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Author: Steffen Moeller
Last-Update: 2018-05-04 18:33:03 +0200
Description: Fix build
--- a/Makefile
+++ b/Makefile
@@ -37,8 +37,8 @@ ifeq (YES, $(PROFILE))
CFLAGS += $(PROFILE_FLAGS)
endif
-OBJ = SeqIO.o MiscUtilities.o MemManager.o TextConverter.o r250.o DNACount.o HSP.o Timing.o BWT.o extratools.o soapio.o BWTAln.o Match.o PairMatch.o stdaln.o kstring.o
-.SUFFIX:
+OBJ = SeqIO.o MiscUtilities.o MemManager.o TextConverter.o r250.o DNACount.o HSP.o Timing.o BWT.o extratools.o soapio.o BWTAln.o Match.o PairMatch.o stdaln.o kstring.o soap.o
+
.SUFFIX: .c .o
.c.o:
@@ -70,3 +70,5 @@ kstring.o:kstring.h
clean:
rm -f *.o $(PROG)
+
+.PHONY: clean
--- a/Match.c
+++ b/Match.c
@@ -74,7 +74,8 @@
} \
}
-inline void PickupHit(ALNSEQ *alnSeq, const int rr,int *site, HITTABLE *hits, const unsigned int *pacRef, const unsigned int dnaLength, unsigned short *cigar){
+/*inline */
+void PickupHit(ALNSEQ *alnSeq, const int rr,int *site, HITTABLE *hits, const unsigned int *pacRef, const unsigned int dnaLength, unsigned short *cigar){
#ifdef DEBUG
// fprintf(stderr, "Pick up for output\n");
#endif
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