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# ===========================================================================
#
# PUBLIC DOMAIN NOTICE
# National Center for Biotechnology Information
#
# This software/database is a "United States Government Work" under the
# terms of the United States Copyright Act. It was written as part of
# the author's official duties as a United States Government employee and
# thus cannot be copyrighted. This software/database is freely available
# to the public for use. The National Library of Medicine and the U.S.
# Government have not placed any restriction on its use or reproduction.
#
# Although all reasonable efforts have been taken to ensure the accuracy
# and reliability of the software and data, the NLM and the U.S.
# Government do not and cannot warrant the performance or results that
# may be obtained by using this software or data. The NLM and the U.S.
# Government disclaim all warranties, express or implied, including
# warranties of performance, merchantability or fitness for any particular
# purpose.
#
# Please cite the author in any work or product based on this material.
#
# ===========================================================================
default: std
TOP ?= $(abspath ../..)
MODULE = tools/bam-loader
INT_TOOLS = \
samview
EXT_TOOLS = \
bam-load
ALL_TOOLS = \
$(INT_TOOLS) \
$(EXT_TOOLS)
include $(TOP)/build/Makefile.env
#-------------------------------------------------------------------------------
# outer targets
#
ifeq (win,$(OS))
all std:
@ echo "not building bam-load under Windows"
else
all std: makedirs
@ $(MAKE_CMD) $(TARGDIR)/$@-cmn
endif
$(ALL_TOOLS): makedirs
@ $(MAKE_CMD) $(BINDIR)/$@
.PHONY: all std $(ALL_TOOLS)
#-------------------------------------------------------------------------------
# clean
#
clean: stdclean
.PHONY: clean
#-------------------------------------------------------------------------------
# bam-load
#
BAMLOAD_SRC = \
bam-loader \
bam \
sam \
alignment-writer \
reference-writer \
sequence-writer \
loader-imp \
mem-bank \
low-match-count
BAMLOAD_OBJ = \
$(addsuffix .$(OBJX),$(BAMLOAD_SRC))
BAMLOAD_LIB = \
-lkapp \
-stk-version \
-lload \
-sncbi-wvdb \
-lm
$(BINDIR)/bam-load: $(BAMLOAD_OBJ)
$(LP) --exe --vers $(SRCDIR)/../../shared/toolkit.vers -o $@ $^ $(BAMLOAD_LIB)
#-------------------------------------------------------------------------------
# samview
#
SAMVIEW_SRC = \
bam \
sam \
samview
SAMVIEW_OBJ = \
$(addsuffix .$(OBJX),$(SAMVIEW_SRC))
SAMVIEW_LIB = \
-lkapp \
-stk-version \
-sncbi-vdb \
-lm
$(BINDIR)/samview: $(SAMVIEW_OBJ)
$(LP) --exe --vers $(SRCDIR)/../../shared/toolkit.vers -o $@ $^ $(SAMVIEW_LIB)
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