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from setuptools import Extension
from distutils.core import setup
import sys
def get_extensions():
if "clean" in sys.argv:
return []
from Cython.Build import cythonize
extensions = [
Extension(
"sorted_nearest.src.sorted_nearest",
["sorted_nearest/src/sorted_nearest.pyx"],
),
Extension(
"sorted_nearest.src.max_disjoint_intervals",
["sorted_nearest/src/max_disjoint_intervals.pyx"],
),
Extension(
"sorted_nearest.src.k_nearest",
["sorted_nearest/src/k_nearest.pyx"],
),
Extension(
"sorted_nearest.src.k_nearest_ties",
["sorted_nearest/src/k_nearest_ties.pyx"],
),
Extension(
"sorted_nearest.src.clusters",
["sorted_nearest/src/clusters.pyx"],
),
Extension(
"sorted_nearest.src.annotate_clusters",
["sorted_nearest/src/annotate_clusters.pyx"],
),
Extension(
"sorted_nearest.src.cluster_by",
["sorted_nearest/src/cluster_by.pyx"],
),
Extension(
"sorted_nearest.src.merge_by",
["sorted_nearest/src/merge_by.pyx"],
),
Extension(
"sorted_nearest.src.introns",
["sorted_nearest/src/introns.pyx"],
),
Extension(
"sorted_nearest.src.windows",
["sorted_nearest/src/windows.pyx"],
),
Extension(
"sorted_nearest.src.tiles",
["sorted_nearest/src/tiles.pyx"],
),
]
return cythonize(extensions, language_level=3)
setup(ext_modules=get_extensions())
|
