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|
#!/usr/bin/make -f
# DH_VERBOSE := 1
include /usr/share/dpkg/default.mk
CPPFLAGS:=$(shell dpkg-buildflags --get CPPFLAGS)
CFLAGS:=$(shell dpkg-buildflags --get CFLAGS) $(CPPFLAGS)
CXXFLAGS:=$(shell dpkg-buildflags --get CXXFLAGS) $(CPPFLAGS)
LDFLAGS:=$(shell dpkg-buildflags --get LDFLAGS)
TMPDIR := $(CURDIR)/install_spades
LIBDIR := debian/$(DEB_SOURCE)/usr/lib/spades
mandir := $(CURDIR)/debian/man
debfolder := $(CURDIR)/debian
PREFIX:=/usr
BUILD_DIR:=$(CURDIR)/build_spades
DEB_CMAKE_EXTRA_FLAGS = -DSPADES_BOOST_ROOT=/usr/include
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
export LC_ALL = C
%:
dh $@ --with python3 --sourcedirectory=assembler/src --buildsystem=cmake
override_dh_clean:
dh_clean -X.orig
override_dh_auto_clean:
dh_auto_clean
rm -rf build_spades
rm -rf install_spades
rm -rf spades_test
find . -name "*.pyc" -delete
rm -rf $(debfolder)/man_src/*.html $(debfolder)/man_src/*.?
rm -rf $(mandir)
override_dh_auto_configure:
echo "Simply use spades_compile.sh in auto_build"
override_dh_auto_build:
cd assembler && PREFIX=$(TMPDIR) ./spades_compile.sh
# Use Debian-packaged yaml module
find $(TMPDIR) \
-type f \
-print0 \
-exec sed -i 's/pyyaml[2|3]/yaml/' {} +
override_dh_installman:
mkdir -p $(mandir)
asciidoctor -a docdate='' -b manpage $(debfolder)/man_src/*.adoc
cp $(debfolder)/man_src/*.? $(mandir)
dh_installman --
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
# Ugly hack to make files available for dh_aut_test and autopkgtest
mkdir -p $(CURDIR)/../share/
ln -s $(CURDIR)/install_spades/share/spades $(CURDIR)/../share/
ln -s /usr/bin/bwa $(CURDIR)/install_spades/bin/spades-bwa
$(TMPDIR)/bin/spades.py --test
$(TMPDIR)/bin/metaspades.py --test
$(TMPDIR)/bin/rnaspades.py --test
# Difficult to test truSPAdes before installing because bwa-spades
# is still not in the right place. Let's do this later in an
# autopkgtest.
# $(TMPDIR)/bin/truspades.py --test
# Cleunup symlinks
rm -rf $(CURDIR)/../share/
unlink $(CURDIR)/install_spades/bin/spades-bwa
endif
override_dh_auto_install:
echo "Nothing to install"
find $(CURDIR) -name *.pyc -delete
override_dh_install:
dh_install
mkdir -p $(LIBDIR)
mv debian/$(DEB_SOURCE)/usr/bin $(LIBDIR)
mkdir -p debian/$(DEB_SOURCE)/usr/bin
install debian/bin/spades debian/$(DEB_SOURCE)/usr/bin/
chmod +x debian/$(DEB_SOURCE)/usr/bin/spades
rm -f debian/$(DEB_SOURCE)/usr/share/spades/GPLv2.txt
rm -f debian/$(DEB_SOURCE)/usr/share/spades/README.md
rm -f debian/$(DEB_SOURCE)/usr/share/spades/LICENSE
ln -s ../../../share/spades/VERSION debian/$(DEB_SOURCE)/usr/lib/spades/bin/VERSION
override_dh_installdocs:
dh_installdocs
rm -f debian/$(DEB_SOURCE)/usr/share/spades/*.html
rm -f debian/$(DEB_SOURCE)/usr/share/spades/manual.md
override_dh_installchangelogs:
LANG="C" LANGUAGE="en_US:en" LC_ALL=C.UTF-8 lynx -dump assembler/changelog.html > changelog
dh_installchangelogs changelog
rm changelog
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