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/*===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/
#ifndef _h_sra_sort_csra_tbl_
#define _h_sra_sort_csra_tbl_
#ifndef _h_sra_sort_tbl_pair_
#include "tbl-pair.h"
#endif
/*--------------------------------------------------------------------------
* forwards
*/
struct cSRAPair;
struct RowSetIterator;
/*--------------------------------------------------------------------------
* cSRATblPair
* interface to pairing of source and destination tables
*/
typedef struct cSRATblPair cSRATblPair;
struct cSRATblPair
{
TablePair dad;
/* database */
struct cSRAPair *csra;
/* special rowset iterator */
struct RowSetIterator *rsi;
/* if an alignment table, which one? */
uint32_t align_idx;
};
/* MakeRef
* special cased for REFERENCE table
*/
TablePair *cSRATblPairMakeRef ( struct DbPair *self, const ctx_t *ctx,
struct VTable const *src, struct VTable *dst, const char *name, bool reorder );
/* MakeAlign
* special cased for *_ALIGNMENT tables
*/
TablePair *cSRATblPairMakeAlign ( struct DbPair *self, const ctx_t *ctx,
struct VTable const *src, struct VTable *dst, const char *name, bool reorder );
/* MakeSeq
* special cased for SEQUENCE table
*/
TablePair *cSRATblPairMakeSeq ( struct DbPair *self, const ctx_t *ctx,
struct VTable const *src, struct VTable *dst, const char *name, bool reorder );
#endif /* _h_sra_sort_csra_tbl_ */
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