File: raw.sh

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squizz 0.99d%2Bdfsg-3
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#! /bin/sh

## Inits
sequence=$srcdir/sequence/raw.seq

## Check default RAW file reference
(../src/squizz -S -f raw $sequence 2>&1 | grep -v RAW) && exit 1

## Check sequence with gaps
sed 's/gggg/----/' $sequence >_tmpseq.seq
(../src/squizz -S -f raw _tmpseq.seq 2>&1 | grep -v RAW) && exit 1

## Cleanup
rm -f _tmpseq*.seq

exit 0