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/*===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/
/**
* Unit tests for mapping between fragment Id and fragment name
*/
#include <ktst/unit_test.hpp>
#include "../../tools/loaders/fastq-loader/id2name.h"
using namespace std;
TEST_SUITE(Id2NameSuite);
TEST_CASE(Init_NullSelf)
{
REQUIRE_RC_FAIL ( Id2Name_Init ( NULL ) );
}
TEST_CASE(Whack_NullSelf)
{
REQUIRE_RC_FAIL ( Id2Name_Whack ( NULL ) );
}
TEST_CASE(Init_Whack)
{
Id2name self;
REQUIRE_RC ( Id2Name_Init ( & self ) );
REQUIRE_RC ( Id2Name_Whack ( & self ) );
}
class Id2name_Fixture
{
public:
Id2name_Fixture()
{
Id2Name_Init ( & m_self );
}
~Id2name_Fixture()
{
Id2Name_Whack ( & m_self );
}
Id2name m_self;
const char * m_res;
};
FIXTURE_TEST_CASE ( Add_NullSelf, Id2name_Fixture )
{
REQUIRE_RC_FAIL ( Id2Name_Add( NULL, 1, "name" ) );
}
FIXTURE_TEST_CASE ( Add_NullName, Id2name_Fixture )
{
REQUIRE_RC_FAIL ( Id2Name_Add( & m_self, 1, NULL ) );
}
FIXTURE_TEST_CASE ( Get_NullSelf, Id2name_Fixture )
{
REQUIRE_RC_FAIL ( Id2Name_Get ( NULL, 1, & m_res ) );
}
FIXTURE_TEST_CASE ( Get_NullRes, Id2name_Fixture )
{
REQUIRE_RC_FAIL ( Id2Name_Get ( & m_self, 1, NULL ) );
}
FIXTURE_TEST_CASE ( Get_Empty, Id2name_Fixture )
{
REQUIRE_RC_FAIL ( Id2Name_Get ( & m_self, 1, & m_res ) );
}
FIXTURE_TEST_CASE ( Get_Found, Id2name_Fixture )
{
REQUIRE_RC ( Id2Name_Add( & m_self, 1, "name" ) );
REQUIRE_RC ( Id2Name_Get ( & m_self, 1, & m_res ) );
REQUIRE_EQ ( string ( "name" ), string ( m_res ) );
}
FIXTURE_TEST_CASE ( Get_NotFound, Id2name_Fixture )
{
REQUIRE_RC ( Id2Name_Add( & m_self, 1, "name" ) );
REQUIRE_RC_FAIL ( Id2Name_Get ( & m_self, 2, & m_res ) );
}
FIXTURE_TEST_CASE ( AddMultiple_Get, Id2name_Fixture )
{
REQUIRE_RC ( Id2Name_Add( & m_self, 1, "name1" ) );
REQUIRE_RC ( Id2Name_Add( & m_self, 2, "name2" ) );
REQUIRE_RC ( Id2Name_Add( & m_self, 3, "name3" ) );
REQUIRE_RC ( Id2Name_Add( & m_self, 4, "name4" ) );
REQUIRE_RC ( Id2Name_Add( & m_self, 5, "name5" ) );
REQUIRE_RC ( Id2Name_Add( & m_self, 6, "name6" ) );
REQUIRE_RC ( Id2Name_Get ( & m_self, 1, & m_res ) );
REQUIRE_EQ ( string ( "name1" ), string ( m_res ) );
REQUIRE_RC ( Id2Name_Get ( & m_self, 4, & m_res ) );
REQUIRE_EQ ( string ( "name4" ), string ( m_res ) );
REQUIRE_RC ( Id2Name_Get ( & m_self, 6, & m_res ) );
REQUIRE_EQ ( string ( "name6" ), string ( m_res ) );
REQUIRE_RC_FAIL ( Id2Name_Get ( & m_self, 0, & m_res ) );
REQUIRE_RC_FAIL ( Id2Name_Get ( & m_self, 7, & m_res ) );
REQUIRE_RC_FAIL ( Id2Name_Get ( & m_self, 123456, & m_res ) );
}
FIXTURE_TEST_CASE ( AddRealloc, Id2name_Fixture )
{ // exceed the original chunk of 1024*1024 bytes
string str ( 1024 * 1024 + 1, '.');
REQUIRE_RC ( Id2Name_Add( & m_self, 1, str.c_str() ) );
REQUIRE_RC ( Id2Name_Get ( & m_self, 1, & m_res ) );
REQUIRE_EQ ( str, string ( m_res ) );
}
/*
FIXTURE_TEST_CASE ( MiltipleBuffers, Id2name_Fixture )
{ // exceed a single KDataBuffer's size limit of 2**32-1 bytes
string str1 ( 0x7fffffff, '1');
REQUIRE_RC ( Id2Name_Add( & m_self, 1, str1.c_str() ) );
string str2 ( 0x7fffffff, '2');
REQUIRE_RC ( Id2Name_Add( & m_self, 2, str2.c_str() ) );
REQUIRE_RC ( Id2Name_Get ( & m_self, 1, & m_res ) );
REQUIRE_EQ ( str1, string ( m_res ) );
REQUIRE_RC ( Id2Name_Get ( & m_self, 2, & m_res ) );
REQUIRE_EQ ( str2, string ( m_res ) );
}
FIXTURE_TEST_CASE ( NameTooLong, Id2name_Fixture )
{ // reject names exceeding KDataBuffer's size limit of 2**32-1 bytes
string str;
try
{
str = string ( 0x800000000, '1');
}
catch(const std::bad_alloc& e)
{ // this machine does not have enough memory
return;
}
REQUIRE_RC_FAIL ( Id2Name_Add( & m_self, 1, str.c_str() ) );
}
*/
//////////////////////////////////////////// Main
extern "C"
{
#include <kapp/args.h>
#include <kfg/config.h>
ver_t CC KAppVersion ( void )
{
return 0x1000000;
}
rc_t CC UsageSummary (const char * progname)
{
return 0;
}
rc_t CC Usage ( const Args * args )
{
return 0;
}
const char UsageDefaultName[] = "wb-test-fastq";
rc_t CC KMain ( int argc, char *argv [] )
{
KConfigDisableUserSettings();
rc_t rc=Id2NameSuite(argc, argv);
return rc;
}
}
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