MQ10=0.000;MQ10=0.284;MQ20=0.434;MQ30=0.920;MENDEL=0;SVM=-0.51052402;AN=506;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	741267	rs137997692	T	C	0.0	PASS	NS=416;AF=0.012;AC=10;s50=0.89;LBS=6,12,50,22,1,12,98,189;OBS=1,15,413,340,0,3,2316,1500;STR=0.044;STZ=2.991;CBR=0.020;CBZ=1.367;QBR=-0.047;QBZ=-3.208;MBR=0.386;MSR=-0.001;MBZ=26.089;IOR=0.401;IOZ=-5.240;IOH=0.001;IOD=-0.003;AOI=-163.528;AOZ=-158.288;ABE=0.491;ABZ=-0.941;BCS=-2910.664;FIC=-3.297;LQR=0.073;MQ0=0.000;MQ10=0.301;MQ20=0.440;MQ30=0.867;MENDEL=0;SVM=0.39803781;AN=832;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	741291	.	T	G	0.0	SVM	NS=264;AF=0.004;AC=2;s50=0.56;LBS=5,8,6,1,23,13,167,127;OBS=1,0,0,0,618,382,2304,1415;STR=0.001;STZ=0.093;CBR=0.001;CBZ=0.055;QBR=0.189;QBZ=12.993;MBR=-0.508;MSR=-0.026;MBZ=-34.871;IOR=0.035;IOZ=-5.246;IOH=0.000;IOD=0.000;AOI=-226.323;AOZ=-221.077;ABE=0.643;ABZ=15.114;BCS=-3124.114;FIC=-26.024;LQR=0.065;MQ0=0.000;MQ10=0.171;MQ20=0.307;MQ30=0.824;MENDEL=0;SVM=-0.66727174;AN=528;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	741397	rs142453219	A	G	0.0	SVM	NS=316;AF=0.005;AC=3;s50=0.68;LBS=33,55,1,0,17,12,0,0;OBS=2464,1826,1,0,1578,1192,0,0;STR=0.005;STZ=0.389;CBR=-0.022;CBZ=-1.836;QBR=0.062;QBZ=5.231;MBR=-0.364;MSR=-0.027;MBZ=-30.543;IOR=0.031;IOZ=-5.580;IOH=0.000;IOD=0.000;AOI=-580.251;AOZ=-574.671;ABE=0.555;ABZ=7.464;BCS=-11173.053;FIC=-23.956;LQR=0.016;MQ0=0.000;MQ10=0.564;MQ20=0.642;MQ30=0.926;MENDEL=0;SVM=-2.0473907;AN=632;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	741475	rs2519061	A	G	0.0	PASS	NS=347;AF=0.001;AC=1;s50=0.75;LBS=43,59,1,0,6,2,1,0;OBS=903,772,0,0,64,73,1,1;STR=0.038;STZ=1.622;CBR=-0.025;CBZ=-1.056;QBR=0.013;QBZ=0.555;MBR=-0.292;MSR=-0.056;MBZ=-12.414;IOR=0.166;IOZ=-3.166;IOH=0.000;IOD=-0.001;AOI=-52.516;AOZ=-49.350;ABE=0.703;ABZ=8.767;BCS=-102.788;FIC=-21.914;LQR=0.057;MQ0=0.000;MQ10=0.078;MQ20=0.241;MQ30=0.791;MENDEL=0;SVM=0.68291627;AN=694;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	741558	.	G	T	0.0	SVM	NS=351;AF=0.001;AC=1;s50=0.76;LBS=3,7,1,3,90,124,3,9;OBS=5,0,0,0,2829,1361,25,20;STR=0.027;STZ=1.738;CBR=0.019;CBZ=1.240;QBR=-0.030;QBZ=-1.924;MBR=0.113;MSR=0.001;MBZ=7.344;IOR=0.203;IOZ=-4.431;IOH=0.000;IOD=-0.001;AOI=-15.510;AOZ=-11.078;ABE=0.481;ABZ=-0.476;BCS=-169.224;FIC=-2.156;LQR=0.051;MQ0=0.000;MQ10=0.451;MQ20=0.583;MQ30=0.912;MENDEL=0;SVM=-1.0506321;AN=702;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	741579	rs61770168	T	C	0.0	SVM	NS=280;AF=0.982;AC=529;s50=0.57;LBS=1,1,107,112,1,2,34,41;OBS=0,1,4177,2015,1,3,469,248;STR=-0.013;STZ=-1.116;CBR=-0.038;CBZ=-3.125;QBR=0.081;QBZ=6.762;MBR=-0.343;MSR=0.010;MBZ=-28.548;IOR=0.116;IOZ=-6.199;IOH=0.001;IOD=0.001;AOI=-1163.369;AOZ=-1157.170;ABE=0.623;ABZ=10.177;BCS=-32567.919;FIC=-1.996;LQR=0.041;MQ0=0.000;MQ10=0.473;MQ20=0.593;MQ30=0.914;MENDEL=1;SVM=-1.8571126;AN=560;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	741744	rs142113663	G	A	0.0	SVM	NS=417;AF=0.002;AC=2;s50=0.90;LBS=2,3,1,0,33,20,1,0;OBS=85,63,0,0,1716,1066,0,0;STR=0.019;STZ=1.049;CBR=0.045;CBZ=2.418;QBR=0.020;QBZ=1.069;MBR=-0.168;MSR=-0.015;MBZ=-9.079;IOR=0.000;IOZ=-3.745;IOH=0.000;IOD=0.000;AOI=-49.644;AOZ=-45.900;ABE=0.748;ABZ=13.012;BCS=-277.529;FIC=-7.405;LQR=0.019;MQ0=0.000;MQ10=0.211;MQ20=0.365;MQ30=0.828;MENDEL=1;SVM=-0.018320682;AN=834;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	741795	.	A	G	0.0	SVM	NS=384;AF=0.001;AC=1;s50=0.82;LBS=84,60,3,3,3,3,3,3;OBS=2261,1271,0,0,26,11,1,0;STR=-0.012;STZ=-0.732;CBR=0.057;CBZ=3.382;QBR=-0.075;QBZ=-4.508;MBR=0.063;MSR=-0.059;MBZ=3.768;IOR=0.040;IOZ=-4.895;IOH=0.000;IOD=-0.000;AOI=-13.567;AOZ=-8.672;ABE=0.762;ABZ=5.287;BCS=13.033;FIC=-1.678;LQR=0.040;MQ0=0.000;MQ10=0.245;MQ20=0.406;MQ30=0.804;MENDEL=0;SVM=-0.24357911;AN=768;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	741811	rs2427908	G	A	0.0	PASS	NS=370;AF=0.001;AC=1;s50=0.79;LBS=2,1,2,5,114,88,4,2;OBS=25,10,0,0,3303,1949,0,0;STZ=-0.014;STZ=-0.984;CBZ=0.007;CBZ=0.500;QBZ=-0.009;QBZ=-0.675;MBR=-0.103;MSR=-0.060;MBZ=-7.500;IOZ=0.000;IOH=-5.303;IOD=0.000;IOD=0.000;AOZ=-12.967;AOZ=-7.665;ABZ=0.587;ABZ=1.225;BCS=16.955;FIC=-0.883;LQR=0.037;MQ10=0.000;MQ10=0.161;MQ20=0.311;MQ30=0.787;MENDEL=0;SVM=0.52781594;AN=740;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	741833	rs148581628	C	T	0.0	PASS	NS=434;AF=0.002;AC=2;s50=0.94;LBS=6,10,182,161,4,11,9,17;OBS=3,1,3158,1445,0,0,103,70;STR=0.037;STZ=2.537;CBR=-0.004;CBZ=-0.261;QBR=0.037;QBZ=2.585;MBR=0.181;MSR=0.003;MBZ=12.486;IOR=0.119;IOZ=-5.444;IOH=0.000;IOD=-0.001;AOI=-41.808;AOZ=-36.365;ABE=0.545;ABZ=2.452;BCS=-617.177;FIC=-5.880;LQR=0.072;MQ0=0.000;MQ10=0.381;MQ20=0.496;MQ30=0.863;MENDEL=0;SVM=0.95266211;AN=868;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	742292	.	C	T	0.0	PASS	NS=368;AF=0.001;AC=1;s50=0.79;LBS=3,0,49,44,1,1,14,4;OBS=0,0,579,440,0,0,72,89;STZ=0.083;STZ=2.865;CBZ=0.022;CBZ=0.768;QBZ=0.028;QBZ=0.966;MBR=-0.378;MSR=-0.124;MBZ=-12.984;IOZ=0.000;IOH=-2.789;IOD=0.000;IOD=0.000;AOZ=-69.940;AOZ=-67.151;ABZ=0.673;ABZ=9.230;BCS=-384.595;FIC=-19.428;LQR=0.086;MQ10=0.000;MQ10=0.164;MQ20=0.358;MQ30=0.736;MENDEL=0;SVM=0.088625556;AN=736;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|)
1	744088	.	A	G	0.0	SVM	NS=157;AF=0.018;AC=6;s50=0.34;LBS=196,166,50,29,10,11,1,2;OBS=4668,4248,1899,2022,197,175,0,0;STR=-0.002;STZ=-0.225;CBR=0.010;CBZ=0.968;QBR=-0.053;QBZ=-5.150;MBR=-0.155;MSR=-0.018;MBZ=-14.918;IOR=0.991;IOZ=-4.293;IOH=0.010;IOD=-0.412;AOI=212.097;AOZ=216.390;ABE=0.764;ABZ=18.791;BCS=-21852.044;FIC=-1.933;LQR=0.040;MQ0=0.000;MQ10=0.106;MQ20=0.371;MQ30=1.298;MENDEL=0;SVM=-2.0625611;AN=314;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.6|processed_transcript|NON_CODING|ENST00000429505|),DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|),TRANSCRIPT(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|)
1	745477	.	C	T	0.0	PASS	NS=460;AF=0.001;AC=1;s50=0.99;LBS=0,4,48,89,0,2,3,4;OBS=1,3,1143,2955,0,0,28,71;STR=-0.002;STZ=-0.133;CBR=-0.001;CBZ=-0.068;QBR=0.045;QBZ=2.934;MBR=0.113;MSR=-0.023;MBZ=7.301;IOR=0.158;IOZ=-4.611;IOH=0.005;IOD=0.004;AOI=-28.846;AOZ=-24.235;ABE=0.451;ABZ=-1.842;BCS=-417.661;FIC=-2.155;LQR=0.033;MQ0=0.000;MQ10=0.312;MQ20=0.467;MQ30=0.771;MENDEL=0;SVM=1.565442;AN=920;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|),TRANSCRIPT(MODIFIER||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	746727	rs144595511	G	A	0.0	PASS	NS=340;AF=0.001;AC=1;s50=0.73;LBS=11,10,1,2,55,32,2,3;OBS=224,140,1,0,2228,1912,0,0;STR=-0.042;STZ=-2.828;CBR=0.023;CBZ=1.550;QBR=-0.041;QBZ=-2.726;MBR=0.123;MSR=0.041;MBZ=8.228;IOR=0.039;IOZ=-4.947;IOH=0.000;IOD=-0.000;AOI=-90.131;AOZ=-85.184;ABE=0.673;ABZ=15.989;BCS=-1081.221;FIC=-28.091;LQR=0.023;MQ0=0.000;MQ10=0.175;MQ20=0.322;MQ30=0.587;MENDEL=0;SVM=0.68022901;AN=680;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	747720	.	A	G	0.0	SVM	NS=25;AF=0.111;AC=6;s50=0.06;LBS=657,245,15,6,224,70,12,3;OBS=18509,8349,10,1,9661,3838,11,0;STZ=-0.027;STZ=-5.477;CBZ=0.047;CBZ=9.525;QBZ=0.158;QBZ=31.731;MBR=-0.364;MSR=-0.031;MBZ=-73.193;IOZ=0.088;IOH=-15.119;IOD=0.001;IOD=-0.000;AOZ=-1047.923;AOZ=-1032.804;ABZ=0.668;ABZ=87.971;BCS=-50677.670;FIC=-3.845;LQR=0.029;MQ10=0.000;MQ10=0.177;MQ20=0.345;MQ30=0.628;MENDEL=0;SVM=-1.4837533;AN=50;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000443772|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	748141	rs2427893	G	A	0.0	PASS	NS=328;AF=0.004;AC=3;s50=0.70;LBS=147,50,10,1,220,84,13,1;OBS=1378,558,2,0,5461,2744,0,0;STR=-0.039;STZ=-3.895;CBR=-0.000;CBZ=-0.017;QBR=-0.115;QBZ=-11.625;MBR=-0.380;MSR=-0.062;MBZ=-38.309;IOR=0.034;IOZ=-7.555;IOH=0.000;IOD=-0.000;AOI=-304.583;AOZ=-297.028;ABE=0.731;ABZ=39.099;BCS=-4001.573;FIC=-43.808;LQR=0.047;MQ0=0.000;MQ10=0.123;MQ20=0.258;MQ30=0.634;MENDEL=0;SVM=0.14522334;AN=656;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	748153	.	G	C	0.0	PASS	NS=461;AF=0.006;AC=5;s50=0.99;LBS=22,30,19,31,443,233,11,28;OBS=7,9,90,53,9333,3991,0,4;STR=0.016;STZ=1.874;CBR=0.020;CBZ=2.363;QBR=-0.024;QBZ=-2.788;MBR=0.029;MSR=-0.049;MBZ=3.324;IOR=0.211;IOZ=-8.640;IOH=0.000;IOD=-0.001;AOI=-26.378;AOZ=-17.738;ABE=0.599;ABZ=5.167;BCS=-491.600;FIC=-0.228;LQR=0.051;MQ0=0.000;MQ10=0.131;MQ20=0.269;MQ30=0.691;MENDEL=0;SVM=3.5666778;AN=922;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	748279	rs12184331	A	T	0.0	PASS	NS=398;AF=0.010;AC=7;s50=0.86;LBS=120,65,1,3,4,3,38,25;OBS=3734,1610,0,0,0,0,948,464;STZ=0.024;STZ=1.987;CBZ=-0.017;CBZ=-1.381;QBZ=0.037;QBZ=3.053;MBR=-0.579;MSR=-0.052;MBZ=-47.629;IOZ=0.000;IOH=-6.020;IOD=0.000;IOD=0.000;AOZ=-278.425;AOZ=-272.405;ABZ=0.682;ABZ=20.072;BCS=-4340.919;FIC=-8.150;LQR=0.035;MQ10=0.000;MQ10=0.183;MQ20=0.280;MQ30=0.730;MENDEL=0;SVM=0.54100294;AN=796;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	748487	.	T	C	0.0	PASS	NS=437;AF=0.001;AC=1;s50=0.94;LBS=96,26,58,42,76,27,1688,283;OBS=16,5,396,187,5,5,8744,4859;STR=-0.015;STZ=-1.787;CBR=0.010;CBZ=1.237;QBR=0.020;QBZ=2.381;MBR=0.160;MSR=-0.006;MBZ=19.051;IOR=0.241;IOZ=-9.840;IOH=0.001;IOD=-0.001;AOI=-76.056;AOZ=-66.215;ABE=0.502;ABZ=0.160;BCS=-2245.114;FIC=-17.659;LQR=0.127;MQ0=0.000;MQ10=0.338;MQ20=0.484;MQ30=0.860;MENDEL=0;SVM=0.50445376;AN=874;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	748524	rs144265613	C	T	0.0	SVM	NS=325;AF=0.001;AC=1;s50=0.70;LBS=3,20,312,324,2,21,13,20;OBS=3,7,21126,9475,1,1,54,18;STR=-0.006;STZ=-1.038;CBR=-0.002;CBZ=-0.289;QBR=-0.039;QBZ=-6.826;MBR=0.010;MSR=-0.044;MBZ=1.778;IOR=0.073;IOZ=-12.372;IOH=0.000;IOD=-0.000;AOI=-18.549;AOZ=-6.177;ABE=0.730;ABZ=9.344;BCS=11.984;FIC=-1.075;LQR=0.021;MQ0=0.000;MQ10=0.268;MQ20=0.387;MQ30=0.771;MENDEL=0;SVM=-0.38314801;AN=650;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	748791	rs142597548	A	T	0.0	SVM	NS=326;AF=0.001;AC=1;s50=0.70;LBS=266,150,22,8,6,4,114,150;OBS=15889,6679,8,1,2,1,3375,1642;STZ=0.026;STZ=4.378;CBZ=0.018;CBZ=3.040;QBZ=-0.120;QBZ=-19.860;MBR=0.008;MSR=-0.043;MBZ=1.346;IOZ=0.082;IOH=-11.630;IOD=0.000;IOD=-0.000;AOZ=-509.970;AOZ=-498.340;ABZ=0.739;ABZ=86.282;BCS=-13951.176;FIC=-159.132;LQR=0.024;MQ10=0.000;MQ10=0.408;MQ20=0.512;MQ30=0.853;MENDEL=0;SVM=-1.0926822;AN=652;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	748922	.	C	T	0.0	SVM	NS=359;AF=0.004;AC=2;s50=0.77;LBS=9,0,283,68,4,4,49,11;OBS=1,0,3594,5198,2,0,455,461;STR=-0.052;STZ=-5.139;CBR=0.021;CBZ=2.046;QBR=-0.027;QBZ=-2.695;MBR=-0.225;MSR=0.057;MBZ=-22.201;IOR=0.058;IOZ=-7.021;IOH=0.000;IOD=0.000;AOI=-157.937;AOZ=-150.916;ABE=0.803;ABZ=42.964;BCS=-1094.929;FIC=-19.815;LQR=0.041;MQ0=0.000;MQ10=0.278;MQ20=0.423;MQ30=0.840;MENDEL=0;SVM=-0.73700112;AN=718;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	749078	.	A	G	0.0	SVM	NS=281;AF=0.018;AC=11;s50=0.62;LBS=745,205,31,3,86,110,31,3;OBS=5087,4527,10,0,1105,708,3,1;STR=-0.059;STZ=-6.296;CBR=0.018;CBZ=1.923;QBR=0.015;QBZ=1.589;MBR=-0.450;MSR=0.058;MBZ=-48.091;IOR=0.155;IOZ=-8.738;IOH=0.001;IOD=-0.000;AOI=-247.192;AOZ=-238.454;ABE=0.738;ABZ=48.118;BCS=-4322.146;FIC=-8.100;LQR=0.091;MQ0=0.000;MQ10=0.152;MQ20=0.322;MQ30=0.834;MENDEL=0;SVM=-0.52515839;AN=562;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	749592	rs4606254	G	A	0.0	SVM	NS=35;AF=0.441;AC=30;s50=0.07;LBS=84,153,6,4,255,216,11,9;OBS=8479,7116,1,2,6880,6796,1,2;STR=-0.041;STZ=-6.944;CBR=0.014;CBZ=2.369;QBR=0.118;QBZ=20.155;MBR=-0.415;MSR=0.054;MBZ=-70.966;IOR=0.041;IOZ=-11.916;IOH=0.000;IOD=0.000;AOI=-1529.056;AOZ=-1517.141;ABE=0.426;ABZ=-33.265;BCS=-69360.515;FIC=-0.833;LQR=0.024;MQ0=0.000;MQ10=0.682;MQ20=0.776;MQ30=0.952;MENDEL=0;SVM=-1.7179142;AN=70;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	749644	rs75909375	T	C	0.0	SVM	NS=36;AF=0.013;AC=1;s50=0.08;LBS=8,4,111,168,4,18,164,342;OBS=1,1,3788,6919,3,3,4952,8913;STR=0.003;STZ=0.547;CBR=-0.026;CBZ=-4.074;QBR=-0.001;QBZ=-0.134;MBR=0.397;MSR=0.052;MBZ=62.272;IOR=0.068;IOZ=-10.510;IOH=0.000;IOD=-0.000;AOI=-1187.911;AOZ=-1177.401;ABE=0.539;ABZ=16.001;BCS=-43885.206;FIC=-32.804;LQR=0.031;MQ0=0.000;MQ10=0.294;MQ20=0.434;MQ30=0.801;MENDEL=0;SVM=-1.0400011;AN=72;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	749743	rs4387126	G	A	0.0	SVM	NS=277;AF=0.002;AC=1;s50=0.59;LBS=50,33,11,3,410,1188,13,9;OBS=598,684,2,1,10283,12069,2,1;STR=-0.003;STZ=-0.450;CBR=0.006;CBZ=0.874;QBR=0.006;QBZ=0.949;MBR=-0.189;MSR=-0.008;MBZ=-29.060;IOR=0.041;IOZ=-11.926;IOH=0.000;IOD=-0.000;AOI=-136.337;AOZ=-124.411;ABE=0.722;ABZ=38.652;BCS=-2961.162;FIC=-37.604;LQR=0.066;MQ0=0.000;MQ10=0.440;MQ20=0.568;MQ30=0.913;MENDEL=0;SVM=-1.8360666;AN=554;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	750053	rs11240770	A	C	0.0	SVM	NS=2;AF=1.000;AC=2;s50=0.00;LBS=97,9,510,265,32,8,64,12;OBS=23,9,9414,11855,19,5,43,21;STR=0.021;STZ=3.114;CBR=-0.007;CBZ=-1.007;QBR=0.058;QBZ=8.536;MBR=0.010;MSR=0.012;MBZ=1.470;IOR=0.450;IOZ=-10.294;IOH=1.000;IOD=0.996;AOI=-2356.459;AOZ=-2346.165;ABE=0.500;ABZ=0.000;BCS=-115565.610;FIC=-nan;LQR=0.040;MQ0=0.000;MQ10=0.246;MQ20=0.401;MQ30=0.839;MENDEL=0;SVM=-2.5423911;AN=4;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	750342	.	C	T	0.0	SVM	NS=85;AF=0.822;AC=138;s50=0.17;LBS=30,24,291,230,23,23,283,153;OBS=4,8,1185,1455,1,5,1660,2643;STR=0.062;STZ=5.188;CBR=0.001;CBZ=0.118;QBR=0.092;QBZ=7.698;MBR=-0.656;MSR=-0.064;MBZ=-54.691;IOR=0.255;IOZ=-7.224;IOH=0.001;IOD=-0.001;AOI=-688.430;AOZ=-681.206;ABE=0.593;ABZ=14.865;BCS=-19651.826;FIC=-0.358;LQR=0.121;MQ0=0.000;MQ10=0.547;MQ20=0.693;MQ30=0.916;MENDEL=0;SVM=-2.4523295;AN=170;EFF=DOWNSTREAM(MODIFIER||||RP11-206L10.9|lincRNA|NON_CODING|ENST00000412115|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.8|lincRNA|NON_CODING|ENST00000447500|)
1	750760	.	G	C	0.0	SVM	NS=220;AF=0.002;AC=1;s50=0.48;LBS=2,6,15,6,83,166,0,12;OBS=2,1,79,63,4499,2661,0,2;STR=0.021;STZ=1.772;CBR=0.005;CBZ=0.427;QBR=-0.056;QBZ=-4.763;MBR=0.138;MSR=-0.008;MBZ=11.778;IOR=0.129;IOZ=-5.810;IOH=0.000;IOD=-0.001;AOI=-33.548;AOZ=-27.738;ABE=0.629;ABZ=6.983;BCS=-434.585;FIC=-6.254;LQR=0.036;MQ0=0.000;MQ10=0.644;MQ20=0.699;MQ30=0.845;MENDEL=0;SVM=-1.7048729;AN=440;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	751318	.	A	G	0.0	PASS	NS=439;AF=0.001;AC=1;s50=0.95;LBS=174,58,14,1,21,2,16,3;OBS=3003,1376,0,1,55,28,1,1;STR=0.007;STZ=0.489;CBR=0.026;CBZ=1.716;QBR=0.020;QBZ=1.337;MBR=0.092;MSR=-0.057;MBZ=6.112;IOR=0.098;IOZ=-5.260;IOH=0.000;IOD=-0.001;AOI=-23.201;AOZ=-17.941;ABE=0.308;ABZ=-5.685;BCS=-312.659;FIC=-3.262;LQR=0.054;MQ0=0.000;MQ10=0.332;MQ20=0.459;MQ30=0.806;MENDEL=0;SVM=0.47095311;AN=878;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	751343	rs147927681	T	A	0.0	SVM	NS=280;AF=0.003;AC=2;s50=0.60;LBS=59,63,3,3,1,3,299,117;OBS=3874,1382,0,1,1,0,4423,1520;STZ=0.008;STZ=0.865;CBZ=0.022;CBZ=2.325;QBZ=0.192;QBZ=20.269;MBR=0.490;MSR=-0.043;MBZ=51.832;IOZ=0.033;IOH=-7.721;IOD=0.000;IOD=-0.000;AOZ=-797.258;AOZ=-789.537;ABZ=0.459;ABZ=-10.505;BCS=-22566.343;FIC=-65.887;LQR=0.046;MQ10=0.000;MQ10=0.344;MQ20=0.433;MQ30=0.768;MENDEL=0;SVM=-0.098753774;AN=560;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	751533	.	T	C	0.0	SVM	NS=309;AF=0.003;AC=2;s50=0.68;LBS=2,2,11,6,3,1,143,26;OBS=0,1,737,287,1,0,2014,773;STR=0.003;STZ=0.186;CBR=0.095;CBZ=5.884;QBR=0.150;QBZ=9.238;MBR=-0.369;MSR=-0.055;MBZ=-22.810;IOR=0.080;IOZ=-4.809;IOH=0.000;IOD=-0.000;AOI=-251.177;AOZ=-246.368;ABE=0.609;ABZ=15.336;BCS=-3825.998;FIC=-18.171;LQR=0.047;MQ0=0.000;MQ10=0.442;MQ20=0.537;MQ30=0.847;MENDEL=0;SVM=-1.532574;AN=618;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	751565	.	A	G	0.0	PASS	NS=413;AF=0.001;AC=1;s50=0.89;LBS=30,24,1,1,6,4,0,2;OBS=2540,814,0,0,203,74,5,2;STR=0.016;STZ=0.939;CBR=0.001;CBZ=0.072;QBR=-0.083;QBZ=-4.984;MBR=-0.364;MSR=-0.025;MBZ=-21.925;IOR=0.299;IOZ=-4.013;IOH=0.001;IOD=-0.001;AOI=-81.123;AOZ=-77.110;ABE=0.627;ABZ=6.736;BCS=-592.894;FIC=-24.510;LQR=0.017;MQ0=0.000;MQ10=0.093;MQ20=0.197;MQ30=0.619;MENDEL=0;SVM=1.2016534;AN=826;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	751574	.	G	C	0.0	PASS	NS=438;AF=0.003;AC=3;s50=0.94;LBS=2,1,2,0,84,22,1,1;OBS=4,0,51,13,2397,862,0,0;STR=-0.018;STZ=-1.030;CBR=-0.013;CBZ=-0.759;QBR=0.004;QBZ=0.249;MBR=0.101;MSR=-0.029;MBZ=5.820;IOR=0.196;IOZ=-4.053;IOH=0.000;IOD=-0.001;AOI=-21.778;AOZ=-17.726;ABE=0.582;ABZ=2.970;BCS=-254.664;FIC=-0.141;LQR=0.031;MQ0=0.000;MQ10=0.207;MQ20=0.311;MQ30=0.696;MENDEL=0;SVM=1.9567082;AN=876;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	751580	rs138523666	C	T	0.0	PASS	NS=403;AF=0.002;AC=2;s50=0.87;LBS=2,2,114,31,0,1,35,31;OBS=1,0,2022,772,0,0,752,277;STZ=-0.007;STZ=-0.428;CBZ=0.043;CBZ=2.688;QBZ=-0.019;QBZ=-1.202;MBR=-0.288;MSR=-0.008;MBZ=-17.795;IOZ=0.043;IOH=-4.708;IOD=0.000;IOD=-0.000;AOZ=-257.982;AOZ=-253.273;ABZ=0.558;ABZ=7.001;BCS=-3700.045;FIC=-29.983;LQR=0.052;MQ10=0.000;MQ10=0.187;MQ20=0.295;MQ30=0.681;MENDEL=0;SVM=0.99360476;AN=806;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	751756	rs143225517	T	C	0.0	SVM	NS=305;AF=0.064;AC=34;s50=0.64;LBS=4,2,139,76,15,3,213,79;OBS=0,0,3423,1122,1,0,5486,1813;STR=-0.002;STZ=-0.184;CBR=0.024;CBZ=2.618;QBR=-0.139;QBZ=-15.100;MBR=0.652;MSR=-0.021;MBZ=70.922;IOR=0.017;IOZ=-7.533;IOH=0.000;IOD=0.000;AOI=-707.009;AOZ=-699.476;ABE=0.590;ABZ=25.660;BCS=-17457.891;FIC=-2.451;LQR=0.041;MQ0=0.000;MQ10=0.464;MQ20=0.539;MQ30=0.823;MENDEL=0;SVM=-0.42745863;AN=610;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	751925	.	T	A	0.0	PASS	NS=393;AF=0.004;AC=3;s50=0.85;LBS=13,13,10,4,3,6,234,87;OBS=150,72,0,0,2,2,1048,692;STR=-0.047;STZ=-2.094;CBR=0.036;CBZ=1.604;QBR=0.065;QBZ=2.899;MBR=-0.272;MSR=-0.072;MBZ=-12.036;IOR=0.210;IOZ=-3.870;IOH=0.001;IOD=-0.001;AOI=-69.368;AOZ=-65.498;ABE=0.638;ABZ=7.806;BCS=-673.827;FIC=-4.456;LQR=0.150;MQ0=0.000;MQ10=0.158;MQ20=0.356;MQ30=0.681;MENDEL=0;SVM=0.27618535;AN=786;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	752242	rs12090487	T	A	0.0	PASS	NS=432;AF=0.017;AC=13;s50=0.93;LBS=14,18,5,1,5,6,109,68;OBS=641,454,3,1,0,0,2859,1911;STR=0.011;STZ=0.854;CBR=-0.018;CBZ=-1.345;QBR=0.040;QBZ=3.070;MBR=0.063;MSR=-0.055;MBZ=4.846;IOR=0.117;IOZ=-5.497;IOH=0.000;IOD=-0.001;AOI=-235.035;AOZ=-229.538;ABE=0.588;ABZ=12.679;BCS=-4297.708;FIC=-1.969;LQR=0.034;MQ0=0.000;MQ10=0.254;MQ20=0.327;MQ30=0.540;MENDEL=0;SVM=2.2394919;AN=864;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	752478	rs146277091	G	A	0.0	PASS	NS=445;AF=0.030;AC=28;s50=0.96;LBS=29,15,2,1,89,27,4,5;OBS=212,213,0,0,1272,911,1,1;STR=0.063;STZ=3.194;CBR=-0.020;CBZ=-1.001;QBR=-0.026;QBZ=-1.333;MBR=0.002;MSR=0.004;MBZ=0.082;IOR=0.115;IOZ=-3.929;IOH=0.001;IOD=0.000;AOI=-129.110;AOZ=-125.181;ABE=0.687;ABZ=19.155;BCS=-1470.029;FIC=-0.271;LQR=0.058;MQ0=0.000;MQ10=0.102;MQ20=0.188;MQ30=0.343;MENDEL=0;SVM=4.5498941;AN=890;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	752566	rs3094315	G	A	0.0	PASS	NS=463;AF=0.751;AC=695;s50=0.98;LBS=256,228,3,1,120,38,4,1;OBS=10786,5375,4,1,2889,1420,28,11;STZ=0.003;STZ=0.374;CBZ=0.008;CBZ=1.125;QBZ=0.032;QBZ=4.577;MBR=0.013;MSR=-0.055;MBZ=1.848;IOZ=0.280;IOH=-10.611;IOD=0.000;IOD=-0.002;AOZ=-1762.058;AOZ=-1751.447;ABZ=0.497;ABZ=-0.671;BCS=-81841.647;FIC=-0.104;LQR=0.030;MQ10=0.000;MQ10=0.046;MQ20=0.121;MQ30=0.246;MENDEL=0;SVM=4.2695922;AN=926;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	752593	rs114297979	T	G	0.0	PASS	NS=457;AF=0.029;AC=28;s50=0.99;LBS=15,22,22,15,21,30,438,343;OBS=2,5,6,1,564,267,5281,3043;STR=-0.026;STZ=-2.522;CBR=-0.043;CBZ=-4.069;QBR=0.070;QBZ=6.698;MBR=-0.303;MSR=-0.059;MBZ=-28.984;IOR=0.190;IOZ=-7.705;IOH=0.000;IOD=-0.001;AOI=-130.674;AOZ=-122.969;ABE=0.671;ABZ=16.805;BCS=-2662.342;FIC=-0.385;LQR=0.083;MQ0=0.000;MQ10=0.065;MQ20=0.154;MQ30=0.334;MENDEL=0;SVM=3.9800998;AN=914;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	752617	rs149886465	C	A	0.0	PASS	NS=461;AF=0.028;AC=27;s50=0.99;LBS=14,25,22,29,1,1,1,2;OBS=392,218,1908,1311,0,0,1,0;STR=-0.037;STZ=-2.298;CBR=-0.020;CBZ=-1.237;QBR=-0.041;QBZ=-2.529;MBR=0.158;MSR=0.010;MBZ=9.801;IOR=0.057;IOZ=-4.088;IOH=0.000;IOD=0.000;AOI=-176.975;AOZ=-172.887;ABE=0.737;ABZ=31.551;BCS=-2011.813;FIC=-0.284;LQR=0.023;MQ0=0.000;MQ10=0.229;MQ20=0.312;MQ30=0.595;MENDEL=0;SVM=3.1665358;AN=922;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	752721	rs3131972	A	G	0.0	PASS	NS=464;AF=0.703;AC=659;s50=1.00;LBS=73,112,1,0,463,295,2,1;OBS=4964,1974,1,0,13891,5402,5,0;STZ=-0.004;STZ=-0.722;CBZ=0.004;CBZ=0.628;QBZ=-0.038;QBZ=-6.178;MBR=0.003;MSR=-0.076;MBZ=0.416;IOZ=0.043;IOH=-11.573;IOD=0.000;IOD=-0.000;AOZ=-1943.237;AOZ=-1931.663;ABZ=0.519;ABZ=5.073;BCS=-96089.438;FIC=-0.068;LQR=0.035;MQ10=0.000;MQ10=0.045;MQ20=0.118;MQ30=0.223;MENDEL=0;SVM=4.5490166;AN=928;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	752748	.	G	A	0.0	PASS	NS=464;AF=0.001;AC=1;s50=1.00;LBS=55,5,42,0,659,345,59,2;OBS=33,12,10,1,5910,3165,47,1;STR=-0.011;STZ=-1.094;CBR=0.000;CBZ=0.006;QBR=0.005;QBZ=0.432;MBR=-0.039;MSR=-0.074;MBZ=-3.687;IOR=0.430;IOZ=-8.678;IOH=0.020;IOD=0.013;AOI=-10.666;AOZ=-1.988;ABE=0.391;ABZ=-2.169;BCS=-241.710;FIC=-0.042;LQR=0.104;MQ0=0.000;MQ10=0.043;MQ20=0.105;MQ30=0.207;MENDEL=0;SVM=1.6293628;AN=928;EFF=TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|),UPSTREAM(LOW||||FAM87B|lincRNA|NON_CODING|ENST00000326734|)
1	752796	rs148649543	C	T	0.0	PASS	NS=457;AF=0.025;AC=24;s50=0.99;LBS=6,0,208,59,5,1,26,10;OBS=3,0,1308,1621,1,0,245,318;STR=0.008;STZ=0.495;CBR=-0.039;CBZ=-2.282;QBR=0.044;QBZ=2.618;MBR=-0.027;MSR=-0.031;MBZ=-1.617;IOR=0.160;IOZ=-4.598;IOH=0.000;IOD=-0.001;AOI=-145.918;AOZ=-141.321;ABE=0.661;ABZ=18.261;BCS=-2021.982;FIC=-0.451;LQR=0.080;MQ0=0.000;MQ10=0.163;MQ20=0.237;MQ30=0.391;MENDEL=0;SVM=4.4694719;AN=914;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	752855	.	C	T	0.0	PASS	NS=464;AF=0.002;AC=2;s50=1.00;LBS=5,5,45,78,1,2,8,6;OBS=0,0,1416,1114,0,1,16,23;STR=0.037;STZ=1.858;CBR=0.009;CBZ=0.449;QBR=-0.045;QBZ=-2.260;MBR=-0.011;MSR=-0.068;MBZ=-0.543;IOR=0.072;IOZ=-3.601;IOH=0.000;IOD=-0.000;AOI=-16.007;AOZ=-12.406;ABE=0.493;ABZ=-0.154;BCS=-121.289;FIC=-0.280;LQR=0.051;MQ0=0.000;MQ10=0.132;MQ20=0.217;MQ30=0.443;MENDEL=0;SVM=6.5662028;AN=928;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	752894	rs3131971	T	C	0.0	SVM	NS=178;AF=0.870;AC=245;s50=0.22;LBS=6,7,322,310,5,16,85,73;OBS=1,2,4162,2978,0,3,2426,1312;STZ=0.064;STZ=6.696;CBZ=-0.000;CBZ=-0.005;QBZ=-0.199;QBZ=-20.794;MBR=0.416;MSR=0.020;MBZ=43.406;IOZ=0.087;IOH=-7.957;IOD=0.001;IOD=-0.000;AOZ=-1046.563;AOZ=-1038.606;ABZ=0.395;ABZ=-25.702;BCS=-30798.406;FIC=-2.732;LQR=0.068;MQ10=0.000;MQ10=0.309;MQ20=0.425;MQ30=0.732;MENDEL=0;SVM=-1.0320538;AN=356;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	752897	.	G	T	0.0	SVM	NS=163;AF=0.006;AC=2;s50=0.36;LBS=33,26,56,18,464,280,46,24;OBS=3,2,14,2,4552,3339,90,89;STR=0.022;STZ=1.988;CBR=-0.035;CBZ=-3.132;QBR=0.023;QBZ=2.048;MBR=0.102;MSR=0.022;MBZ=9.137;IOR=0.239;IOZ=-8.161;IOH=0.000;IOD=-0.003;AOI=-31.925;AOZ=-23.764;ABE=0.723;ABZ=14.649;BCS=-410.805;FIC=-3.488;LQR=0.092;MQ0=0.000;MQ10=0.315;MQ20=0.438;MQ30=0.760;MENDEL=0;SVM=-0.98987335;AN=326;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),TRANSCRIPT(MODIFIER||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753110	.	G	A	0.0	PASS	NS=451;AF=0.002;AC=2;s50=0.97;LBS=21,1,26,3,368,415,38,4;OBS=24,27,1,1,3474,3190,7,3;STR=0.009;STZ=0.721;CBR=0.010;CBZ=0.824;QBR=0.009;QBZ=0.712;MBR=0.056;MSR=-0.152;MBZ=4.576;IOR=0.211;IOZ=-6.695;IOH=0.000;IOD=-0.002;AOI=-14.432;AOZ=-7.736;ABE=0.577;ABZ=2.313;BCS=-168.852;FIC=-0.048;LQR=0.107;MQ0=0.000;MQ10=0.425;MQ20=0.519;MQ30=0.718;MENDEL=0;SVM=0.3733108;AN=902;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753269	rs61770172	C	G	0.0	PASS	NS=376;AF=1.000;AC=724;s50=0.75;LBS=3,5,18,25,448,278,0,4;OBS=1,0,15,8,8206,7618,0,0;STZ=0.010;STZ=1.247;CBZ=0.004;CBZ=0.547;QBZ=0.031;QBZ=3.937;MBR=-0.018;MSR=0.026;MBZ=-2.289;IOZ=0.013;IOH=-8.835;IOD=1.000;IOD=1.000;AOZ=-2087.339;AOZ=-2078.504;ABZ=0.500;ABZ=0.000;BCS=-86336.622;FIC=-nan;LQR=0.046;MQ10=0.000;MQ10=0.223;MQ20=0.366;MQ30=0.804;MENDEL=1;SVM=0.21897914;AN=752;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753277	.	G	A	0.0	PASS	NS=458;AF=0.003;AC=3;s50=0.99;LBS=6,8,5,1,152,204,5,6;OBS=55,63,0,0,5522,5313,1,0;STR=0.009;STZ=0.939;CBR=0.010;CBZ=1.048;QBR=-0.022;QBZ=-2.263;MBR=0.026;MSR=0.011;MBZ=2.737;IOR=0.017;IOZ=-7.520;IOH=0.000;IOD=-0.000;AOI=-25.642;AOZ=-18.122;ABE=0.661;ABZ=8.235;BCS=-294.709;FIC=-1.423;LQR=0.033;MQ0=0.000;MQ10=0.223;MQ20=0.369;MQ30=0.784;MENDEL=0;SVM=2.8486424;AN=916;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753379	.	C	A	0.0	SVM	NS=352;AF=0.003;AC=2;s50=0.76;LBS=64,25,530,215,14,13,6,10;OBS=368,195,3770,1180,4,1,2,0;STR=0.076;STZ=5.625;CBR=0.160;CBZ=11.900;QBR=0.114;QBZ=8.455;MBR=-0.267;MSR=-0.076;MBZ=-19.804;IOR=0.142;IOZ=-6.501;IOH=0.001;IOD=-0.001;AOI=-105.861;AOZ=-99.359;ABE=0.716;ABZ=24.575;BCS=-1365.553;FIC=-23.905;LQR=0.131;MQ0=0.000;MQ10=0.115;MQ20=0.258;MQ30=0.652;MENDEL=0;SVM=-0.7414091;AN=704;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753397	.	G	A	0.0	PASS	NS=455;AF=0.003;AC=2;s50=0.98;LBS=6,10,0,4,88,166,0,3;OBS=90,68,1,2,7445,5441,1,2;STR=0.002;STZ=0.217;CBR=0.021;CBZ=2.411;QBR=-0.025;QBZ=-2.857;MBR=0.038;MSR=-0.200;MBZ=4.368;IOR=0.084;IOZ=-8.107;IOH=0.001;IOD=0.000;AOI=-30.224;AOZ=-22.117;ABE=0.674;ABZ=9.861;BCS=-416.745;FIC=-2.461;LQR=0.020;MQ0=0.000;MQ10=0.507;MQ20=0.607;MQ30=0.826;MENDEL=0;SVM=0.52080418;AN=910;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753405	rs61770173	C	A	0.0	SVM	NS=368;AF=0.846;AC=620;s50=0.77;LBS=733,703,163,165,12,37,13,19;OBS=6297,3696,1431,913,2,7,10,2;STZ=-0.016;STZ=-1.773;CBZ=-0.017;CBZ=-1.839;QBZ=-0.005;QBZ=-0.518;MBR=-0.544;MSR=-0.130;MBZ=-60.456;IOZ=0.172;IOH=-10.035;IOD=0.002;IOD=0.000;AOZ=-1157.903;AOZ=-1147.867;ABZ=0.454;ABZ=-8.506;BCS=-47852.907;FIC=-0.406;LQR=0.125;MQ10=0.000;MQ10=0.534;MQ20=0.622;MQ30=0.815;MENDEL=1;SVM=-0.79623114;AN=736;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753425	rs3131970	T	C	0.0	SVM	NS=362;AF=0.834;AC=601;s50=0.76;LBS=22,11,308,295,32,9,293,70;OBS=3,1,4903,6654,5,3,1139,1512;STR=0.004;STZ=0.510;CBR=0.000;CBZ=0.024;QBR=0.085;QBZ=10.141;MBR=-0.750;MSR=-0.018;MBZ=-89.356;IOR=0.134;IOZ=-8.810;IOH=0.001;IOD=0.000;AOI=-1523.358;AOZ=-1514.548;ABE=0.443;ABZ=-10.281;BCS=-58539.544;FIC=-0.257;LQR=0.064;MQ0=0.000;MQ10=0.754;MQ20=0.795;MQ30=0.909;MENDEL=2;SVM=-1.0862158;AN=724;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753456	.	T	C	0.0	PASS	NS=456;AF=0.001;AC=1;s50=0.98;LBS=30,12,29,10,24,18,536,272;OBS=3,1,8,5,1,3,4838,4754;STR=-0.008;STZ=-0.768;CBR=0.007;CBZ=0.719;QBR=-0.005;QBZ=-0.481;MBR=-0.008;MSR=-0.101;MBZ=-0.815;IOR=0.120;IOZ=-7.652;IOH=0.000;IOD=-0.001;AOI=-9.012;AOZ=-1.360;ABE=0.609;ABZ=1.641;BCS=7.458;FIC=-0.041;LQR=0.081;MQ0=0.000;MQ10=0.298;MQ20=0.413;MQ30=0.676;MENDEL=0;SVM=0.51245587;AN=912;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753461	rs151123661	C	T	0.0	SVM	NS=291;AF=0.003;AC=2;s50=0.62;LBS=34,9,500,227,31,20,63,19;OBS=7,0,4615,4091,8,2,702,869;STR=0.060;STZ=6.076;CBR=-0.010;CBZ=-0.975;QBR=0.080;QBZ=8.079;MBR=-0.525;MSR=-0.084;MBZ=-53.200;IOR=0.230;IOZ=-7.528;IOH=0.001;IOD=-0.001;AOI=-245.521;AOZ=-237.993;ABE=0.593;ABZ=14.072;BCS=-5631.838;FIC=-30.312;LQR=0.073;MQ0=0.000;MQ10=0.173;MQ20=0.294;MQ30=0.586;MENDEL=0;SVM=-0.067784388;AN=582;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753474	rs2073814	C	G	0.0	SVM	NS=75;AF=0.376;AC=50;s50=0.12;LBS=3,5,90,150,194,551,4,5;OBS=1,2,3220,2771,4927,3446,0,4;STZ=-0.051;STZ=-6.078;CBZ=0.012;CBZ=1.414;QBZ=-0.068;QBZ=-8.105;MBR=0.496;MSR=-0.043;MBZ=59.398;IOZ=0.074;IOH=-9.360;IOD=0.000;IOD=-0.000;AOZ=-1045.849;AOZ=-1036.489;ABZ=0.427;ABZ=-22.240;BCS=-35905.129;FIC=-0.796;LQR=0.064;MQ10=0.000;MQ10=0.271;MQ20=0.392;MQ30=0.695;MENDEL=0;SVM=-0.75309134;AN=150;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753492	.	G	A	0.0	SVM	NS=296;AF=0.005;AC=3;s50=0.63;LBS=41,62,4,2,77,263,1,11;OBS=771,759,1,1,4733,3582,1,2;STR=0.048;STZ=4.728;CBR=-0.036;CBZ=-3.547;QBR=-0.026;QBZ=-2.587;MBR=0.131;MSR=-0.034;MBZ=13.011;IOR=0.091;IOZ=-7.061;IOH=0.000;IOD=-0.000;AOI=-257.286;AOZ=-250.225;ABE=0.697;ABZ=37.525;BCS=-4555.309;FIC=-29.861;LQR=0.043;MQ0=0.000;MQ10=0.371;MQ20=0.502;MQ30=0.825;MENDEL=0;SVM=-0.42061796;AN=592;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753538	.	G	A	0.0	SVM	NS=311;AF=0.002;AC=1;s50=0.67;LBS=6,9,0,9,128,238,1,5;OBS=35,30,0,0,3153,2849,0,1;STR=-0.003;STZ=-0.203;CBR=-0.040;CBZ=-3.138;QBR=0.011;QBZ=0.878;MBR=0.044;MSR=0.095;MBZ=3.440;IOR=0.027;IOZ=-5.989;IOH=0.000;IOD=-0.000;AOI=-18.496;AOZ=-12.507;ABE=0.571;ABZ=2.365;BCS=-192.564;FIC=-1.169;LQR=0.059;MQ0=0.000;MQ10=0.307;MQ20=0.429;MQ30=0.651;MENDEL=0;SVM=-0.29618116;AN=622;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753541	rs2073813	G	A	0.0	PASS	NS=308;AF=0.137;AC=75;s50=0.62;LBS=133,77,1,7,37,152,1,2;OBS=1612,1332,1,0,1755,1751,1,0;STZ=-0.047;STZ=-3.761;CBZ=0.009;CBZ=0.710;QBZ=-0.070;QBZ=-5.641;MBR=0.333;MSR=0.075;MBZ=26.769;IOZ=0.049;IOH=-6.225;IOD=0.000;IOD=0.000;AOZ=-554.422;AOZ=-548.197;ABZ=0.523;ABZ=4.493;BCS=-11901.039;FIC=-0.988;LQR=0.058;MQ10=0.000;MQ10=0.291;MQ20=0.409;MQ30=0.620;MENDEL=0;SVM=0.21110312;AN=616;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753699	.	C	T	0.0	PASS	NS=457;AF=0.002;AC=2;s50=0.99;LBS=1,4,51,75,4,2,9,6;OBS=0,1,2978,3580,0,0,77,99;STR=0.005;STZ=0.429;CBR=0.006;CBZ=0.517;QBR=-0.041;QBZ=-3.370;MBR=0.094;MSR=-0.014;MBZ=7.741;IOR=0.031;IOZ=-5.560;IOH=0.000;IOD=-0.000;AOI=-42.099;AOZ=-36.539;ABE=0.581;ABZ=4.522;BCS=-606.267;FIC=-3.686;LQR=0.021;MQ0=0.000;MQ10=0.348;MQ20=0.440;MQ30=0.688;MENDEL=0;SVM=2.8256557;AN=914;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753794	.	C	T	0.0	PASS	NS=464;AF=0.001;AC=1;s50=1.00;LBS=1,11,35,153,3,9,2,10;OBS=0,2,2129,2810,0,2,8,5;STR=-0.019;STZ=-1.328;CBR=0.025;CBZ=1.776;QBR=-0.052;QBZ=-3.672;MBR=0.002;MSR=0.112;MBZ=0.166;IOR=0.126;IOZ=-5.274;IOH=0.000;IOD=-0.001;AOI=-7.678;AOZ=-2.403;ABE=0.613;ABZ=1.651;BCS=-4.236;FIC=-0.074;LQR=0.039;MQ0=0.000;MQ10=0.245;MQ20=0.353;MQ30=0.572;MENDEL=0;SVM=2.5819573;AN=928;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	753849	rs58324164	G	T	0.0	SVM	NS=277;AF=0.706;AC=342;s50=0.43;LBS=5,16,16,15,32,93,211,298;OBS=0,3,1,5,1861,2304,4309,5161;STZ=-0.008;STZ=-0.885;CBZ=0.045;CBZ=5.253;QBZ=-0.018;QBZ=-2.134;MBR=-0.392;MSR=0.052;MBZ=-45.802;IOZ=0.106;IOH=-8.715;IOD=0.001;IOD=-0.000;AOZ=-1264.134;AOZ=-1255.418;ABZ=0.483;ABZ=-3.308;BCS=-45584.595;FIC=-0.266;LQR=0.044;MQ10=0.000;MQ10=0.407;MQ20=0.519;MQ30=0.725;MENDEL=2;SVM=-0.8819562;AN=554;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754063	rs12184312	G	T	0.0	PASS	NS=461;AF=0.028;AC=27;s50=0.99;LBS=5,5,3,2,77,89,33,27;OBS=4,6,0,0,4197,4481,565,612;STR=0.002;STZ=0.231;CBR=-0.014;CBZ=-1.341;QBR=-0.047;QBZ=-4.680;MBR=0.104;MSR=-0.030;MBZ=10.371;IOR=0.161;IOZ=-7.213;IOH=0.001;IOD=-0.000;AOI=-194.665;AOZ=-187.452;ABE=0.684;ABZ=31.058;BCS=-3984.489;FIC=-0.161;LQR=0.022;MQ0=0.000;MQ10=0.177;MQ20=0.265;MQ30=0.488;MENDEL=0;SVM=3.7924259;AN=922;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754105	rs12184325	C	T	0.0	PASS	NS=457;AF=0.025;AC=24;s50=0.99;LBS=2,14,15,139,0,11,26,29;OBS=0,1,2692,2652,0,4,391,298;STR=-0.041;STZ=-3.147;CBR=0.030;CBZ=2.336;QBR=-0.071;QBZ=-5.505;MBR=0.079;MSR=-0.047;MBZ=6.137;IOR=0.131;IOZ=-5.763;IOH=0.001;IOD=0.001;AOI=-143.310;AOZ=-137.547;ABE=0.702;ABZ=26.516;BCS=-2170.467;FIC=-0.315;LQR=0.033;MQ0=0.000;MQ10=0.161;MQ20=0.258;MQ30=0.480;MENDEL=0;SVM=2.8635325;AN=914;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754121	rs12184335	T	G	0.0	PASS	NS=452;AF=0.025;AC=24;s50=0.98;LBS=9,52,6,33,36,89,168,267;OBS=1,8,0,9,321,232,2083,1832;STR=-0.032;STZ=-2.133;CBR=-0.001;CBZ=-0.052;QBR=0.018;QBZ=1.179;MBR=-0.169;MSR=-0.034;MBZ=-11.311;IOR=0.370;IOZ=-5.487;IOH=0.005;IOD=0.001;AOI=-118.097;AOZ=-112.610;ABE=0.726;ABZ=22.453;BCS=-1589.203;FIC=-0.796;LQR=0.111;MQ0=0.000;MQ10=0.086;MQ20=0.186;MQ30=0.369;MENDEL=0;SVM=3.3488364;AN=904;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754154	.	G	A	0.0	PASS	NS=463;AF=0.002;AC=2;s50=1.00;LBS=11,29,13,25,165,244,11,9;OBS=10,40,6,1,2393,4863,0,0;STR=0.022;STZ=1.877;CBR=0.023;CBZ=1.932;QBR=-0.051;QBZ=-4.334;MBR=-0.084;MSR=0.182;MBZ=-7.153;IOR=0.116;IOZ=-7.302;IOH=0.000;IOD=-0.001;AOI=-14.677;AOZ=-7.375;ABE=0.640;ABZ=2.927;BCS=-16.402;FIC=-0.050;LQR=0.058;MQ0=0.000;MQ10=0.088;MQ20=0.215;MQ30=0.371;MENDEL=0;SVM=3.3886083;AN=926;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754158	.	T	C	0.0	PASS	NS=462;AF=0.001;AC=1;s50=0.99;LBS=17,22,20,46,10,35,254,591;OBS=1,7,5,39,0,8,1987,4639;STR=0.032;STZ=2.595;CBR=-0.005;CBZ=-0.380;QBR=-0.041;QBZ=-3.313;MBR=-0.090;MSR=0.176;MBZ=-7.352;IOR=0.256;IOZ=-6.803;IOH=0.000;IOD=-0.002;AOI=-12.878;AOZ=-6.075;ABE=0.747;ABZ=4.827;BCS=-34.968;FIC=-0.777;LQR=0.120;MQ0=0.000;MQ10=0.086;MQ20=0.205;MQ30=0.359;MENDEL=0;SVM=2.5648747;AN=924;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754163	rs12184336	T	C	0.0	PASS	NS=439;AF=0.010;AC=9;s50=0.95;LBS=30,2,46,98,13,7,356,665;OBS=4,8,162,343,2,8,2274,6004;STZ=-0.024;STZ=-2.264;CBZ=-0.031;CBZ=-2.872;QBZ=0.033;QBZ=3.062;MBR=-0.140;MSR=0.148;MBZ=-13.079;IOZ=0.230;IOH=-8.541;IOD=0.005;IOD=0.002;AOZ=-74.813;AOZ=-66.273;ABZ=0.669;ABZ=17.297;BCS=-1489.615;FIC=-2.347;LQR=0.117;MQ10=0.000;MQ10=0.081;MQ20=0.199;MQ30=0.356;MENDEL=0;SVM=2.0796212;AN=878;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754182	rs3131969	A	G	0.0	PASS	NS=439;AF=0.738;AC=651;s50=0.93;LBS=121,297,32,34,458,289,19,6;OBS=1189,2625,2,4,2987,9079,3,0;STR=0.062;STZ=7.853;CBR=0.000;CBZ=0.011;QBR=0.037;QBZ=4.601;MBR=-0.101;MSR=0.151;MBZ=-12.773;IOR=0.089;IOZ=-9.641;IOH=0.001;IOD=0.000;AOI=-1458.215;AOZ=-1448.575;ABE=0.539;ABZ=7.495;BCS=-60181.275;FIC=-0.074;LQR=0.068;MQ0=0.000;MQ10=0.084;MQ20=0.196;MQ30=0.353;MENDEL=0;SVM=3.0627725;AN=878;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754192	rs3131968	A	G	0.0	PASS	NS=438;AF=0.738;AC=648;s50=0.93;LBS=180,339,39,21,388,958,32,6;OBS=1572,3750,6,1,4033,12105,3,0;STR=0.045;STZ=6.552;CBR=0.032;CBZ=4.690;QBR=-0.023;QBZ=-3.441;MBR=-0.132;MSR=0.121;MBZ=-19.276;IOR=0.064;IOZ=-12.163;IOH=0.001;IOD=0.000;AOI=-1550.337;AOZ=-1538.174;ABE=0.536;ABZ=8.853;BCS=-77801.854;FIC=-0.053;LQR=0.080;MQ0=0.000;MQ10=0.079;MQ20=0.183;MQ30=0.374;MENDEL=0;SVM=2.9189283;AN=876;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754200	.	G	C	0.0	PASS	NS=459;AF=0.001;AC=1;s50=0.99;LBS=6,3,17,14,166,280,5,3;OBS=2,5,34,117,5671,14205,2,3;STR=0.011;STZ=1.588;CBR=0.024;CBZ=3.345;QBR=-0.029;QBZ=-4.094;MBR=-0.135;MSR=0.130;MBZ=-19.146;IOR=0.118;IOZ=-9.441;IOH=0.000;IOD=-0.001;AOI=-27.148;AOZ=-17.707;ABE=0.741;ABZ=9.192;BCS=-56.340;FIC=-2.120;LQR=0.023;MQ0=0.000;MQ10=0.079;MQ20=0.180;MQ30=0.330;MENDEL=0;SVM=2.9579556;AN=918;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754211	rs12184313	G	A	0.0	PASS	NS=445;AF=0.012;AC=11;s50=0.96;LBS=50,48,25,5,343,156,16,5;OBS=248,548,1,1,3709,9878,3,0;STZ=-0.020;STZ=-2.383;CBZ=0.019;CBZ=2.263;QBZ=-0.047;QBZ=-5.604;MBR=-0.022;MSR=0.123;MBZ=-2.679;IOZ=0.065;IOH=-8.519;IOD=0.000;IOD=0.000;AOZ=-116.398;AOZ=-107.879;ABZ=0.664;ABZ=22.034;BCS=-2634.190;FIC=-1.623;LQR=0.040;MQ10=0.000;MQ10=0.096;MQ20=0.206;MQ30=0.438;MENDEL=0;SVM=3.1171123;AN=890;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754334	rs3131967	T	C	0.0	PASS	NS=447;AF=0.733;AC=658;s50=0.95;LBS=3,9,135,769,4,17,271,290;OBS=0,1,11134,9139,0,6,4654,4661;STR=-0.046;STZ=-7.939;CBR=0.017;CBZ=2.984;QBR=0.081;QBZ=13.848;MBR=0.480;MSR=-0.031;MBZ=82.644;IOR=0.045;IOZ=-12.240;IOH=0.000;IOD=0.000;AOI=-1931.462;AOZ=-1919.222;ABE=0.385;ABZ=-39.881;BCS=-93913.666;FIC=-0.852;LQR=0.047;MQ0=0.000;MQ10=0.185;MQ20=0.265;MQ30=0.516;MENDEL=0;SVM=1.2381565;AN=894;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754345	.	C	A	0.0	PASS	NS=462;AF=0.001;AC=1;s50=0.99;LBS=27,37,146,188,14,17,13,18;OBS=137,192,7785,7512,22,37,1,3;STR=0.027;STZ=3.316;CBR=0.001;CBZ=0.148;QBR=-0.085;QBZ=-10.668;MBR=-0.250;MSR=-0.015;MBZ=-31.194;IOR=0.491;IOZ=-8.046;IOH=0.000;IOD=-0.004;AOI=-50.391;AOZ=-42.345;ABE=0.776;ABZ=9.968;BCS=-386.229;FIC=-7.413;LQR=0.025;MQ0=0.000;MQ10=0.054;MQ20=0.139;MQ30=0.321;MENDEL=0;SVM=2.6810274;AN=924;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754396	rs115791529	T	C	0.0	PASS	NS=464;AF=0.009;AC=9;s50=1.00;LBS=3,3,6,13,4,2,85,222;OBS=0,8,103,183,0,4,2625,4586;STZ=0.001;STZ=0.118;CBZ=-0.007;CBZ=-0.600;QBZ=-0.006;QBZ=-0.504;MBR=0.082;MSR=0.058;MBZ=7.112;IOZ=0.230;IOH=-6.318;IOD=0.001;IOD=-0.000;AOZ=-57.028;AOZ=-50.710;ABZ=0.582;ABZ=5.684;BCS=-1107.375;FIC=-0.199;LQR=0.042;MQ10=0.000;MQ10=0.088;MQ20=0.182;MQ30=0.390;MENDEL=0;SVM=7.2820483;AN=928;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754433	rs150578204	G	A	0.0	PASS	NS=464;AF=0.010;AC=9;s50=1.00;LBS=10,1,1,1,47,115,2,1;OBS=129,127,0,0,1527,1814,2,0;STR=-0.024;STZ=-1.451;CBR=0.013;CBZ=0.762;QBR=-0.010;QBZ=-0.625;MBR=0.085;MSR=0.035;MBZ=5.076;IOR=0.086;IOZ=-4.623;IOH=0.000;IOD=-0.001;AOI=-68.485;AOZ=-63.862;ABE=0.602;ABZ=7.052;BCS=-947.173;FIC=-0.225;LQR=0.046;MQ0=0.000;MQ10=0.078;MQ20=0.171;MQ30=0.338;MENDEL=0;SVM=7.2822724;AN=928;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754458	rs142682604	G	T	0.0	PASS	NS=444;AF=0.011;AC=9;s50=0.95;LBS=0,10,0,12,25,134,9,25;OBS=0,1,2,2,2252,2267,158,129;STR=-0.025;STZ=-1.711;CBR=0.028;CBZ=1.946;QBR=-0.063;QBZ=-4.370;MBR=0.059;MSR=0.060;MBZ=4.099;IOR=0.169;IOZ=-4.940;IOH=0.002;IOD=0.000;AOI=-71.034;AOZ=-66.094;ABE=0.571;ABZ=5.190;BCS=-1100.481;FIC=-0.067;LQR=0.039;MQ0=0.000;MQ10=0.078;MQ20=0.173;MQ30=0.327;MENDEL=0;SVM=4.1017771;AN=888;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754503	rs3115859	G	A	0.0	PASS	NS=463;AF=0.709;AC=662;s50=0.99;LBS=250,417,1,7,216,291,0,4;OBS=7619,9592,0,11,2233,3208,0,4;STZ=-0.028;STZ=-4.185;CBZ=-0.012;CBZ=-1.847;QBZ=0.067;QBZ=10.068;MBR=0.215;MSR=-0.009;MBZ=32.284;IOZ=0.105;IOH=-11.305;IOD=0.000;IOD=-0.000;AOZ=-1767.175;AOZ=-1755.870;ABZ=0.442;ABZ=-14.617;BCS=-83421.749;FIC=-0.122;LQR=0.049;MQ10=0.000;MQ10=0.117;MQ20=0.225;MQ30=0.420;MENDEL=0;SVM=3.1609887;AN=926;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754510	.	G	A	0.0	PASS	NS=464;AF=0.003;AC=3;s50=1.00;LBS=19,10,22,4,302,215,19,9;OBS=65,76,2,1,6273,8679,4,3;STR=-0.008;STZ=-1.002;CBR=0.004;CBZ=0.496;QBR=-0.001;QBZ=-0.146;MBR=-0.105;MSR=0.027;MBZ=-12.917;IOR=0.110;IOZ=-9.003;IOH=0.000;IOD=-0.001;AOI=-26.459;AOZ=-17.456;ABE=0.418;ABZ=-2.870;BCS=-316.409;FIC=-0.042;LQR=0.035;MQ0=0.000;MQ10=0.070;MQ20=0.176;MQ30=0.345;MENDEL=0;SVM=5.5895005;AN=928;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754629	rs10454459	A	G	0.0	PASS	NS=345;AF=0.036;AC=26;s50=0.74;LBS=235,410,7,8,20,44,28,19;OBS=8397,6140,0,1,556,381,3,0;STZ=-0.008;STZ=-0.941;CBZ=0.009;CBZ=1.145;QBZ=0.026;QBZ=3.291;MBR=-0.013;MSR=-0.046;MBZ=-1.576;IOZ=0.049;IOH=-8.790;IOD=0.000;IOD=0.000;AOZ=-132.095;AOZ=-123.305;ABZ=0.690;ABZ=28.668;BCS=-3209.343;FIC=0.100;LQR=0.044;MQ10=0.000;MQ10=0.112;MQ20=0.217;MQ30=0.407;MENDEL=0;SVM=1.5880183;AN=690;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754642	.	T	G	0.0	PASS	NS=464;AF=0.002;AC=2;s50=1.00;LBS=49,21,67,14,46,23,555,312;OBS=9,2,8,4,25,29,6921,6688;STR=0.006;STZ=0.665;CBR=-0.004;CBZ=-0.486;QBR=-0.043;QBZ=-4.983;MBR=0.007;MSR=-0.053;MBZ=0.780;IOR=0.246;IOZ=-8.374;IOH=0.000;IOD=-0.002;AOI=-14.193;AOZ=-5.819;ABE=0.555;ABZ=1.576;BCS=-168.288;FIC=-0.042;LQR=0.064;MQ0=0.000;MQ10=0.120;MQ20=0.212;MQ30=0.416;MENDEL=0;SVM=5.3007767;AN=928;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754671	rs10454460	A	G	0.0	PASS	NS=430;AF=0.008;AC=7;s50=0.93;LBS=255,161,17,4,31,10,8,6;OBS=2365,4147,0,0,586,761,1,0;STZ=-0.056;STZ=-4.961;CBZ=0.018;CBZ=1.612;QBZ=0.163;QBZ=14.416;MBR=-0.552;MSR=0.054;MBZ=-48.960;IOZ=0.023;IOH=-6.558;IOD=0.000;IOD=-0.000;AOZ=-244.939;AOZ=-238.381;ABZ=0.620;ABZ=13.364;BCS=-5198.760;FIC=-4.466;LQR=0.055;MQ10=0.000;MQ10=0.155;MQ20=0.236;MQ30=0.460;MENDEL=0;SVM=1.0696263;AN=860;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754743	.	C	T	0.0	PASS	NS=464;AF=0.001;AC=1;s50=1.00;LBS=37,1,394,151,22,6,46,4;OBS=6,2,2286,3820,1,0,12,16;STR=-0.008;STZ=-0.628;CBR=-0.003;CBZ=-0.274;QBR=-0.027;QBZ=-2.122;MBR=0.015;MSR=0.047;MBZ=1.154;IOR=0.181;IOZ=-6.375;IOH=0.000;IOD=-0.001;AOI=-10.625;AOZ=-4.250;ABE=0.551;ABZ=1.075;BCS=-67.690;FIC=-0.137;LQR=0.088;MQ0=0.000;MQ10=0.101;MQ20=0.207;MQ30=0.421;MENDEL=0;SVM=5.4611269;AN=928;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754861	rs10454461	T	G	0.0	PASS	NS=445;AF=0.011;AC=10;s50=0.96;LBS=1,3,3,3,6,17,289,144;OBS=1,3,0,2,380,347,2013,1937;STZ=-0.009;STZ=-0.647;CBZ=0.016;CBZ=1.077;QBZ=0.090;QBZ=6.170;MBR=-0.324;MSR=-0.037;MBZ=-22.131;IOZ=0.173;IOH=-5.340;IOD=0.001;IOD=-0.000;AOZ=-160.774;AOZ=-155.435;ABZ=0.704;ABZ=19.465;BCS=-2368.828;FIC=-2.324;LQR=0.089;MQ10=0.000;MQ10=0.078;MQ20=0.158;MQ30=0.298;MENDEL=0;SVM=3.8631037;AN=890;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754928	.	C	T	0.0	PASS	NS=458;AF=0.001;AC=1;s50=0.99;LBS=2,6,240,198,3,12,7,7;OBS=2,20,2078,2376,1,3,16,22;STR=0.008;STZ=0.542;CBR=0.001;CBZ=0.077;QBR=0.004;QBZ=0.243;MBR=-0.067;MSR=-0.003;MBZ=-4.473;IOR=0.351;IOZ=-6.867;IOH=0.000;IOD=-0.006;AOI=-10.997;AOZ=-4.130;ABE=0.760;ABZ=8.008;BCS=-96.761;FIC=-2.201;LQR=0.091;MQ0=0.000;MQ10=0.180;MQ20=0.270;MQ30=0.513;MENDEL=0;SVM=2.0911931;AN=916;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754937	rs111491913	C	G	0.0	PASS	NS=464;AF=0.001;AC=1;s50=1.00;LBS=4,18,83,305,1,13,5,10;OBS=0,4,5435,7754,16,13,5,1;STZ=-0.013;STZ=-1.533;CBZ=-0.007;CBZ=-0.757;QBZ=-0.014;QBZ=-1.584;MBR=-0.026;MSR=-0.009;MBZ=-3.028;IOZ=0.113;IOH=-8.865;IOD=0.000;IOD=-0.001;AOZ=-12.004;AOZ=-3.138;ABZ=0.806;ABZ=10.399;BCS=7.165;FIC=-0.141;LQR=0.030;MQ10=0.000;MQ10=0.174;MQ20=0.262;MQ30=0.492;MENDEL=1;SVM=2.74777;AN=928;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754954	rs10454454	G	A	0.0	PASS	NS=457;AF=0.019;AC=18;s50=0.99;LBS=27,17,20,2,328,345,18,1;OBS=208,304,0,0,7264,9406,2,1;STR=0.010;STZ=1.320;CBR=0.008;CBZ=1.030;QBR=-0.039;QBZ=-5.158;MBR=-0.028;MSR=-0.014;MBZ=-3.650;IOR=0.035;IOZ=-9.166;IOH=0.000;IOD=-0.000;AOI=-73.739;AOZ=-64.573;ABE=0.773;ABZ=35.276;BCS=-1190.964;FIC=-0.580;LQR=0.040;MQ0=0.000;MQ10=0.184;MQ20=0.267;MQ30=0.489;MENDEL=1;SVM=3.4098509;AN=914;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754964	rs3131966	C	A,T	0.0	PASS	NS=460;AF=0.001,0.709;AC=1,657;s50=0.99;LBS=5,4,61,85,1,4,174,253;OBS=11,14,4344,5047,0,0,8861,10742;STR=-0.001;STZ=-0.099;CBR=-0.014;CBZ=-1.952;QBR=-0.003;QBZ=-0.438;MBR=0.040;MSR=-0.015;MBZ=5.587;IOR=0.994;IOZ=-4.660;IOH=0.078;IOD=-0.401;AOI=-1518.681;AOZ=-1514.021;ABE=0.207;ABZ=-8.956;BCS=-159192.411;FIC=0.995;LQR=0.022;MQ0=0.000;MQ10=0.255;MQ20=0.375;MQ30=0.695;MENDEL=8;SVM=0.37447536;AN=920;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754988	.	T	A	0.0	PASS	NS=459;AF=0.007;AC=7;s50=0.99;LBS=13,34,8,21,9,37,509,382;OBS=111,98,2,0,2,1,4868,4066;STR=0.004;STZ=0.401;CBR=-0.002;CBZ=-0.201;QBR=0.048;QBZ=4.635;MBR=-0.023;MSR=-0.010;MBZ=-2.182;IOR=0.074;IOZ=-7.892;IOH=0.000;IOD=-0.001;AOI=-38.181;AOZ=-30.289;ABE=0.786;ABZ=24.103;BCS=-391.216;FIC=-0.792;LQR=0.093;MQ0=0.000;MQ10=0.136;MQ20=0.220;MQ30=0.441;MENDEL=0;SVM=3.8413587;AN=918;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	754989	.	G	C	0.0	PASS	NS=462;AF=0.004;AC=4;s50=1.00;LBS=1,19,5,8,108,369,1,16;OBS=3,3,74,73,5564,4515,4,4;STR=0.012;STZ=1.181;CBR=-0.007;CBZ=-0.701;QBR=0.016;QBZ=1.632;MBR=0.048;MSR=-0.014;MBZ=4.820;IOR=0.172;IOZ=-8.232;IOH=0.000;IOD=-0.001;AOI=-27.910;AOZ=-19.678;ABE=0.506;ABZ=0.256;BCS=-566.083;FIC=-0.044;LQR=0.046;MQ0=0.000;MQ10=0.135;MQ20=0.218;MQ30=0.438;MENDEL=0;SVM=5.8495532;AN=924;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	755135	rs10454455	A	G	0.0	PASS	NS=439;AF=0.001;AC=1;s50=0.95;LBS=136,92,9,1,9,14,4,2;OBS=967,2141,0,0,289,475,1,0;STZ=-0.057;STZ=-3.558;CBZ=-0.057;CBZ=-3.550;QBZ=0.033;QBZ=2.057;MBR=-0.524;MSR=0.093;MBZ=-32.635;IOZ=0.039;IOH=-4.972;IOD=0.000;IOD=-0.000;AOZ=-183.112;AOZ=-178.139;ABZ=0.687;ABZ=16.866;BCS=-2033.693;FIC=-38.292;LQR=0.061;MQ10=0.000;MQ10=0.178;MQ20=0.276;MQ30=0.540;MENDEL=0;SVM=1.1659899;AN=878;EFF=TRANSCRIPT(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	755240	.	T	G	0.0	PASS	NS=462;AF=0.002;AC=2;s50=1.00;LBS=7,4,5,6,4,8,100,109;OBS=0,1,0,1,16,25,1262,2031;STR=-0.002;STZ=-0.127;CBR=0.014;CBZ=0.824;QBR=0.003;QBZ=0.197;MBR=0.020;MSR=0.045;MBZ=1.133;IOR=0.097;IOZ=-4.315;IOH=0.000;IOD=-0.000;AOI=-15.038;AOZ=-10.724;ABE=0.554;ABZ=1.457;BCS=-134.885;FIC=-0.110;LQR=0.062;MQ0=0.000;MQ10=0.121;MQ20=0.230;MQ30=0.443;MENDEL=0;SVM=6.0733348;AN=924;EFF=DOWNSTREAM(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	755274	rs78408995	C	T	0.0	PASS	NS=456;AF=0.044;AC=40;s50=0.98;LBS=2,0,97,63,1,2,27,22;OBS=0,1,1055,1658,0,0,289,307;STZ=-0.075;STZ=-4.323;CBZ=-0.009;CBZ=-0.543;QBZ=-0.077;QBZ=-4.449;MBR=0.104;MSR=-0.036;MBZ=5.986;IOZ=0.049;IOH=-4.415;IOD=0.000;IOD=-0.000;AOZ=-160.979;AOZ=-156.564;ABZ=0.563;ABZ=6.231;BCS=-2257.665;FIC=-0.155;LQR=0.059;MQ10=0.000;MQ10=0.181;MQ20=0.278;MQ30=0.503;MENDEL=0;SVM=3.4481711;AN=912;EFF=DOWNSTREAM(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	755334	rs115051782	C	A	0.0	PASS	NS=460;AF=0.001;AC=1;s50=0.99;LBS=3,1,46,46,1,2,7,2;OBS=10,7,1307,1820,0,1,1,0;STR=-0.025;STZ=-1.417;CBR=-0.014;CBZ=-0.804;QBR=-0.033;QBZ=-1.876;MBR=-0.027;MSR=-0.062;MBZ=-1.509;IOR=0.112;IOZ=-3.984;IOH=0.000;IOD=-0.001;AOI=-8.640;AOZ=-4.656;ABE=0.815;ABZ=6.451;BCS=-2.658;FIC=-0.168;LQR=0.030;MQ0=0.000;MQ10=0.086;MQ20=0.166;MQ30=0.350;MENDEL=0;SVM=3.4704134;AN=920;EFF=DOWNSTREAM(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	755348	.	T	A	0.0	PASS	NS=461;AF=0.001;AC=1;s50=0.99;LBS=3,5,0,4,1,4,37,116;OBS=10,12,0,9,0,3,1115,1584;STR=-0.008;STZ=-0.420;CBR=0.055;CBZ=2.878;QBR=-0.027;QBZ=-1.427;MBR=-0.019;MSR=0.002;MBZ=-0.971;IOR=0.426;IOZ=-3.968;IOH=0.000;IOD=-0.004;AOI=-8.498;AOZ=-4.530;ABE=0.839;ABZ=8.434;BCS=-34.684;FIC=-1.222;LQR=0.056;MQ0=0.000;MQ10=0.091;MQ20=0.194;MQ30=0.431;MENDEL=0;SVM=2.2524365;AN=922;EFF=DOWNSTREAM(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	755409	.	G	A	0.0	SVM	NS=405;AF=0.001;AC=1;s50=0.88;LBS=3,6,5,9,45,46,6,4;OBS=11,16,5,6,507,917,4,1;STR=-0.016;STZ=-0.596;CBR=-0.005;CBZ=-0.182;QBR=-0.047;QBZ=-1.788;MBR=0.022;MSR=-0.056;MBZ=0.845;IOR=0.664;IOZ=-2.833;IOH=0.013;IOD=0.002;AOI=-10.505;AOZ=-7.673;ABE=0.742;ABZ=6.243;BCS=-119.849;FIC=-2.665;LQR=0.064;MQ0=0.000;MQ10=0.218;MQ20=0.345;MQ30=0.564;MENDEL=1;SVM=-0.093108677;AN=810;EFF=DOWNSTREAM(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	755413	.	C	G	0.0	SVM	NS=378;AF=0.001;AC=1;s50=0.82;LBS=0,1,28,20,1,0,0,4;OBS=2,0,502,963,1,5,3,1;STR=0.019;STZ=0.714;CBR=0.003;CBZ=0.133;QBR=0.004;QBZ=0.167;MBR=0.022;MSR=-0.060;MBZ=0.833;IOR=0.443;IOZ=-2.746;IOH=0.000;IOD=-0.004;AOI=-4.006;AOZ=-1.261;ABE=0.913;ABZ=8.687;BCS=-22.754;FIC=0.497;LQR=0.032;MQ0=0.000;MQ10=0.220;MQ20=0.358;MQ30=0.572;MENDEL=1;SVM=-1.5361008;AN=756;EFF=DOWNSTREAM(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	755479	rs114136640	G	A	0.0	PASS	NS=442;AF=0.002;AC=2;s50=0.95;LBS=2,7,6,3,36,59,3,4;OBS=15,18,1,3,605,1005,1,2;STZ=-0.023;STZ=-0.952;CBZ=-0.021;CBZ=-0.850;QBZ=-0.006;QBZ=-0.235;MBR=0.075;MSR=-0.020;MBZ=3.040;IOZ=0.426;IOH=-3.026;IOD=0.005;IOD=0.001;AOZ=-13.967;AOZ=-10.941;ABZ=0.711;ABZ=5.489;BCS=-70.183;FIC=-1.450;LQR=0.060;MQ10=0.000;MQ10=0.219;MQ20=0.388;MQ30=0.756;MENDEL=0;SVM=0.47902874;AN=884;EFF=DOWNSTREAM(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	755483	rs114776907	C	G	0.0	PASS	NS=416;AF=0.002;AC=2;s50=0.90;LBS=0,1,16,29,0,1,0,4;OBS=1,0,587,1087,10,13,0,1;STR=-0.021;STZ=-0.883;CBR=0.011;CBZ=0.470;QBR=0.003;QBZ=0.134;MBR=0.034;MSR=0.071;MBZ=1.408;IOR=0.195;IOZ=-2.870;IOH=0.000;IOD=-0.001;AOI=-11.728;AOZ=-8.858;ABE=0.695;ABZ=3.542;BCS=-39.445;FIC=-0.726;LQR=0.026;MQ0=0.000;MQ10=0.204;MQ20=0.371;MQ30=0.701;MENDEL=0;SVM=0.63714111;AN=832;EFF=DOWNSTREAM(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)
1	755584	rs142717766	G	C	0.0	PASS	NS=455;AF=0.001;AC=1;s50=0.98;LBS=4,1,1,0,33,15,2,4;OBS=0,1,19,44,612,1425,0,0;STR=-0.002;STZ=-0.071;CBR=-0.037;CBZ=-1.680;QBR=0.031;QBZ=1.435;MBR=-0.063;MSR=0.008;MBZ=-2.885;IOR=0.092;IOZ=-3.141;IOH=0.000;IOD=-0.000;AOI=-26.213;AOZ=-23.072;ABE=0.767;ABZ=10.683;BCS=-104.150;FIC=-6.296;LQR=0.023;MQ0=0.000;MQ10=0.130;MQ20=0.261;MQ30=0.456;MENDEL=0;SVM=2.9567992;AN=910;EFF=DOWNSTREAM(MODIFIER||||FAM87B|lincRNA|NON_CODING|ENST00000326734|),UPSTREAM(LOW||||RP11-206L10.10|lincRNA|NON_CODING|ENST00000435300|)