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|
#!/usr/bin/perl
#
# farms out jobs to a list of machines, finding available CPU
#
use strict;
use warnings;
use IO::Handle;
#---------------------------------------------------------
# check args
#---------------------------------------------------------
if ($#ARGV < 1 ) {
die "Usage: $0 nfilesperplot file1 [file2 file3 ... filen] \n also with a file called input \n";
}
#---------------------------------------------------------
# set farming method options are ssh, xgrid
#---------------------------------------------------------
#my $farmusing='ssh';
my $farmusing='none';
#my $farmusing='xgrid';
my $delay=3;
#---------------------------------------------------------
# set name and location of the supersphplot executable
#---------------------------------------------------------
my $home=`cd; pwd -P`;
chomp ($home);
my $exe="$home/splash/bin/ssplash -readpix chf";
my $pwd = `pwd`;
chomp($pwd);
#---------------------------------------------------------
# set other default options
#---------------------------------------------------------
my $inputfile='input';
my $pgplotfile='pgplot';
my $pgplotdev='none'; # doesn't matter
my $pgplotdir= $ENV{'PGPLOT_DIR'}; # get this from the environment
my $ldpath= $ENV{'LD_LIBRARY_PATH'}; # get this from the environment
my $run;
#---------------------------------------------------------
# get filenames and nfilesperplot from command line
#---------------------------------------------------------
my ($nfilesperplot,@files) = @ARGV;
#---------------------------------------------------------
# work out how many files should be sent as command line arguments to each run
#---------------------------------------------------------
if ($nfilesperplot < 1) { die "error: nfilesperplot must be > 0\n" };
my $nfiles=$#files + 1;
my $nruns=$nfiles/$nfilesperplot;
print "nfiles = $nfiles; nruns = $nruns\n";
#---------------------------------------------------------
# get generic input from input file
#---------------------------------------------------------
my @inputs = `cat $inputfile` or die "error: input file does not exist\n";
#open my $fh,'<',$inputfile or die "error: input file does not exist\n";
my $line;
my $nline = 0;
my $devline = 0;
foreach $line (@inputs) {
if ( $line =~ m|(/.+)\s| ) {
$pgplotdev = $1;
$devline = $nline;
}
$nline = $nline + 1;
}
#close $fh;
#---------------------------------------------------------
# work out what device we are writing to and therefore
# what the filenames should be
#---------------------------------------------------------
print "PGPLOT device = $pgplotdev $inputs[$devline]\n";
if ( $pgplotdev eq '/xw' or $pgplotdev eq '/aqt' ) {
die "must choose a non-interactive PGPLOT device\n";
}
#---------------------------------------------------------
# work out the filename extension from the device name
#---------------------------------------------------------
my ($ext) = $pgplotdev =~ m|/(.+)|;
#print "extension = $ext \n";
#---------------------------------------------------------
# farm out the jobs
#---------------------------------------------------------
my $filestart = 0;
my $fileend = $filestart + $nfilesperplot;
my $n = 0;
my $tempdir = 'temp';
system "mkdir $tempdir" || die("error creating temporary directory $tempdir");
for ($run=1;$run<=$nruns;$run++) {
my @inputstemp = @inputs;
my $num = sprintf("%04d",$run);
my $pgplotfile = "pgplot_$num.$ext";
#my $pgplotfile = "pgplot.$ext\_$run";
$inputstemp[$devline] = "$pgplotfile$pgplotdev\n";
print "------------ run $run : $pgplotfile ------------\n";
my @argsn=@files[$filestart..$fileend-1];
#---write the input file
open(INPUTF,"> $tempdir/input$run") || die("can't write temporary files");
foreach $line (@inputstemp) {
chomp($line);
print INPUTF "$line \n";
}
close(INPUTF);
#---write the executable script---
my $outfile = "$tempdir/run$run.output";
open(RUNSCR,"> $tempdir/run$run.csh") || die("can't write run script");
print RUNSCR "#!/bin/tcsh \n";
print RUNSCR "setenv PGPLOT_DIR $pgplotdir \n";
# print RUNSCR "source $home/.cshrc \n";
# print RUNSCR "setenv LD_LIBRARY_PATH $ldpath \n";
print RUNSCR "setenv F_UFMTENDIAN 'big;little:168' \n";
print RUNSCR "setenv PGPLOT_FONT $home/pgplot/grfont.dat_big \n";
print RUNSCR "cd $pwd \n";
print RUNSCR "$exe @argsn < $tempdir/input$run >& $outfile \n";
close(RUNSCR);
system "chmod a+x ./$tempdir/run$run.csh";
if ( -e "$outfile" ) { system "rm $outfile" };
my $commandline = "./$tempdir/run$run.csh";
if ( -s $pgplotfile ) {
print "skipping $pgplotfile which already exists \n";
} else {
if ($farmusing eq 'ssh') {
farmjob_ssh( $commandline, $n );
sleep $delay;
} elsif ($farmusing eq 'xgrid') {
farmjob_xgrid( $commandline );
} elsif ($farmusing eq 'none') {
print "no job farmed: using farming method \'none\' \n";
} else {
die "unknown farming method \n";
}
}
#---------------------------------
$filestart = $fileend;
$fileend = $filestart + $nfilesperplot;
}
exit;
#---------------------------------------------------------
# subroutine to farm job via Apple's Xgrid
#---------------------------------------------------------
sub farmjob_xgrid {
my $commandline=shift;
my $xgridauth = "-hostname cytosine.ex.ac.uk -auth Kerberos -gid 2";
my $jobid = `xgrid $xgridauth -job submit $commandline` || die "xgrid not found \n";
($jobid) = $jobid =~ m/jobIdentifier\s+=\s+(\d+);/; # \s matches spaces (+ = at least one) \d decimals
print "farmed via xgrid: job id = $jobid \n";
system "echo echo deleting... >> cleanxgrid; echo xgrid $xgridauth -job delete -id $jobid >> cleanxgrid";
system "echo echo getting results... >> getresultsxgrid; echo xgrid $xgridauth -job results -id $jobid >> getresultsxgrid";
sleep 1; # avoid multiple rapid-fire requests to xgrid server
}
#---------------------------------------------------------
# subroutine to farm jobs via simple ssh commands
# to a list of machines
#---------------------------------------------------------
sub farmjob_ssh {
my ($commandline,$n)=@_;
my (@machines) = `cat machinelist` or die "ERROR: for ssh version must list machines in file machinelist \n";
my $nmachines = $#machines;
if ( $nmachines < 1 ) {
die "ERROR: no machines specified in file machinelist \n";
}
my $pwd = `pwd`;
chomp($pwd);
my $njobsrun = 0;
my $loadavmax = 0.5;
my $bs = '\\';
# loop through all available machines looking for spare CPU
while ($njobsrun < 1) {
#--set which machine to try
if ($n > $nmachines) {
print "waiting for machines to become free \n";
sleep 30;
$n = 0;
};
my $machine = $machines[$n];
chomp($machine);
my $loadav = 0.0;
print "trying $machine: ";
#--get load average for this machine using uptime command
if ($loadavmax > 0.0) {
my $uptime=`ssh $machine uptime`;
($loadav) = $uptime =~ m/load ave.+:\s(\d+\.\d+)./;
print " load average last 1 minute = $loadav ";
}
#--set job running if not busy
if ( $loadav < $loadavmax ) {
print " ...OK \n";
$njobsrun = $njobsrun + 1;
# run the job
print "running $commandline on machine $machine at nice +19\n";
system "ssh -f $machine 'cd $pwd; nice +19 $commandline < /dev/null >& /dev/null &'";
} else {
print " ...too busy \n";
}
$n = $n + 1;
}
$_[1] = $n;
}
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