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|
#! /bin/sh
## Verbose mode
test "x$VERBOSE" = xx && set -x
## Sequence files location
srcdir=$srcdir/sequence
## Checks CODATA-like sequence
seqlist='codata.seq'
for f in $seqlist; do
(../src/squizz $srcdir/$f 2>&1 | grep -v CODATA) && exit 1
done
## Checks EMBL-like sequence
seqlist='embl.seq'
for f in $seqlist; do
(../src/squizz $srcdir/$f 2>&1 | grep -v EMBL) && exit 1
done
## Checks FASTA-like sequence
seqlist='fasta.seq'
for f in $seqlist; do
(../src/squizz $srcdir/$f 2>&1 | grep -v FASTA) && exit 1
done
## Checks GDE-like sequence
seqlist='gde.seq'
for f in $seqlist; do
(../src/squizz $srcdir/$f 2>&1 | grep -v GDE) && exit 1
done
## Checks GENBANK-like sequence
seqlist='genbank.seq genpept.seq refseqn.seq refseqp.seq'
for f in $seqlist; do
(../src/squizz $srcdir/$f 2>&1 | grep -v GENBANK) && exit 1
done
## Checks GCG-like sequence
seqlist='gcg.seq'
for f in $seqlist; do
(../src/squizz $srcdir/$f 2>&1 | grep -v GCG) && exit 1
done
## Checks IG-like sequence
seqlist='ig.seq'
for f in $seqlist; do
(../src/squizz $srcdir/$f 2>&1 | grep -v IG) && exit 1
done
## Checks NBRF-like sequence
seqlist='nbrf.seq'
for f in $seqlist; do
(../src/squizz $srcdir/$f 2>&1 | grep -v NBRF) && exit 1
done
## Checks RAW-like sequence
seqlist='raw.seq'
for f in $seqlist; do
(../src/squizz $srcdir/$f 2>&1 | grep -v RAW) && exit 1
done
## Checks SWISSPROT-like sequence
#seqlist='sprot.seq'
#for f in $seqlist; do
# (../src/squizz $srcdir/$f 2>&1 | grep -v SWISSPROT) && exit 1
#done
exit 0
|
