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DEFINE =
CXX = g++
CXXFLAGS += -fomit-frame-pointer -O3 -ffast-math -funroll-loops
LFLAGS = -lz
all: soapsnp
.PHONY: all
objects: call_genotype.o chromosome.o matrix.o normal_dis.o prior.o rank_sum.o main.o
$(objects): %.o: soap_snp.h makefile
soapsnp: call_genotype.o chromosome.o matrix.o normal_dis.o prior.o rank_sum.o main.o makefile
$(CXX) $(CFLAGS) $(CXXFLAGS) call_genotype.o chromosome.o matrix.o normal_dis.o prior.o rank_sum.o main.o -o soapsnp $(LFLAGS) $(LDFLAGS)
.PHONY: clean
clean:
rm -f *.o soapsnp
|
