1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
|
/*===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/
#ifndef BAM_LOAD_ANALYSIS_H_
#define BAM_LOAD_ANALYSIS_H_ 1
#include <klib/rc.h>
typedef struct s_analysis_line {
const char *name;
const char *refID;
const char *bamFile;
const char *asoFile;
uint64_t startPos;
} AnalysisLine;
typedef struct s_analysis {
unsigned N;
AnalysisLine line[1];
} Analysis;
const char *AnalysisNextBAMFile(const char *last);
AnalysisLine *AnalysisMatch(const char *bamFile, const char *name);
rc_t LoadAnalysis(const char *fileName);
#endif
|
