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# sourmash tutorials and notebooks
## The first three tutorials!
These tutorials are command line tutorials that should work on Mac OS
X and Linux. They require about 5 GB of disk space and 5 GB of RAM.
* [The first sourmash tutorial - making signatures, comparing, and searching](tutorial-basic.md)
* [Using sourmash LCA to do taxonomic classification](tutorials-lca.md)
* [Analyzing the genomic and taxonomic composition of an environmental genome using GTDB and sample-specific MAGs with sourmash](tutorial-lemonade.md)
## Background and details
These next three tutorials are all notebooks that you can view, run
yourself, or run interactively online via the
[binder](https://mybinder.org) service.
* [An introduction to k-mers for genome comparison and analysis.](kmers-and-minhash.ipynb)
* [Some sourmash command line examples!](sourmash-examples.ipynb)
* [Working with private collections of signatures.](sourmash-collections.ipynb)
## Advanced tutorials and more information
For more information on analyzing sequencing data with sourmash, check out our [longer tutorial](tutorial-long.md).
Read [using `sourmash taxonomy` with the Life Identification Number (LIN) taxonomic framework](tutorial-lin-taxonomy.md) for some of our newer taxonomic features.
If you are a Python programmer, you might also be interested in our [API examples](api-example.md) as well as a short guide to [Using the `LCA_Database` API.](using-LCA-database-API.ipynb)
If you prefer R, we have [a short guide to using sourmash output with R](other-languages.md).
## Customizing matrix and dendrogram plots in Python
If you're interested in customizing the output of `sourmash plot`,
which produces comparison matrices and dendrograms, please see
[Building plots from `sourmash compare` output](plotting-compare.ipynb).
## Contents:
```{toctree}
:maxdepth: 2
tutorial-basic
tutorials-lca
kmers-and-minhash
sourmash-examples
sourmash-collections
tutorial-long
tutorial-lemonade
api-example
using-LCA-database-API
other-languages
```
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