1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
|
# ===========================================================================
#
# PUBLIC DOMAIN NOTICE
# National Center for Biotechnology Information
#
# This software/database is a "United States Government Work" under the
# terms of the United States Copyright Act. It was written as part of
# the author's official duties as a United States Government employee and
# thus cannot be copyrighted. This software/database is freely available
# to the public for use. The National Library of Medicine and the U.S.
# Government have not placed any restriction on its use or reproduction.
#
# Although all reasonable efforts have been taken to ensure the accuracy
# and reliability of the software and data, the NLM and the U.S.
# Government do not and cannot warrant the performance or results that
# may be obtained by using this software or data. The NLM and the U.S.
# Government disclaim all warranties, express or implied, including
# warranties of performance, merchantability or fitness for any particular
# purpose.
#
# Please cite the author in any work or product based on this material.
#
# ===========================================================================
default: std
TOP ?= $(abspath ../..)
MODULE = tools/sra-seq-count
INT_TOOLS = \
EXT_TOOLS = \
sra-seq-count
ALL_TOOLS = \
$(INT_TOOLS) \
$(EXT_TOOLS)
include $(TOP)/build/Makefile.env
#-------------------------------------------------------------------------------
# outer targets
#
all std: makedirs
@ $(MAKE_CMD) $(TARGDIR)/$@-cmn
$(ALL_TOOLS): makedirs
@ $(MAKE_CMD) $(BINDIR)/$@
.PHONY: all std $(ALL_TOOLS)
#-------------------------------------------------------------------------------
# clean
#
clean: stdclean
.PHONY: clean
#-------------------------------------------------------------------------------
# Common dumper definitions
#
TOOL_LIBS = \
-skapp \
-stk-version \
-sncbi-ngs-c++ \
-sngs-c++ \
-sncbi-vdb
#-------------------------------------------------------------------------------
# fastq-dump
#
TOOL_SRC = \
main_fkt \
sra-seq-count
INCDIRS += -I $(TOP)/ngs/ngs-c++
TOOL_OBJ = \
$(addsuffix .$(OBJX),$(TOOL_SRC))
$(BINDIR)/sra-seq-count: $(TOOL_OBJ)
$(LP) --exe --vers $(SRCDIR)/../../shared/toolkit.vers -o $@ $^ $(TOOL_LIBS)
|
