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Description: Fix spelling
Author: Andreas Tille <tille@debian.org>
Last-Update: 2018-07-05
--- a/soap.1
+++ b/soap.1
@@ -69,7 +69,7 @@ Totally allowed mismatches in one read,
Allow gap size in one read, [0]
.TP
.B -M INT
-Match mode for each read or the seed part of read, which shouldn't contain more than 2 mismaches, [4]
+Match mode for each read or the seed part of read, which shouldn't contain more than 2 mismatches, [4]
.RS
.TP
0: exact match only
@@ -88,7 +88,7 @@ SOAP2 output format contains following c
.PP
1. reads name / reads ID (if -t is available)
.P
-2. reads sequence (if read align to reverse strand, here is the reverse sequence of orignal read)
+2. reads sequence (if read align to reverse strand, here is the reverse sequence of original read)
.P
3. quality sequence (if input is fasta reads, the column will be all 'h', and the sequence is backward if reads mapping reverse )
.P
--- a/soap.c
+++ b/soap.c
@@ -119,7 +119,7 @@ static void Usage(void) {
fprintf(stdout, "\t-b <str> query b file\n");
fprintf(stdout, "\t-D <str> reference sequences indexing table, *.index format\n");
fprintf(stdout, "\t-o <str> output alignment file(txt)\n");
- fprintf(stdout, "\t-M <int> match mode for each read or the seed part of read, which shouldn't contain more than 2 mismaches, [4]\n"
+ fprintf(stdout, "\t-M <int> match mode for each read or the seed part of read, which shouldn't contain more than 2 mismatches, [4]\n"
"\t 0: exact match only\n"
"\t 1: 1 mismatch match only\n"
"\t 2: 2 mismatch match only\n"
--- a/soap.man
+++ b/soap.man
@@ -71,7 +71,7 @@ CCOOMMMMAANNDD AANNDD OOPPT
--gg IINNTT Allow gap size in one read, [0]
--MM IINNTT Match mode for each read or the seed part of read, which
- shouldn't contain more than 2 mismaches, [4]
+ shouldn't contain more than 2 mismatches, [4]
0: exact match only
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