1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33
|
#!/usr/bin/python3
import os
import shutil
import sys
import getopt
import glob
import spades_init
spades_init.init()
spades_home = spades_init.spades_home
import support
from process_cfg import *
def prepare_config(filename, K):
subst_dict = dict()
subst_dict["K"] = K
substitute_params(filename, subst_dict)
if len(sys.argv) != 2:
print ("Usage: " + sys.argv[0] + " K")
exit(0)
config = "configs/debruijn/config.info"
K = sys.argv[1]
print ("Changing to K = " + K)
prepare_config(config, K)
|