File: performance.rst

package info (click to toggle)
sortedcontainers 2.4.0-2
  • links: PTS, VCS
  • area: main
  • in suites: bookworm, forky, sid, trixie
  • size: 11,136 kB
  • sloc: python: 6,613; sh: 60; makefile: 18
file content (586 lines) | stat: -rw-r--r-- 17,700 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
Performance Comparison
======================

Measuring performance is a difficult task. All the benchmarks on this page are
synthetic in the sense that they test one function repeatedly. Measurements in
live systems are much harder to produce reliably. So take the following data
with a grain of salt. That being said, a stated feature of :doc:`Sorted
Containers<index>` is performance so we would be remiss not to produce this
page with comparisons.

The source for all benchmarks can be found under the "tests" directory in the
files prefixed "benchmark." Measurements are made from the min, max, and median
of 5 repetitions. In the graphs below, the line follows the median at each
point. Note that the axes are log-log so properly reading two different lines
would describe one metric as "X times" faster rather than "X seconds"
faster. In all graphs, lower is better. Measurements are made by powers of ten:
100 through 10,000,000.

Measurements up to ten billion elements have been successfully tested and
benchmarked. Read :doc:`performance-scale` for details. Only a couple
implementations (including :doc:`Sorted Containers<index>`) are capable of
handling so many elements. The major limiting factor at that size is
memory. Consider the simple case of storing CPython's integers in a
:doc:`sortedlist`. Each integer object requires ~24 bytes so one hundred
million elements will require about three gigabytes of memory. If the
implementation adds significant overhead then most systems will run out of
memory. For all datasets which may be kept in memory, :doc:`Sorted
Containers<index>` is an excellent choice.

A good effort has been made to find competing implementations. Seven in total
were found with various list, set, and dict implementations.

1. *blist* -- Provides list, dict, and set containers based on the blist
   data-type. Uses a `B-Tree`_ data structure. Implemented in Python and C. BSD
   License. Last updated March, 2014. `blist on PyPI`_

2. *bintrees* -- Provides several tree-based implementations for dict and set
   containers.  Fastest were AVL-Tree and Red-Black-Tree data
   structures.. Extends the conventional API to provide set operations for the
   dict type. Now deprecated in favor of :doc:`Sorted Containers<index>`
   Implemented in C. MIT License. Last updated April, 2017.  `bintrees on
   PyPI`_

3. *sortedmap* -- Provides a fast, C++ implementation for dict data types. Uses
   the C++ standard library `std::map` data structure which is usually a
   red-black tree. Last updated February, 2016. `sortedmap on PyPI`_

4. *banyan* -- Provides a fast, C++ implementation for dict and set data
   types. Offers some features also found in sortedcontainers like accessing
   the n-th item in a set or dict. Uses sources from the `tree implementation`_
   in GNU libstdc++. GPLv3 License. Last updated April, 2013. `banyan on PyPI`_

5. *treap* -- Uses Cython for improved performance and provides a dict
   container. Apache V2 License. Last updated June, 2017. `treap on PyPI`_

6. *skiplistcollections* -- Pure-Python implementation based on skip-lists
   providing a limited API for dict and set types. MIT License. Last updated
   January, 2014. `skiplistcollections on PyPI`_

7. *sortedcollection* -- Pure-Python implementation of sorted list based solely
   on a list.  Feature-poor and inefficient for writes but included because it
   is written by Raymond Hettinger and linked from the official Python
   docs. MIT License. Last updated April, 2011. `sortedcollection recipe`_

Several alternative implementations were omitted for reasons documented below:

A. *rbtree* -- C-implementation that only supports Python 2. Provides a fast,
   C-implementation for dict and set data types. GPLv3 License. Last updated
   March, 2012. `rbtree on PyPI`_

B. *ruamel.ordereddict.sorteddict* -- C-implementation that only supports
   Python 2. Performance was measured in correspondence with the module
   author. Performance was generally very good except for ``__delitem__``. At
   scale, deleting entries became exceedingly slow. MIT License. Last updated
   July, 2017. `ruamel.ordereddict on PyPI`_

C. *pyskiplist* -- Pure-Python skip-list based implementation supporting a
   sorted-list-like interface. Now deprecated in favor of :doc:`Sorted
   Containers<index>`. MIT License. Last updated July, 2015. `pyskiplist on
   PyPI`_

D. *sorteddict* -- Pure-Python lazily-computed sorted dict implementation.  Now
   deprecated in favor of :doc:`Sorted Containers<index>`. GPLv3 License. Last
   updated September, 2007. `sorteddict on PyPI`_

E. *rbtree from NewCenturyComputers* -- Pure-Python tree-based
   implementation. Not sure when this was last updated.  Unlikely to be
   fast. Unknown license. Unknown last update. `rbtree from
   NewCenturyComputers`_

F. *python-avl-tree from GitHub user pgrafov* -- Pure-Python tree-based
   implementation. Unlikely to be fast. MIT License. Last updated
   October, 2010. `python-avl-tree from GitHub user pgrafov`_

G. *pyavl* -- C-implementation for AVL tree-based dict and set
   containers. Claims to be fast. Lacking documentation and failed to
   build. Public Domain License. Last updated December, 2008. `pyavl on PyPI`_

H. *skiplist* -- C-implementation of sorted list based on skip-list data
   structure. Only supports Python 2. Zlib/libpng License. Last updated
   Septemeber, 2013. `skiplist from Bitbucket user mojaves`_

The most similar module to :doc:`Sorted Containers<index>` is
skiplistcollections given that each is implemented in Python. But as is
displayed below, Sorted Containers is several times faster and provides a
richer API. Often the pure-Python implementation in Sorted Containers is faster
even than the C-implementation counterparts. Where it lacks, performance is
generally on the same magnitude.

Because :doc:`Sorted Containers<index>` is implemented in pure-Python, its
performance depends directly on the Python runtime. A :doc:`runtime performance
comparison<performance-runtime>` is also included with data from popular
runtimes.

:doc:`Sorted Containers<index>` uses a segmented-list data structure similar to
a B-tree limited to two levels of nodes. As part of the implementation, a load
factor is used to determine how many values should be stored in each node. This
can have a significant impact on performance and a :doc:`load factor
performance comparison<performance-load>` is also provided.

Though these benchmarks exercise only one API repeatedly, an effort has also
been made to simulate real-world workloads. The :doc:`simulated workload
performance comparison<performance-workload>` contains examples with
comparisons to other implementations, load factors, and runtimes.

Some final notes about the graphs below. Missing data indicates the benchmark
either took too long or failed. The set operations with tiny, small, medium,
and large variations indicate the size of the container involved in the
right-hand-side of the operation: tiny is exactly 10 elements; small is 10% of
the size of the left-hand-side; medium is 50%; and large is 100%. :doc:`Sorted
Containers<index>` uses a different algorithm based on the size of the
right-hand-side of the operation for a dramatic improvement in performance.

The legends of the graphs below correlate the underlying data structure used
the Python project. The correlation is as follows:

.. currentmodule:: sortedcontainers

======================  ==================================
Data Structure          Project
======================  ==================================
:class:`SortedList`     :doc:`Sorted Containers<index>`
:class:`SortedKeyList`  :doc:`Sorted Containers<index>`
B-Tree                  `blist on PyPI`_
List                    `sortedcollection recipe`_
AVL-Tree                `bintrees on PyPI`_
RB-Tree                 `banyan on PyPI`_
Skip-List               `skiplistcollections on PyPI`_
std::map                `sortedmap on PyPI`_
Treap                   `treap on PyPI`_
======================  ==================================

.. _`B-Tree`: https://en.wikipedia.org/wiki/B-tree
.. _`blist on PyPI`: https://pypi.org/project/blist/
.. _`bintrees on PyPI`: https://pypi.org/project/bintrees/
.. _`sortedmap on PyPI`: https://pypi.org/project/sortedmap/
.. _`sorteddict on PyPI`: https://pypi.org/project/sorteddict/
.. _`pyskiplist on PyPI`: https://pypi.org/project/pyskiplist/
.. _`banyan on PyPI`: https://pypi.org/project/Banyan/
.. _`treap on PyPI`: https://pypi.org/project/treap/
.. _`skiplistcollections on PyPI`: https://pypi.org/project/skiplistcollections/
.. _`sortedcollection recipe`: http://code.activestate.com/recipes/577197-sortedcollection/
.. _`rbtree on PyPI`: https://pypi.org/project/rbtree/
.. _`ruamel.ordereddict on PyPI`: https://pypi.org/project/ruamel.ordereddict/
.. _`rbtree from NewCenturyComputers`: http://newcenturycomputers.net/projects/rbtree.html
.. _`python-avl-tree from GitHub user pgrafov`: https://github.com/pgrafov/python-avl-tree
.. _`pyavl on PyPI`: https://pypi.org/project/pyavl/
.. _`skiplist from Bitbucket user mojaves`: https://bitbucket.org/mojaves/pyskiplist/
.. _`tree implementation`: https://gcc.gnu.org/onlinedocs/libstdc%2B%2B/ext/pb_ds/tree_based_containers.html

Sorted List
-----------

Graphs comparing :doc:`sortedlist` performance.

__init__
........

Initializing with a list of random numbers using :func:`SortedList.__init__`.

.. image:: _static/SortedList-init.png

add
...

Randomly adding values using :func:`SortedList.add`.

.. image:: _static/SortedList-add.png

contains
........

Randomly testing membership using :func:`SortedList.__contains__`.

.. image:: _static/SortedList-contains.png

count
.....

Counting objects at random using :func:`SortedList.count`.

.. image:: _static/SortedList-count.png

__delitem__
...........

Deleting objects at random using :func:`SortedList.__delitem__`.

.. image:: _static/SortedList-delitem.png

__getitem__
...........

Retrieving objects by index using :func:`SortedList.__getitem__`.

.. image:: _static/SortedList-getitem.png

index
.....

Finding the index of an object using :func:`SortedList.index`.

.. image:: _static/SortedList-index.png

iter
....

Iterating a SortedList using :func:`SortedList.__iter__`.

.. image:: _static/SortedList-iter.png

pop
...

Removing the last object using :func:`SortedList.pop`.

.. image:: _static/SortedList-pop.png

remove
......

Remove an object at random using :func:`SortedList.remove`.

.. image:: _static/SortedList-remove.png

update_large
............

Updating a SortedList with a large iterable using :func:`SortedList.update`.

.. image:: _static/SortedList-update_large.png

update_small
............

Updating a SortedList with a small iterable using :func:`SortedList.update`.

.. image:: _static/SortedList-update_small.png

Sorted Dict
-----------

Graphs comparing :doc:`sorteddict` performance.

__init__
........

Initializing with a list of pairs of random numbers using
:func:`SortedDict.__init__`.

.. image:: _static/SortedDict-init.png

__contains__
............

Given a key at random, test whether the key is in the dictionary using
:func:`SortedDict.__contains__`.

.. image:: _static/SortedDict-contains.png

__getitem__
...........

Given a key at random, retrieve the value using :func:`SortedDict.__getitem__`.

.. image:: _static/SortedDict-getitem.png

__setitem__
...........

Given a key at random, set the value using :func:`SortedDict.__setitem__`.

.. image:: _static/SortedDict-setitem.png

__delitem__
...........

Given a key at random, delete the value using :func:`SortedDict.__delitem__`.

.. image:: _static/SortedDict-delitem.png

iter
....

Iterate the keys of a SortedDict using :func:`SortedDict.__iter__`.

.. image:: _static/SortedDict-iter.png

setitem_existing
................

Given an existing key at random, set the value using
:func:`SortedDict.__setitem__`.

.. image:: _static/SortedDict-setitem_existing.png

Sorted Set
----------

Graphs comparing :doc:`sortedset` performance.

__init__
........

Initializing with a list of random numbers using :func:`SortedSet.__init__`.

.. image:: _static/SortedSet-init.png

add
...

Randomly add values using :func:`SortedSet.add`.

.. image:: _static/SortedSet-add.png

contains
........

Randomly test membership using :func:`SortedSet.__contains__`.

.. image:: _static/SortedSet-contains.png

difference_large
................

Set difference using :func:`SortedSet.difference`.

.. image:: _static/SortedSet-difference_large.png

difference_medium
.................

Set difference using :func:`SortedSet.difference`.

.. image:: _static/SortedSet-difference_medium.png

difference_small
................

Set difference using :func:`SortedSet.difference`.

.. image:: _static/SortedSet-difference_small.png

difference_tiny
...............

Set difference using :func:`SortedSet.difference`.

.. image:: _static/SortedSet-difference_tiny.png

difference_update_large
.......................

Set difference using :func:`SortedSet.difference_update`.

.. image:: _static/SortedSet-difference_update_large.png

difference_update_medium
........................

Set difference using :func:`SortedSet.difference_update`.

.. image:: _static/SortedSet-difference_update_medium.png

difference_update_small
.......................

Set difference using :func:`SortedSet.difference_update`.

.. image:: _static/SortedSet-difference_update_small.png

difference_update_tiny
......................

Set difference using :func:`SortedSet.difference_update`.

.. image:: _static/SortedSet-difference_update_tiny.png

intersection_large
..................

Set intersection using :func:`SortedSet.intersection`.

.. image:: _static/SortedSet-intersection_large.png

intersection_medium
...................

Set intersection using :func:`SortedSet.intersection`.

.. image:: _static/SortedSet-intersection_medium.png

intersection_small
..................

Set intersection using :func:`SortedSet.intersection`.

.. image:: _static/SortedSet-intersection_small.png

intersection_tiny
.................

Set intersection using :func:`SortedSet.intersection`.

.. image:: _static/SortedSet-intersection_tiny.png

intersection_update_large
.........................

Set intersection using :func:`SortedSet.intersection_update`.

.. image:: _static/SortedSet-intersection_update_large.png

intersection_update_medium
..........................

Set intersection using :func:`SortedSet.intersection_update`.

.. image:: _static/SortedSet-intersection_update_medium.png

intersection_update_small
.........................

Set intersection using :func:`SortedSet.intersection_update`.

.. image:: _static/SortedSet-intersection_update_small.png

intersection_update_tiny
........................

Set intersection using :func:`SortedSet.intersection_update`.

.. image:: _static/SortedSet-intersection_update_tiny.png

iter
....

Iterating a set using :func:`SortedSet.__iter__`.

.. image:: _static/SortedSet-iter.png

pop
...

Remove the last item in a set using :func:`SortedSet.pop`.

.. image:: _static/SortedSet-pop.png

remove
......

Remove an item at random using :func:`SortedSet.remove`.

.. image:: _static/SortedSet-remove.png

union_large
...........

Set union using :func:`SortedSet.union`.

.. image:: _static/SortedSet-union_large.png

union_medium
............

Set union using :func:`SortedSet.union`.

.. image:: _static/SortedSet-union_medium.png

union_small
...........

Set union using :func:`SortedSet.union`.

.. image:: _static/SortedSet-union_small.png

union_tiny
..........

Set union using :func:`SortedSet.union`.

.. image:: _static/SortedSet-union_tiny.png

update_large
............

Set update using :func:`SortedSet.update`.

.. image:: _static/SortedSet-update_large.png

update_medium
.............

Set update using :func:`SortedSet.update`.

.. image:: _static/SortedSet-update_medium.png

update_small
............

Set update using :func:`SortedSet.update`.

.. image:: _static/SortedSet-update_small.png

update_tiny
...........

Set update using :func:`SortedSet.update`.

.. image:: _static/SortedSet-update_tiny.png

symmetric_difference_large
..........................

Set symmetric-difference using :func:`SortedSet.symmetric_difference`.

.. image:: _static/SortedSet-symmetric_difference_large.png

symmetric_difference_medium
...........................

Set symmetric-difference using :func:`SortedSet.symmetric_difference`.

.. image:: _static/SortedSet-symmetric_difference_medium.png

symmetric_difference_small
..........................

Set symmetric-difference using :func:`SortedSet.symmetric_difference`.

.. image:: _static/SortedSet-symmetric_difference_small.png

symmetric_difference_tiny
.........................

Set symmetric-difference using :func:`SortedSet.symmetric_difference`.

.. image:: _static/SortedSet-symmetric_difference_tiny.png

symm_diff_update_large
......................

Set symmetric-difference using :func:`SortedSet.symmetric_difference_update`.

.. image:: _static/SortedSet-symmetric_difference_update_large.png

symm_diff_update_medium
.......................

Set symmetric-difference using :func:`SortedSet.symmetric_difference_update`.

.. image:: _static/SortedSet-symmetric_difference_update_medium.png

symm_diff_update_small
......................

Set symmetric-difference using :func:`SortedSet.symmetric_difference_update`.

.. image:: _static/SortedSet-symmetric_difference_update_small.png

symm_diff_update_tiny
.....................

Set symmetric-difference using :func:`SortedSet.symmetric_difference_update`.

.. image:: _static/SortedSet-symmetric_difference_update_tiny.png