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spades 3.13.1+dfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: bullseye, sid
  • size: 22,172 kB
  • sloc: cpp: 136,213; ansic: 48,218; python: 16,809; perl: 4,252; sh: 2,115; java: 890; makefile: 507; pascal: 348; xml: 303

Folder: scripts

d .. (parent)
- - rw-r--r-- 257,766 Dataset_analysis.ipynb
- - rw-r--r-- 0 __init__.py
- - rwxr-xr-x 9,575 bhtsne.py
- - rwxr-xr-x 554 bin_profiles.py
- - rwxr-xr-x 622 choose_bins.py
- - rwxr-xr-x 2,780 choose_samples.py
- - rwxr-xr-x 595 clusters2csv.py
- - rwxr-xr-x 335 combine_contigs.py
- - rw-r--r-- 5,438 common.py
- - rwxr-xr-x 913 contig_name_filter.py
- - rw-r--r-- 1,711 converters.py
- - rwxr-xr-x 2,114 cut_fasta.py
- - rwxr-xr-x 1,832 filter_nucmer.py
- - rwxr-xr-x 9,560 gather_stats.py
- - rwxr-xr-x 4,842 gen_samples.py
- - rwxr-xr-x 5,529 multi_stats.py
- - rw-r--r-- 2,846 pca.R
- - rwxr-xr-x 7,284 run_tsne.py
- - rwxr-xr-x 1,282 split_bins.py
- - rwxr-xr-x 2,345 subsample.py
- - rwxr-xr-x 7,518 validate.pl