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# ===========================================================================
#
# PUBLIC DOMAIN NOTICE
# National Center for Biotechnology Information
#
# This software/database is a "United States Government Work" under the
# terms of the United States Copyright Act. It was written as part of
# the author's official duties as a United States Government employee and
# thus cannot be copyrighted. This software/database is freely available
# to the public for use. The National Library of Medicine and the U.S.
# Government have not placed any restriction on its use or reproduction.
#
# Although all reasonable efforts have been taken to ensure the accuracy
# and reliability of the software and data, the NLM and the U.S.
# Government do not and cannot warrant the performance or results that
# may be obtained by using this software or data. The NLM and the U.S.
# Government disclaim all warranties, express or implied, including
# warranties of performance, merchantability or fitness for any particular
# purpose.
#
# Please cite the author in any work or product based on this material.
#
# ===========================================================================
default: std
TOP ?= $(abspath ../..)
MODULE = tools/pacbio-load
INT_TOOLS = \
EXT_TOOLS = \
pacbio-load
ALL_TOOLS = \
$(INT_TOOLS) \
$(EXT_TOOLS)
include $(TOP)/build/Makefile.env
#-------------------------------------------------------------------------------
# where to find hdf5 libs
#
ifdef NCBI
ifeq (dbg,$(BUILD))
LIBHDF5_LPATH = $(NCBI)/hdf5/Debug/lib
else
LIBHDF5_LPATH = $(NCBI)/hdf5/Release/lib
endif
endif
#-------------------------------------------------------------------------------
# outer targets
#
ifeq (1,$(HAVE_HDF5))
all std: makedirs
@ $(MAKE_CMD) $(TARGDIR)/$@-cmn
$(ALL_TOOLS): makedirs
@ $(MAKE_CMD) $(BINDIR)/$@
else
all std: $(ALL_TOOLS)
$(ALL_TOOLS):
@ echo "NOTE - $(@F) cannot be built:" \
"It requires our internal library 'libkdf5'" \
"which requires 'libhdf5' and its development headers."
endif
.PHONY: all std $(ALL_TOOLS)
#-------------------------------------------------------------------------------
# clean
#
clean: stdclean
.PHONY: clean
#-------------------------------------------------------------------------------
# vdb-copy
# vdb copy tool
#
PACBIO_LOAD_SRC = \
pl-context \
pl-tools \
pl-zmw \
pl-basecalls_cmn \
pl-sequence \
pl-consensus \
pl-passes \
pl-metrics \
pl-regions \
pl-progress \
pacbio-load
PACBIO_LOAD_OBJ = \
$(addsuffix .$(OBJX),$(PACBIO_LOAD_SRC))
PACBIO_LOAD_LIB = \
-skapp \
-stk-version \
-skdf5 \
-sload \
-shdf5_serial \
-sncbi-wvdb \
-sm \
ifdef HDF5_LIBDIR
PACBIO_LOAD_LIB += $(addprefix -L,$(HDF5_LIBDIR))
endif
$(BINDIR)/pacbio-load: $(PACBIO_LOAD_OBJ)
$(LD) --exe --vers $(SRCDIR)/../../shared/toolkit.vers -o $@ $^ $(PACBIO_LOAD_LIB)
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