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<?xml version="1.0" ?>
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<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<title>seqfmt</title>
<meta http-equiv="content-type" content="text/html; charset=utf-8" />
</head>
<body style="background-color: white">
<!-- INDEX BEGIN -->
<div name="index">
<p><a name="__index__"></a></p>
<!--
<ul>
<li><a href="#name">NAME</a></li>
<li><a href="#description">DESCRIPTION</a></li>
<li><a href="#see_also">SEE ALSO</a></li>
<li><a href="#author">AUTHOR</a></li>
</ul>
-->
</div>
<!-- INDEX END -->
<p>This document illustrates some common formats used for sequences
representation.</p>
<dl>
<dt><strong><a name="embl" class="item"><strong>EMBL</strong></a></strong></dt>
<dd>
<pre>
ID MMVASPHOS standard; RNA; EST; 140 BP.
AC X97897;
DE M.musculus mRNA for protein homologous to
DE vasodilator-stimulated phosphoprotein
SQ Sequence 140 BP; 25 A; 58 C; 39 G; 17 T; 1 other;
ttctcccaga agctgactct atggngaccc cgagagagac tgagcagaac 60
ccccgcaccc ctgcacttcc aatcaggggc gccccgggag cactccccgt 120
ccgccctccg cgcagccatg 140
//</pre>
</dd>
<dt><strong><a name="fasta" class="item"><strong>FASTA</strong></a></strong></dt>
<dd>
<pre>
>MMVASPHOS
ttctcccagaagctgactctatggngaccccgagagagactgagcagaacctggagccag
ccccgcacccctgcacttccaatcaggggcgccccgggagcactccccgtggcgcgccgc
ccgccctccgcgcagccatg</pre>
</dd>
<dt><strong><a name="gcg" class="item"><strong>GCG</strong></a></strong></dt>
<dd>
<pre>
!!NA_SEQUENCE 1.0
(No documentation)
dna1.txt Length: 88 Nov 22, 2001 14:38 Type: N Check: 3818 ..</pre>
<pre>
1 TAGTCGTAGT CGGAGCGATG CTGACGATGA CGATGACGAT CGTAGCTGAT</pre>
<pre>
51 CGATCGAGCT GATGCTGATC GAGCTAGCTG ATCGATCG</pre>
</dd>
<dt><strong><a name="gde" class="item"><strong>GDE</strong></a></strong></dt>
<dd>
<pre>
#sample1
TTCAAGAGAAACAGCGGCCAAGGAAAAGACTCGGCATGATTGTCCATAGCTTACAAAGCG
#sample2
TTCAAGAGAAACAGCGGCTGGGGGAAAGACTCGTCCTGATTGCCTGTAGATGGTAAAGCG</pre>
</dd>
<dt><strong><a name="genbank" class="item"><strong>GENBANK</strong></a></strong></dt>
<dd>
<pre>
LOCUS HUMHBV1 130 bp DNA PRI 17-JUN-1993
DEFINITION Human DNA/endogenous Hepatitis B virus (HBV) DNA, left
host viral junction.
ACCESSION M15770
BASE COUNT 32 a 43 c 29 g 26 t
ORIGIN
1 agcgggcagt gcagctgctt ggacagcagg ggtgtttctt caacccaggc
61 ctcctgtcac aacaggccca ttcaattctg aacctgcaag ccaactccaa
121 cctcttttcc cagggggaac caaaaaccct
//</pre>
</dd>
<dt><strong><a name="ig" class="item"><strong>IG</strong></a></strong></dt>
<dd>
<pre>
; comment
U03518
AACCTGCGGAAGGATCATTACCGAGTGCGGGTCCTTTGGGCCCAACCTCCCATCCGTGTC
TATTGTACCCTGTTGCTTCGGCGGGCCCGCCGCTTGTCGGCCGCCGGGGGGGCGCCTCTG
TGAGTTGATTGAATGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGC1</pre>
</dd>
<dt><strong><a name="nbrf" class="item"><strong>NBRF</strong> (pir)</a></strong></dt>
<dd>
<pre>
>P1;CCHU
cytochrome c [validated] - human
MGDVEKGKKIFIMKCSQCHTVEKGGKHKTGPNLHGLFGRKTGQAPGYSYTAANKNKGIIW
GEDTLMEYLENPKKYIPGTKMIFVGIKKKEERADLIAYLKKATNE*</pre>
</dd>
<dt><strong><a name="codata" class="item"><strong>CODATA</strong></a></strong></dt>
<dd>
<pre>
ENTRY CCHU #type complete
TITLE cytochrome c [validated] - human
ACCESSIONS A31764; A05676; I55192; A00001
SUMMARY #length 105 #molecular-weight 11749 #checksum 3247
SEQUENCE
5 10 15 20 25 30
1 M G D V E K G K K I F I M K C S Q C H T V E K G G K H K T G
31 P N L H G L F G R K T G Q A P G Y S Y T A A N K N K G I I W
61 G E D T L M E Y L E N P K K Y I P G T K M I F V G I K K K E
91 E R A D L I A Y L K K A T N E
///</pre>
</dd>
<dt><strong><a name="raw" class="item"><strong>RAW</strong></a></strong></dt>
<dd>
<pre>
ttctcccagaagctgactctatggngaccccgagagagactgagcagaacctggagccag
ccccgcacccctgcacttccaatcaggggcgccccgggagcactccccgtggcgcgccgc
ccgccctccgcgcagccatg</pre>
<p><strong>Warning</strong>: This format cannot handle more than one sequence per file.</p>
</dd>
<dt><strong><a name="swissprot" class="item"><strong>SWISSPROT</strong></a></strong></dt>
<dd>
<pre>
ID 100K_RAT STANDARD; PRT; 149 AA.
AC Q62671;
DE 100 kDa protein (EC 6.3.2.-).
SQ SEQUENCE 149 AA; 17004 MW; D06484B8BC29112E CRC64;
MMSARGDFLN YALSLMRSHN DEHSDVLPVL DVCSLKHVAY VFQALIYWIK
PQLERKRTRE LLELGIDNED SEHENDDDTS QSATLNDKDD ESLPAETGQN
SITIRPPDDQ HLPTANTCIS RLYVPLYSSK QILKQKLLLA IKTKNFGFV
//</pre>
</dd>
</dl>
</body>
</html>
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