File: compare_runs.sh

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#!/bin/bash

############################################################################
# Copyright (c) 2015 Saint Petersburg State University
# Copyright (c) 2011-2014 Saint Petersburg Academic University
# All Rights Reserved
# See file LICENSE for details.
############################################################################


for file in $(ls $1/saves/*.sqn)
do
	echo $(basename $file)
	python3 compare_fasta.py $1/saves/$(basename $file)  $2/saves/$(basename $file)
done