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spades 3.13.1+dfsg-2~bpo9+1
  • links: PTS, VCS
  • area: main
  • in suites: stretch-backports-sloppy
  • size: 22,052 kB
  • sloc: cpp: 136,213; ansic: 48,218; python: 16,809; perl: 4,252; sh: 2,115; java: 890; makefile: 507; pascal: 348; xml: 303

Folder: tools

d .. (parent)
d d rwxr-xr-x 147 IlluminaTech
d d rwxr-xr-x 35 blast-fasta
d d rwxr-xr-x 4,096 clean_contaminations
d d rwxr-xr-x 62 cleancontigs
d d rwxr-xr-x 4,096 contig_analysis
d d rwxr-xr-x 107 correctionEvaluator
d d rwxr-xr-x 4,096 correctionEvaluatorIon
d d rwxr-xr-x 32 coverage_based_rr
d d rwxr-xr-x 103 cuckoo_test
d d rwxr-xr-x 4,096 de_quality
d d rwxr-xr-x 36 divide_fastq
d d rwxr-xr-x 32 estimation
d d rwxr-xr-x 149 estimation_deprecated
d d rwxr-xr-x 32 fastafix
d d rwxr-xr-x 50 filter
d d rwxr-xr-x 4,096 kmersongenome
d d rwxr-xr-x 4,096 kmerstats
d d rwxr-xr-x 87 mail_sender
d d rwxr-xr-x 32 mapreads
d d rwxr-xr-x 96 maps_test
d d rwxr-xr-x 4,096 misc
d d rwxr-xr-x 126 nucmer_tool
d d rwxr-xr-x 31 prolonger
d d rwxr-xr-x 4,096 quake-correct
d d rwxr-xr-x 4,096 reads_utils
d d rwxr-xr-x 4,096 res_counter
d d rwxr-xr-x 103 sequenceDistanceMeter
d d rwxr-xr-x 61 spades_build
d d rwxr-xr-x 4,096 spades_download_stats
d d rwxr-xr-x 46 spades_pipeline
d d rwxr-xr-x 56 truseq
d d rwxr-xr-x 31 ukonnen
- - rwxr-xr-x 1,102 copy_ungzip.sh
- - rwxr-xr-x 5,008 dataset.py
- - rwxr-xr-x 220 dataset_check
- - rwxr-xr-x 468 dataset_hammer
- - rwxr-xr-x 221 dataset_md5
- - rwxr-xr-x 222 dataset_tar
- - rwxr-xr-x 627 dot_conv.sh
- - rw-r--r-- 2,945 fastaparser.py
- - rw-r--r-- 1,466 loc_pic.py
- - rwxr-xr-x 1,883 mauve_assembly_align.sh
- - rw-r--r-- 1,727 multi_hist.r
- - rwxr-xr-x 1,264 readsReformatter.hpp
- - rwxr-xr-x 1,272 run_velvet2.sh
- - rwxr-xr-x 2,027 run_velvet_unpaired.sh
- - rw-r--r-- 2,363 seq_filter.hpp
- - rw-r--r-- 4,587 seq_filter_stat.hpp
- - rw-r--r-- 403 spades_holybox_compile.sh
- - rwxr-xr-x 6,640 stash_cfg