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/* sequence.h - Generic sequence functions */
#ifndef __SEQUENCE_H_
#define __SEQUENCE_H_
#include <stdio.h>
/* Types definitions */
typedef struct {
char *nam, *dsc, *str;
char **acc, **kwd;
size_t strlen;
int ver, gi;
int keycnt;
} sequence_t;
typedef enum {
SEQFMT_UNKWN, SEQFMT_SPROT, SEQFMT_EMBL, SEQFMT_GENBANK, SEQFMT_CODATA,
SEQFMT_NBRF, SEQFMT_GDE, SEQFMT_IG, SEQFMT_FASTA, SEQFMT_GCG, SEQFMT_RAW,
SEQFMT_NONE } seqfmt_t;
typedef enum {
SEQTYP_UNKWN, SEQTYP_NUC, SEQTYP_PRO, SEQTYP_NONE } seqtyp_t;
/* Functions prototypes */
sequence_t *sequence_new(void);
void sequence_free(sequence_t *);
sequence_t *sequence_parse(FILE *, seqfmt_t);
int sequence_check(FILE *, seqfmt_t);
int sequence_strict(sequence_t *);
void sequence_print(FILE *, sequence_t *, seqfmt_t);
seqfmt_t sequence_format(FILE *);
seqtyp_t sequence_type(char *);
#endif /* __SEQUENCE_H_ */
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