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Source: sprai
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Étienne Mollier <emollier@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13)
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/sprai
Vcs-Git: https://salsa.debian.org/med-team/sprai.git
Homepage: https://web.archive.org/web/20180316202959/http://zombie.cb.k.u-tokyo.ac.jp/sprai/
Rules-Requires-Root: no
Package: sprai
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
${perl:Depends},
ncbi-blast+,
time
Suggests: pbh5tools,
pbgenomicconsensus,
pbalign,
make
Description: single-pass sequencing read accuracy improver
Sprai is a tool to correct sequencing errors in single-pass reads for
de novo assembly. It is originally designed for correcting sequencing
errors in single-molecule DNA sequencing reads, especially in Continuous
Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is
not maximizing the accuracy of error-corrected reads. Instead, Sprai aims
at maximizing the continuity (i.e., N50 contig length) of assembled contigs
after error correction.
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