1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
|
/* parse.c - Sequence parsing helper functions */
#ifdef HAVE_CONFIG_H
# include <config.h>
#endif
#include <err.h>
#include <stdlib.h>
#include <string.h>
#include "extern/text.h"
#include "sequence.h"
#include "sequence/parse.h"
/* Null update ... */
/*ARGSUSED*/
void parse_nuladd(sequence_t *seq, char *str) {
if (str == NULL) { return; }
free(str);
return; }
/* Name update ... */
void parse_namadd(sequence_t *seq, char *str) {
if (str == NULL) { return; }
if (seq != NULL) {
seq->nam = text_strupd(seq->nam, str); }
free(str);
return; }
/* Accession number update */
void parse_accadd(sequence_t *seq, char *str) {
if (str == NULL) { return; }
if (seq != NULL) {
seq->acc = text_keyadd(seq->acc, str); }
free(str);
return; }
/* Version number update */
void parse_veradd(sequence_t *seq, int num) {
if (seq != NULL) {
seq->ver = num; }
return; }
/* NCBI GI number update */
void parse_giadd(sequence_t *seq, int num) {
if (seq != NULL) {
seq->gi = num; }
return; }
/* Description update ... */
void parse_dscadd1(sequence_t *seq, char *str) {
if (str == NULL) { return; }
if (seq != NULL) {
seq->dsc = text_strupds(seq->dsc, str); }
free(str);
return; }
void parse_dscadd2(sequence_t *seq, char *str) {
if (str == NULL) { return; }
if (seq != NULL) {
seq->dsc = text_strupd(seq->dsc, str); }
free(str);
return; }
/* Keywords update ... */
void parse_kwdadd(sequence_t *seq, char *str) {
if (str == NULL) { return; }
if (seq != NULL) {
if (seq->keycnt == 1) {
seq->kwd = text_keyupd(seq->kwd, str); }
else {
seq->kwd = text_keyadd(seq->kwd, str); }
seq->keycnt = 0; }
free(str);
return; }
void parse_kwdupd(sequence_t *seq, char *str) {
if (str == NULL) { return; }
if (seq != NULL) {
if (seq->keycnt == 1) {
seq->kwd = text_keyupd(seq->kwd, str); }
else {
seq->kwd = text_keyadd(seq->kwd, str); }
seq->keycnt = 1; }
free(str);
return; }
void parse_kwdadd2(sequence_t *seq, char *str) {
if (str == NULL) { return; }
if (seq != NULL) {
seq->kwd = text_keyadd(seq->kwd, str); }
free(str);
return; }
void parse_kwdupd2(sequence_t *seq, char *str) {
if (str == NULL) { return; }
if (seq != NULL) {
if (seq->kwd == NULL)
seq->kwd = text_keyadd(seq->kwd, str);
else
seq->kwd = text_keyupd(seq->kwd, str); }
free(str);
return; }
/* Sequence string update ... */
void parse_stradd(sequence_t *seq, char *str) {
char *p, *q;
if (str == NULL) { return; }
if (seq != NULL) {
size_t len = seq->strlen + strlen(str);
if ((seq->str = (char *)realloc(seq->str, len+1)) == NULL) {
err(EXIT_FAILURE, "memory"); }
p = str; q = seq->str + seq->strlen;
while (*p) { *q++ = *p++; }
*q = '\0';
seq->strlen = len; }
free(str);
return; }
|
