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# ===========================================================================
#
# PUBLIC DOMAIN NOTICE
# National Center for Biotechnology Information
#
# This software/database is a "United States Government Work" under the
# terms of the United States Copyright Act. It was written as part of
# the author's official duties as a United States Government employee and
# thus cannot be copyrighted. This software/database is freely available
# to the public for use. The National Library of Medicine and the U.S.
# Government have not placed any restriction on its use or reproduction.
#
# Although all reasonable efforts have been taken to ensure the accuracy
# and reliability of the software and data, the NLM and the U.S.
# Government do not and cannot warrant the performance or results that
# may be obtained by using this software or data. The NLM and the U.S.
# Government disclaim all warranties, express or implied, including
# warranties of performance, merchantability or fitness for any particular
# purpose.
#
# Please cite the author in any work or product based on this material.
#
# ===========================================================================
# determine shell environment
include $(TOP)/build/Makefile.shell
# load build configuration
include $(CONFIG_FILE)
# load platform-specific settings
include $(TOP)/build/Makefile.$(OS)
#-------------------------------------------------------------------------------
# install
#
# $TOOLS_TO_INSTALL
include $(TOP)/build/Makefile.tools
ifeq (1,$(HAVE_HDF5))
TOOLS_TO_INSTALL += pacbio-load
endif
#fake root for debugging
#uncomment this line and change the test for root ( see under install: ) to succeed:
#ROOT = ~/root
ROOT=$(CURDIR)/debian/sra-toolkit
EXE_TARGET = $(INST_BINDIR)
PROFILE_FILE = $(ROOT)/etc/profile.d/sra-tools
installexes:
@ echo "Installing executables to $(INST_BINDIR)/..."
@ mkdir -p $(INST_BINDIR)
@ $(MAKE) -s --no-print-directory -f $(TOP)/build/Makefile.install $(TOOLS_TO_INSTALL)
@ printf "Installing magic file..."
@ $(COPY) $(TOP)/tools/copycat/magic $(INST_BINDIR) && echo "done"
$(TOOLS_TO_INSTALL):
@ printf "Installing $@..."
@ # ignore missing tools
@ - ( test -f $(BINDIR)/$@$(EXEX) || ( echo "not found" && false ) ) && \
$(COPY) $(BINDIR)/$@$(EXEX) $(BINDIR)/$@$(VERSION_EXEX) $(BINDIR)/$@$(MAJVERS_EXEX) $(INST_BINDIR) && \
echo "done"
ifeq (linux, $(OS))
ifeq (0, $(shell id -u))
LINUX_ROOT = true
endif
endif
install: installexes
ifeq (true, $(LINUX_ROOT))
@ # install configuration file(s)
@ printf "Installing configuration files to $(ROOT)/etc/ncbi/..."
( mkdir -p $(ROOT)/etc/ncbi && \
cp -p $(TOP)/tools/vdb-copy/vdb-copy.kfg $(ROOT)/etc/ncbi ; \
if [ -f $(BINDIR)/ncbi/default.kfg ] ; then \
if [ -f $(ROOT)/etc/ncbi/default.kfg ] ; then \
mv -v $(ROOT)/etc/ncbi/default.kfg $(ROOT)/etc/ncbi/default.kfg.orig;\
fi; \
cp -p $(BINDIR)/ncbi/default.kfg $(ROOT)/etc/ncbi ; \
fi; \
if [ -f $(BINDIR)/ncbi/certs.kfg ] ; then \
if [ -f $(ROOT)/etc/ncbi/certs.kfg ] ; then \
mv -v $(ROOT)/etc/ncbi/certs.kfg $(ROOT)/etc/ncbi/certs.kfg.orig; \
fi; \
cp -p $(BINDIR)/ncbi/certs.kfg $(ROOT)/etc/ncbi ; \
fi ) && echo done
@ #
@ echo "Updating $(PROFILE_FILE).[c]sh"
@ printf \
"#version $(VERSION)\n"\
"if ! echo \$$PATH | /bin/grep -q $(EXE_TARGET)\n"\
"then export PATH=$(EXE_TARGET):\$$PATH\n"\
"fi" \
>$(PROFILE_FILE).sh && chmod 644 $(PROFILE_FILE).sh || true;
@ printf \
"#version $(VERSION)\n"\
"echo \$$PATH | /bin/grep -q $(EXE_TARGET)\n"\
"if ( \$$status ) setenv PATH $(EXE_TARGET):\$$PATH\n"\
>$(PROFILE_FILE).csh && chmod 644 $(PROFILE_FILE).csh || true;
@ #TODO: check version of the files above
else
@ # install configuration file(s)
@ printf "Installing configuration files to $(INST_BINDIR)/ncbi/..."
( mkdir -p $(INST_BINDIR)/ncbi && \
cp -p $(TOP)/tools/vdb-copy/vdb-copy.kfg $(INST_BINDIR)/ncbi/ ; \
if [ -f $(BINDIR)/ncbi/default.kfg ] ; then \
if [ -f $(INST_BINDIR)/ncbi/default.kfg ] ; then \
mv -v $(INST_BINDIR)/ncbi/default.kfg \
$(INST_BINDIR)/ncbi/default.kfg.orig; \
fi; \
cp -p $(BINDIR)/ncbi/default.kfg $(INST_BINDIR)/ncbi ; \
fi; \
if [ -f $(BINDIR)/ncbi/certs.kfg ] ; then \
if [ -f $(INST_BINDIR)/ncbi/certs.kfg ] ; then \
mv -v $(INST_BINDIR)/ncbi/certs.kfg \
$(INST_BINDIR)/ncbi/certs.kfg.orig; \
fi; \
cp -p $(BINDIR)/ncbi/certs.kfg $(INST_BINDIR)/ncbi ; \
fi ) && echo done
endif
#-------------------------------------------------------------------------------
# uninstall
#
TO_UNINSTALL = $(addsuffix *,$(addprefix $(INST_BINDIR)/,$(TOOLS_TO_INSTALL) magic))
ifneq (true, $(LINUX_ROOT))
TO_UNINSTALL += $(INST_BINDIR)/ncbi/certs.kfg $(INST_BINDIR)/ncbi/ncbi-vdb.kfg $(INST_BINDIR)/ncbi/default.kfg $(INST_BINDIR)/ncbi/vdb-copy.kfg
endif
TO_UNINSTALL_AS_ROOT = $(ROOT)/etc/ncbi/certs.kfg $(ROOT)/etc/ncbi/default.kfg $(ROOT)/etc/ncbi/vdb-copy.kfg $(PROFILE_FILE).sh $(PROFILE_FILE).csh
uninstall:
@ echo "Uninstalling sra-tools from $(INST_BINDIR)..."
rm -rf $(TO_UNINSTALL)
ifeq (true, $(LINUX_ROOT))
@ echo "Uninstalling $(TO_UNINSTALL_AS_ROOT) ..."
@ rm -rf $(TO_UNINSTALL_AS_ROOT)
endif
@ echo "done."
.PHONY: install installexes uninstall
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