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# Author: Óscar Nájera
# License: 3-clause BSD
r"""Testing the Jupyter notebook parser."""
import base64
import json
import os
import re
import shutil
import tempfile
import textwrap
from collections import defaultdict
from itertools import count
from pathlib import Path
import pytest
from sphinx.errors import ExtensionError
from sphinx_gallery.notebook import (
jupyter_notebook,
promote_jupyter_cell_magic,
python_to_jupyter_cli,
rst2md,
save_notebook,
)
from sphinx_gallery.py_source_parser import split_code_and_text_blocks
root = Path(__file__).parents[2]
def test_latex_conversion(gallery_conf):
"""Test Latex parsing from rst into Jupyter Markdown."""
double_inline_rst = r":math:`T<0` and :math:`U>0`"
double_inline_jmd = r"$T<0$ and $U>0$"
assert double_inline_jmd == rst2md(double_inline_rst, gallery_conf, "", {})
align_eq = r"""
.. math::
\mathcal{H} &= 0 \\
\mathcal{G} &= D"""
align_eq_jmd = r"""
\begin{align}\mathcal{H} &= 0 \\
\mathcal{G} &= D\end{align}"""
assert align_eq_jmd == rst2md(align_eq, gallery_conf, "", {})
def test_code_conversion():
"""Test `rst2md` results in ``` code format so Jupyter syntax highlighting works."""
rst = textwrap.dedent(
"""
Regular text
.. code-block::
# Bash code
More regular text
.. code-block:: cpp
//cpp code
//more cpp code
non-indented code blocks are not valid
.. code-block:: cpp
// not a real code block
"""
)
assert rst2md(rst, {}, "", {}) == textwrap.dedent(
"""
Regular text
```
# Bash code
```
More regular text
```cpp
//cpp code
//more cpp code
```
non-indented code blocks are not valid
.. code-block:: cpp
// not a real code block
"""
)
def test_convert(gallery_conf):
"""Test reST conversion to markdown."""
rst = """hello
.. contents::
:local:
This is :math:`some` math :math:`stuff`.
.. note::
Interpolation is a linear operation that can be performed also on
Raw and Epochs objects.
.. warning::
Go away
For more details on interpolation see the page :ref:`channel_interpolation`.
.. _foo: bar
.. image:: foobar
:alt: me
:whatever: you
:width: 200px
:class: img_class
`See more <https://en.wikipedia.org/wiki/Interpolation>`_.
"""
markdown = """hello
This is $some$ math $stuff$.
<div class="alert alert-info"><h4>Note</h4><p>Interpolation is a linear operation that can be performed also on
Raw and Epochs objects.</p></div>
<div class="alert alert-danger"><h4>Warning</h4><p>Go away</p></div>
For more details on interpolation see the page `channel_interpolation`.
<img src="file://foobar" alt="me" whatever="you" width="200px" class="img_class">
[See more](https://en.wikipedia.org/wiki/Interpolation).
""" # noqa
assert rst2md(rst, gallery_conf, "", {}) == markdown
def test_headings():
rst = textwrap.dedent(
"""\
=========
Heading 1
=========
Heading 2
=========
=============
Heading 1-2
=============
Heading 3
---------
=============
Not a Heading
-------------
Mismatch top and bottom
Not another heading
-=-=-=-=-=-=-=-=-=-
Multiple characters
-------
Bad heading but okay
-------------
Over and under mismatch, not rendered and warning raised by Sphinx
Another bad heading, but passable
^^^^^^^^^^^^^^^^^^^^^
Too short, warning raised but is rendered by Sphinx
A
*
BC
**
Some text
And then a heading
------------------
Not valid with no blank line above
=======================
Centered
=======================
------------------------
------------------------
Blank heading above.
{0}
====================
White space above
====================
"""
).format(" ")
# add whitespace afterward to avoid editors from automatically
# removing the whitespace on save
heading_level_counter = count(start=1)
heading_levels = defaultdict(lambda: next(heading_level_counter))
text = rst2md(rst, {}, "", heading_levels)
assert text.startswith("# Heading 1\n")
assert "\n## Heading 2\n" in text
assert "\n# Heading 1-2\n" in text
assert "\n### Heading 3\n" in text
assert "# Not a Heading" not in text
assert "# Not another Heading" not in text
assert "\n#### Bad heading but okay\n" in text
assert "\n##### Another bad heading, but passable\n" in text
assert "\n###### A\n" in text
assert "\n###### BC\n" in text
assert "# And then a heading\n" not in text
assert "\n# Centered\n" in text
assert "#\nBlank heading above." not in text
assert "# White space above\n" in text
def test_cell_magic_promotion():
markdown = textwrap.dedent(
"""\
# Should be rendered as text
``` bash
# This should be rendered as normal
```
``` bash
%%bash
# bash magic
```
```cpp
%%writefile out.cpp
// This c++ cell magic will write a file
// There should NOT be a text block above this
```
Interspersed text block
```javascript
%%javascript
// Should also be a code block
// There should NOT be a trailing text block after this
```
"""
)
work_notebook = {"cells": []}
promote_jupyter_cell_magic(work_notebook, markdown)
cells = work_notebook["cells"]
assert len(cells) == 5
assert cells[0]["cell_type"] == "markdown"
assert "``` bash" in cells[0]["source"][0]
assert cells[1]["cell_type"] == "code"
assert cells[1]["source"][0] == "%%bash\n# bash magic"
assert cells[2]["cell_type"] == "code"
assert cells[3]["cell_type"] == "markdown"
assert cells[3]["source"][0] == "Interspersed text block"
assert cells[4]["cell_type"] == "code"
@pytest.mark.parametrize(
"rst_path,md_path,prefix_enabled",
(
("../_static/image.png", "file://../_static/image.png", False),
("/_static/image.png", "file://_static/image.png", False),
("../_static/image.png", "https://example.com/_static/image.png", True),
("/_static/image.png", "https://example.com/_static/image.png", True),
("https://example.com/image.png", "https://example.com/image.png", False),
("https://example.com/image.png", "https://example.com/image.png", True),
),
ids=(
"rel_no_prefix",
"abs_no_prefix",
"rel_prefix",
"abs_prefix",
"url_no_prefix",
"url_prefix",
),
)
def test_notebook_images_prefix(gallery_conf, rst_path, md_path, prefix_enabled):
if prefix_enabled:
gallery_conf = gallery_conf.copy()
gallery_conf["notebook_images"] = "https://example.com/"
target_dir = os.path.join(gallery_conf["src_dir"], gallery_conf["gallery_dirs"])
rst = textwrap.dedent(
"""\
.. image:: {}
:alt: My Image
:width: 100px
:height: 200px
:class: image
"""
).format(rst_path)
markdown = rst2md(rst, gallery_conf, target_dir, {})
assert f'src="{md_path}"' in markdown
assert 'alt="My Image"' in markdown
assert 'width="100px"' in markdown
assert 'height="200px"' in markdown
assert 'class="image"' in markdown
def test_notebook_images_data_uri(gallery_conf):
gallery_conf = gallery_conf.copy()
gallery_conf["notebook_images"] = True
target_dir = os.path.join(gallery_conf["src_dir"], gallery_conf["gallery_dirs"])
test_image = os.path.join(
os.path.dirname(__file__), "tinybuild", "doc", "_static_nonstandard", "demo.png"
)
# For windows we need to copy this to tmpdir because if tmpdir and this
# file are on different drives there is no relpath between them
dest_dir = os.path.join(gallery_conf["src_dir"], "_static_nonstandard")
os.mkdir(dest_dir)
dest_image = os.path.join(dest_dir, "demo.png")
shutil.copyfile(test_image, dest_image)
# Make into "absolute" path from source directory
test_image_rel = os.path.relpath(dest_image, gallery_conf["src_dir"])
test_image_abs = "/" + test_image_rel.replace(os.sep, "/")
rst = textwrap.dedent(
"""\
.. image:: {}
:width: 100px
"""
).format(test_image_abs)
markdown = rst2md(rst, gallery_conf, target_dir, {})
assert "data" in markdown
assert 'src="data:image/png;base64,' in markdown
with open(test_image, "rb") as test_file:
data = base64.b64encode(test_file.read())
assert data.decode("ascii") in markdown
rst = textwrap.dedent(
"""\
.. image:: /this/image/is/missing.png
:width: 500px
"""
)
with pytest.raises(ExtensionError):
rst2md(rst, gallery_conf, target_dir, {})
def test_jupyter_notebook(gallery_conf):
"""Test that written ipython notebook file corresponds to python object."""
file_conf, blocks = split_code_and_text_blocks(root / "tutorials" / "plot_parse.py")
target_dir = "tutorials"
example_nb = jupyter_notebook(blocks, gallery_conf, target_dir)
with tempfile.NamedTemporaryFile("w", delete=False) as f:
save_notebook(example_nb, f.name)
try:
with open(f.name) as fname:
assert json.load(fname) == example_nb
finally:
os.remove(f.name)
# Test custom first cell text
test_text = "# testing\n%matplotlib notebook"
gallery_conf["first_notebook_cell"] = test_text
example_nb = jupyter_notebook(blocks, gallery_conf, target_dir)
assert example_nb.get("cells")[0]["source"][0] == test_text
# Test empty first cell text
test_text = None
gallery_conf["first_notebook_cell"] = test_text
example_nb = jupyter_notebook(blocks, gallery_conf, target_dir)
cell_src = example_nb.get("cells")[0]["source"][0]
assert re.match("^[\n]?# Alternating text and code", cell_src)
# Test custom last cell text
test_text = "# testing last cell"
gallery_conf["last_notebook_cell"] = test_text
example_nb = jupyter_notebook(blocks, gallery_conf, target_dir)
assert example_nb.get("cells")[-1]["source"][0] == test_text
# Test empty first cell text
test_text = None
gallery_conf["last_notebook_cell"] = test_text
example_nb = jupyter_notebook(blocks, gallery_conf, target_dir)
cell_src = example_nb.get("cells")[-1]["source"][0]
assert re.match("^Last text block.\n\nThat[\\\\]?'s all folks !", cell_src)
# Test Jupyter magic code blocks are promoted
gallery_conf["promote_jupyter_magic"] = True
example_nb = jupyter_notebook(blocks, gallery_conf, target_dir)
bash_block = example_nb.get("cells")[-2]
assert bash_block["cell_type"] == "code"
assert bash_block["source"][0] == "%%bash\n# This could be run!"
# Test text above Jupyter magic code blocks is intact
md_above_bash_block = example_nb.get("cells")[-3]
assert md_above_bash_block["cell_type"] == "markdown"
assert "Code blocks containing" in md_above_bash_block["source"][0]
###############################################################################
# Notebook shell utility
def test_with_empty_args():
"""User passes no args, should fail with `SystemExit`."""
with pytest.raises(SystemExit):
python_to_jupyter_cli([])
def test_missing_file():
"""User passes non existing file, should fail with `FileNotFoundError`."""
with pytest.raises(FileNotFoundError) as excinfo:
python_to_jupyter_cli(["nofile.py"])
excinfo.match(r"No such file or directory.+nofile\.py")
def test_file_is_generated(tmp_path):
"""Check notebook file created when user passes good python file."""
out = str(tmp_path / "plot_0_sin.py")
shutil.copyfile(root / "examples" / "plot_0_sin.py", out)
python_to_jupyter_cli([out])
assert os.path.isfile(f"{out[:-3]}.ipynb")
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