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Subject: Fails to compile, usleep unknown
Description: code from upstream fails to compile.
An include is missing.
Mail has been sent upstream and question posted to
their google group but got no answer.
Forwarded: no
Author: Olivier Sallou <osallou@debian.org>
Last-Updated: 2013-08-05
--- a/sparsePregraph/pregraph_sparse.cpp
+++ b/sparsePregraph/pregraph_sparse.cpp
@@ -34,6 +34,7 @@
#include "seq_util.h"
#include "convert_soapdenovo.h"
+#include <unistd.h>
static int LOAD_GRAPH = 0, BUILD_DBG = 1, BUILD_EDGES = 1, BUILD_PREARCS = 1;
//static int run_mode=0;
--- a/sparsePregraph/inc/multi_threads.h
+++ b/sparsePregraph/inc/multi_threads.h
@@ -24,6 +24,8 @@
#define _MULTI_THREADS_H
#include "stdinc.h"
+#include <unistd.h>
+
typedef struct parameter
{
unsigned char threadID;
--- a/Makefile
+++ b/Makefile
@@ -8,7 +8,7 @@
SUBDIRS = sparsePregraph standardPregraph fusion
PROG= SOAPdenovo-63mer SOAPdenovo-127mer SOAPdenovo-fusion
-INCLUDES= -I./sparsePregraph/inc -I./standardPregraph/inc
+INCLUDES= -I./sparsePregraph/inc -I./standardPregraph/inc -I/usr/include/x86_64-linux-gnu
LIBPATH= -L./sparsePregraph/inc -L./standardPregraph/inc -L/lib64 -L/usr/lib64
LIBS= -pthread -lz -lm
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