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spades 3.13.1+dfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: bullseye, sid
  • size: 22,172 kB
  • sloc: cpp: 136,213; ansic: 48,218; python: 16,809; perl: 4,252; sh: 2,115; java: 890; makefile: 507; pascal: 348; xml: 303

Folder: mts

d .. (parent)
d d rwxr-xr-x 154 binners
d d rwxr-xr-x 52 gzstream
d d rwxr-xr-x 4,096 kmc_api
d d rwxr-xr-x 50 profilers
d d rwxr-xr-x 4,096 scripts
- - rw-r--r-- 15,641 .cproject
- - rw-r--r-- 804 .project
- - rw-r--r-- 1,986 CMakeLists.txt
- - rw-r--r-- 4,734 Common.snake
- - rw-r--r-- 826 README
- - rw-r--r-- 2,689 Reassembly.snake
- - rw-r--r-- 7,053 Snakefile
- - rw-r--r-- 20,355 Stats.snake
- - rw-r--r-- 8,811 annotation.cpp
- - rw-r--r-- 4,249 annotation.hpp
- - rw-r--r-- 759 config.yaml
- - rw-r--r-- 9,691 contig_abundance.cpp
- - rw-r--r-- 5,194 contig_abundance.hpp
- - rw-r--r-- 2,873 contig_abundance_counter.cpp
- - rw-r--r-- 824 formats.hpp
- - rw-r--r-- 8,300 kmer_multiplicity_counter.cpp
- - rw-r--r-- 208 log.properties
- - rw-r--r-- 316 logger.hpp
- - rwxr-xr-x 3,974 mts.py
- - rwxr-xr-x 4,162 multirun.py
- - rw-r--r-- 5,586 prop_binning.cpp
- - rw-r--r-- 11,986 propagate.cpp
- - rw-r--r-- 1,080 propagate.hpp
- - rw-r--r-- 2,316 read_binning.cpp
- - rw-r--r-- 1,966 read_binning.hpp
- - rw-r--r-- 7,078 stats.cpp
- - rwxr-xr-x 6,761 test.py
- - rw-r--r-- 2,605 visualization.hpp