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# ===========================================================================
#
# PUBLIC DOMAIN NOTICE
# National Center for Biotechnology Information
#
# This software/database is a "United States Government Work" under the
# terms of the United States Copyright Act. It was written as part of
# the author's official duties as a United States Government employee and
# thus cannot be copyrighted. This software/database is freely available
# to the public for use. The National Library of Medicine and the U.S.
# Government have not placed any restriction on its use or reproduction.
#
# Although all reasonable efforts have been taken to ensure the accuracy
# and reliability of the software and data, the NLM and the U.S.
# Government do not and cannot warrant the performance or results that
# may be obtained by using this software or data. The NLM and the U.S.
# Government disclaim all warranties, express or implied, including
# warranties of performance, merchantability or fitness for any particular
# purpose.
#
# Please cite the author in any work or product based on this material.
#
# ===========================================================================
cmake_minimum_required (VERSION 3.16)
if (WIN32)
cmake_minimum_required (VERSION 3.20)
set (CMAKE_SYSTEM_VERSION 10.0 CACHE STRING INTERNAL FORCE)
endif()
# set( CMAKE_DISABLE_SOURCE_CHANGES ON ) # Cannot use with bison
# set( CMAKE_DISABLE_IN_SOURCE_BUILD ON )
option(TOOLS_ONLY "Generate targets for tools only (else tools and tests)" ON)
option(BUILD_TOOLS_LOADERS "Generate targets for loader tools")
option(BUILD_TOOLS_INTERNAL "Generate targets for internal tools")
option(BUILD_TOOLS_TEST_TOOLS "Generate targets for test tools")
option(RUN_SANITIZER_TESTS "Run ASAN and TSAN tests" OFF)
option(NO_JAVA "Do not generate any targets that need Java" OFF)
message(CMAKE_VERSION = ${CMAKE_VERSION})
#set( CMAKE_VERBOSE_MAKEFILE ON )
# best to use at the top
project ( sra-tools )
if( PROJECT_SOURCE_DIR STREQUAL PROJECT_BINARY_DIR )
message(FATAL_ERROR "In-source builds are not allowed")
endif()
# this has to follow the project() command!
set(CMAKE_MODULE_PATH
${CMAKE_MODULE_PATH}
"${CMAKE_CURRENT_SOURCE_DIR}/build"
)
set( VDB_BINDIR "/usr/include/ncbi-vdb" CACHE PATH "Location of NCBI VDB build directory" )
set( VDB_INCDIR "/usr/include/ncbi-vdb/interfaces" CACHE PATH "Location of NCBI VDB include directory" )
include(CTest)
enable_testing()
include( build/env.cmake NO_POLICY_SCOPE )
add_subdirectory( shared )
add_subdirectory( ngs )
add_subdirectory( libs )
add_subdirectory( tools )
if ( NOT TOOLS_ONLY )
add_subdirectory( test )
endif()
set ( CPACK_PACKAGE_NAME sra-tools )
set ( CPACK_PACKAGE_VERSION 0.1 )
set ( CPACK_PACKAGE_CONTACT "sra-tools@ncbi.nlm.nih.gov" )
set ( CPACK_PACKAGE_DESCRIPTION_SUMMARY "tax payers funded SRA toolkit for scientists" )
set ( CPACK_DEBIAN_PACKAGE_ARCHITECTURE amd64 )
include ( CPack )
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