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|
# ===========================================================================
#
# PUBLIC DOMAIN NOTICE
# National Center for Biotechnology Information
#
# This software/database is a "United States Government Work" under the
# terms of the United States Copyright Act. It was written as part of
# the author's official duties as a United States Government employee and
# thus cannot be copyrighted. This software/database is freely available
# to the public for use. The National Library of Medicine and the U.S.
# Government have not placed any restriction on its use or reproduction.
#
# Although all reasonable efforts have been taken to ensure the accuracy
# and reliability of the software and data, the NLM and the U.S.
# Government do not and cannot warrant the performance or results that
# may be obtained by using this software or data. The NLM and the U.S.
# Government disclaim all warranties, express or implied, including
# warranties of performance, merchantability or fitness for any particular
# purpose.
#
# Please cite the author in any work or product based on this material.
#
# ===========================================================================
#
# Calculation of the global settings for the CMake build.
#
# allow implicit source file extensions
if ( ${CMAKE_VERSION} VERSION_EQUAL "3.20" OR
${CMAKE_VERSION} VERSION_GREATER "3.20")
cmake_policy(SET CMP0115 OLD)
endif()
# ===========================================================================
# set of build targets
# external tools are always included
set(BUILD_TOOLS_INTERNAL "OFF" CACHE STRING "If set to ON, build internal tools")
set(BUILD_TOOLS_LOADERS "OFF" CACHE STRING "If set to ON, build loaders")
set(BUILD_TOOLS_TEST_TOOLS "OFF" CACHE STRING "If set to ON, build test tools")
set(TOOLS_ONLY "OFF" CACHE STRING "If set to ON, generate tools targets only")
option( RUN_SANITIZER_TESTS "Run ASAN and TSAN tests" OFF )
message( "BUILD_TOOLS_INTERNAL=${BUILD_TOOLS_INTERNAL}" )
message( "BUILD_TOOLS_LOADERS=${BUILD_TOOLS_LOADERS}" )
message( "BUILD_TOOLS_TEST_TOOLS=${BUILD_TOOLS_TEST_TOOLS}" )
message( "TOOLS_ONLY=${TOOLS_ONLY}" )
# ===========================================================================
set( VERSION_FILE "${CMAKE_CURRENT_SOURCE_DIR}/shared/toolkit.vers")
file( READ ${VERSION_FILE} VERSION )
string( STRIP ${VERSION} VERSION )
message( VERSION=${VERSION} )
string( REGEX MATCH "^[0-9]+" MAJVERS ${VERSION} )
set(CMAKE_C_STANDARD 11)
set(CMAKE_C_STANDARD_REQUIRED ON)
set(CMAKE_C_EXTENSIONS OFF)
set(CMAKE_CXX_STANDARD 17)
set(CMAKE_CXX_STANDARD_REQUIRED ON)
set(CMAKE_CXX_EXTENSIONS OFF)
# determine OS
if ( ${CMAKE_HOST_SYSTEM_NAME} STREQUAL "Darwin" )
set(OS "mac")
set(LIBPFX "lib")
set(SHLX "dylib")
set(STLX "a")
elseif ( ${CMAKE_HOST_SYSTEM_NAME} STREQUAL "FreeBSD" )
set(OS "bsd")
set(LIBPFX "lib")
set(SHLX "so")
set(STLX "a")
elseif ( ${CMAKE_HOST_SYSTEM_NAME} STREQUAL "Linux" )
set(OS "linux")
set(LIBPFX "lib")
set(SHLX "so")
set(STLX "a")
elseif ( ${CMAKE_HOST_SYSTEM_NAME} STREQUAL "NetBSD" )
set(OS "bsd")
set(LIBPFX "lib")
set(SHLX "so")
set(STLX "a")
elseif ( ${CMAKE_HOST_SYSTEM_NAME} STREQUAL "Windows" )
set(OS "windows")
set(LIBPFX "")
set(STLX "lib")
else()
message ( FATAL_ERROR "unknown OS " ${CMAKE_HOST_SYSTEM_NAME})
endif()
# determine architecture
if ( ${CMAKE_HOST_SYSTEM_PROCESSOR} STREQUAL "armv7l")
set(ARCH "armv7l")
elseif ( ${CMAKE_HOST_SYSTEM_PROCESSOR} STREQUAL "arm64")
set(ARCH "arm64")
elseif ( ${CMAKE_HOST_SYSTEM_PROCESSOR} STREQUAL "aarch64")
set(ARCH "arm64")
elseif ( ${CMAKE_HOST_SYSTEM_PROCESSOR} STREQUAL "x86_64")
set(ARCH "x86_64")
elseif ( ${CMAKE_HOST_SYSTEM_PROCESSOR} STREQUAL "amd64")
set(ARCH "x86_64")
elseif ( ${CMAKE_HOST_SYSTEM_PROCESSOR} STREQUAL "AMD64")
set(ARCH "x86_64")
else()
message ( FATAL_ERROR "unknown architecture " ${CMAKE_HOST_SYSTEM_PROCESSOR})
endif ()
if( "arm64" STREQUAL "${ARCH}" )
# for bitmagic SIMD
add_compile_definitions(BMNEONOPT)
add_compile_definitions(__arm64__)
endif()
# create variables based entirely upon OS
if ( "bsd" STREQUAL ${OS} )
add_compile_definitions( BSD UNIX )
set( LMCHECK "" )
set( EXE "" )
elseif ( "mac" STREQUAL ${OS} )
add_compile_definitions( MAC BSD UNIX )
set( LMCHECK "" )
set( EXE "" )
elseif( "linux" STREQUAL ${OS} )
add_compile_definitions( LINUX UNIX )
set( LMCHECK -lmcheck )
set( EXE "" )
elseif( "windows" STREQUAL ${OS} )
add_compile_definitions( WINDOWS _WIN32_WINNT=0x0600 )
set( LMCHECK "" )
set( EXE ".exe" )
endif()
# create variables based entirely upon ARCH
# TODO: check if we need anything besides BITS in the if-else below
if ("armv7l" STREQUAL ${ARCH})
set( BITS 32 )
add_compile_options( -Wno-psabi )
elseif ("aarch64" STREQUAL ${ARCH} OR "arm64" STREQUAL ${ARCH})
set ( BITS 64 )
elseif ("x86_64" STREQUAL ${ARCH} )
set ( BITS 64 )
endif()
# now any unique combinations of OS and ARCH
# TODO: check if this is needed
if ( "mac-x86_84" STREQUAL ${OS}-${ARCH})
elseif ( "linux-x86_64" STREQUAL ${OS}-${ARCH})
elseif ( "linux-armv7l" STREQUAL ${OS}-${ARCH})
elseif ( "linux-arm64" STREQUAL ${OS}-${ARCH})
add_compile_definitions( __float128=_Float128 )
endif()
# combinations of OS and COMP
if ( ${OS}-${CMAKE_CXX_COMPILER_ID} STREQUAL "linux-GNU" )
add_definitions( -rdynamic )
add_compile_definitions( _GNU_SOURCE )
endif()
add_compile_definitions( _ARCH_BITS=${BITS} ${ARCH} ) # TODO ARCH ?
# global compiler warnings settings
if ( "GNU" STREQUAL "${CMAKE_C_COMPILER_ID}")
set( DISABLED_WARNINGS_C "-Wno-unused-function")
set( DISABLED_WARNINGS_CXX )
elseif ( CMAKE_CXX_COMPILER_ID MATCHES "^(Apple)?Clang$" )
set( DISABLED_WARNINGS_C "-Wno-unused-function")
set( DISABLED_WARNINGS_CXX "-Wno-tautological-undefined-compare")
elseif ( "MSVC" STREQUAL "${CMAKE_C_COMPILER_ID}")
#
# Unhelpful warnings, generated in particular by MSVC and Windows SDK header files
#
# Warning C4820: 'XXX': 'N' bytes padding added after data member 'YYY'
# Warning C5045: Compiler will insert Spectre mitigation for memory load if /Qspectre switch specified
# Warning C4668: 'XXX' is not defined as a preprocessor macro, replacing with '0' for '#if/#elif'
# Warning C5105: macro expansion producing 'defined' has undefined behavior
# Warning C4514: 'XXX': unreferenced inline function has been removed
# warning C4623: 'XXX': default constructor was implicitly defined as deleted
# warning C4625: 'XXX': copy constructor was implicitly defined as deleted
# warning C4626: 'XXX': assignment operator was implicitly defined as deleted
# warning C5026: 'XXX': move constructor was implicitly defined as deleted
# warning C5027: 'XXX': move assignment operator was implicitly defined as deleted
# warning C4571: Informational: catch(...) semantics changed since Visual C++ 7.1; structured exceptions (SEH) are no longer caught
# warning C4774: '_scprintf' : format string expected in argument 1 is not a string literal
# warning C4255: 'XXX': no function prototype given: converting '()' to '(void)'
# warning C4710: 'XXX': function not inlined
# warning C5031: #pragma warning(pop): likely mismatch, popping warning state pushed in different file
# warning C5032: detected #pragma warning(push) with no corresponding #pragma warning(pop)
set( DISABLED_WARNINGS_C "/wd4820 /wd5045 /wd4668 /wd5105 /wd4514 /wd4774 /wd4255 /wd4710 /wd5031 /wd5032")
set( DISABLED_WARNINGS_CXX "/wd4623 /wd4625 /wd4626 /wd5026 /wd5027 /wd4571")
add_compile_options(/W4)
else()
add_compile_options(-Wall)
endif()
set( CMAKE_C_FLAGS "-Wall ${CMAKE_C_FLAGS} ${DISABLED_WARNINGS_C}" )
set( CMAKE_CXX_FLAGS "-Wall ${CMAKE_CXX_FLAGS} ${DISABLED_WARNINGS_C} ${DISABLED_WARNINGS_CXX}" )
# assume debug build by default
if ( "${CMAKE_BUILD_TYPE}" STREQUAL "" )
set ( CMAKE_BUILD_TYPE "Debug" CACHE STRING "" FORCE )
endif()
if ( ${CMAKE_BUILD_TYPE} STREQUAL "Debug" )
add_compile_definitions( DEBUG _DEBUGGING )
else()
add_compile_definitions( NDEBUG )
endif()
if ( SINGLE_TARGET )
message("CMAKE_BUILD_TYPE=${CMAKE_BUILD_TYPE}")
endif()
set(COMPILER_OPTION_SSE42_SUPPORTED OFF)
if( "x86_64" STREQUAL ${ARCH} )
include(CheckCXXCompilerFlag)
CHECK_CXX_COMPILER_FLAG("-msse4.2" COMPILER_OPTION_SSE42_SUPPORTED)
endif()
# if (COMPILER_OPTION_SSE42_SUPPORTED)
# message("compiler accepts sse4.2 flag")
# else()
# message("compiler does not accept sse4.2 flag")
# endif()
#message( "OS=" ${OS} " ARCH=" ${ARCH} " CXX=" ${CMAKE_CXX_COMPILER} " LMCHECK=" ${LMCHECK} " BITS=" ${BITS} " CMAKE_C_COMPILER_ID=" ${CMAKE_C_COMPILER_ID} " CMAKE_CXX_COMPILER_ID=" ${CMAKE_CXX_COMPILER_ID} )
# ===========================================================================
# 3d party packages
# Flex/Bison
find_package( FLEX 2.6 )
find_package( BISON 3 )
if (XML2_LIBDIR)
find_library( LIBXML2_LIBRARIES libxml2.a HINTS ${XML2_LIBDIR} )
if ( LIBXML2_LIBRARIES )
set( LibXml2_FOUND true )
if ( XML2_INCDIR )
set( LIBXML2_INCLUDE_DIR ${XML2_INCDIR} )
endif()
endif()
else()
find_package( LibXml2 )
endif()
if( LibXml2_FOUND )
message( LIBXML2_INCLUDE_DIR=${LIBXML2_INCLUDE_DIR} )
message( LIBXML2_LIBRARIES=${LIBXML2_LIBRARIES} )
endif()
if(NO_JAVA)
else()
find_package(Java COMPONENTS Development)
if( Java_FOUND AND NOT Java_VERSION )
message(STATUS "No version of Java found")
unset( Java_FOUND )
endif()
endif()
if ( PYTHON_PATH )
set( Python3_EXECUTABLE ${PYTHON_PATH} )
endif()
find_package( Python3 COMPONENTS Interpreter )
# ===========================================================================
# testing
enable_testing()
option(COVERAGE "Generate test coverage" OFF)
if( COVERAGE AND "GNU" STREQUAL "${CMAKE_C_COMPILER_ID}")
message( COVERAGE=${COVERAGE} )
SET(GCC_COVERAGE_COMPILE_FLAGS "-coverage -fprofile-arcs -ftest-coverage")
SET(GCC_COVERAGE_LINK_FLAGS "-coverage -lgcov")
SET( CMAKE_C_FLAGS "${CMAKE_C_FLAGS} ${GCC_COVERAGE_COMPILE_FLAGS}" )
SET( CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${GCC_COVERAGE_COMPILE_FLAGS}" )
SET( CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${GCC_COVERAGE_LINK_FLAGS}" )
endif()
# ===========================================================================
# singfle vs. multitarget generators, ncbi-vdb binaries
function(SetAndCreate var path )
if( NOT DEFINED ${var} )
set( ${var} ${path} PARENT_SCOPE )
endif()
file(MAKE_DIRECTORY ${path} )
endfunction()
if( NOT TARGDIR )
set( TARGDIR ${CMAKE_BINARY_DIR} )
endif()
# VDB-4651 - relying on ./configure's logic for determining interfaces location
set( VDB_INTERFACES_DIR "${VDB_INCDIR}" )
if ( NOT VDB_INTERFACES_DIR OR NOT EXISTS ${VDB_INTERFACES_DIR} )
message(FATAL_ERROR "VDB_INCDIR=\"${VDB_INTERFACES_DIR}\" does not exist - ncbi-vdb was not installed in that location. VDB_INCDIR variable pointing to the ncbi-vdb headers (interfaces) must be specified.")
else()
message("Using ncbi-vdb interfaces: ${VDB_INTERFACES_DIR}")
endif()
if ( ${CMAKE_GENERATOR} MATCHES "Visual Studio.*" OR
${CMAKE_GENERATOR} STREQUAL "Xcode" )
set( SINGLE_CONFIG false )
if (VDB_BINDIR)
message( "Using ncbi-vdb build in ${VDB_BINDIR}.")
endif ()
if( NOT VDB_BINDIR OR NOT EXISTS ${VDB_BINDIR} )
message( FATAL_ERROR "Please specify the location of an ncbi-vdb build in Cmake variable VDB_BINDIR. It is expected to contain one or both subdirectories Debug/ and Release/, with bin/, lib/ and ilib/ underneath each.")
endif()
set( NCBI_VDB_BINDIR_DEBUG ${VDB_BINDIR}/Debug/bin )
set( NCBI_VDB_BINDIR_RELEASE ${VDB_BINDIR}/Release/bin )
set( NCBI_VDB_LIBDIR_DEBUG ${VDB_BINDIR}/Debug/lib )
set( NCBI_VDB_LIBDIR_RELEASE ${VDB_BINDIR}/Release/lib )
set( NCBI_VDB_ILIBDIR_DEBUG ${VDB_BINDIR}/Debug/ilib )
set( NCBI_VDB_ILIBDIR_RELEASE ${VDB_BINDIR}/Release/ilib )
SetAndCreate( CMAKE_RUNTIME_OUTPUT_DIRECTORY_DEBUG ${TARGDIR}/Debug/bin )
SetAndCreate( CMAKE_RUNTIME_OUTPUT_DIRECTORY_RELEASE ${TARGDIR}/Release/bin )
SetAndCreate( TEST_RUNTIME_OUTPUT_DIRECTORY_DEBUG ${TARGDIR}/Debug/test-bin )
SetAndCreate( TEST_RUNTIME_OUTPUT_DIRECTORY_RELEASE ${TARGDIR}/Release/test-bin )
SetAndCreate( CMAKE_ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${TARGDIR}/Debug/lib )
SetAndCreate( CMAKE_ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${TARGDIR}/Release/lib )
set( CMAKE_LIBRARY_OUTPUT_DIRECTORY_DEBUG ${CMAKE_ARCHIVE_OUTPUT_DIRECTORY_DEBUG} )
set( CMAKE_LIBRARY_OUTPUT_DIRECTORY_RELEASE ${CMAKE_ARCHIVE_OUTPUT_DIRECTORY_RELEASE} )
set( CMAKE_JAR_OUTPUT_DIRECTORY ${CMAKE_ARCHIVE_OUTPUT_DIRECTORY_DEBUG} ) # both Debug and Release share this
SetAndCreate( TEMPDIR_DEBUG "${TEST_RUNTIME_OUTPUT_DIRECTORY_DEBUG}/tmp" )
SetAndCreate( TEMPDIR_RELEASE "${TEST_RUNTIME_OUTPUT_DIRECTORY_RELEASE}/tmp" )
cmake_path(NATIVE_PATH TEMPDIR_DEBUG NORMALIZE TEMPDIR_DEBUG)
cmake_path(NATIVE_PATH TEMPDIR_RELEASE NORMALIZE TEMPDIR_RELEASE)
# to be used in add-test() as the location of executables, etc.
# NOTE: always use the COMMAND_EXPAND_LISTS option of add_test
set( BINDIR "$<$<CONFIG:Debug>:${CMAKE_RUNTIME_OUTPUT_DIRECTORY_DEBUG}>$<$<CONFIG:Release>:${CMAKE_RUNTIME_OUTPUT_DIRECTORY_RELEASE}>" )
set( LIBDIR "$<$<CONFIG:Debug>:${CMAKE_LIBRARY_OUTPUT_DIRECTORY_DEBUG}>$<$<CONFIG:Release>:${CMAKE_LIBRARY_OUTPUT_DIRECTORY_RELEASE}>" )
set( TESTBINDIR "$<$<CONFIG:Debug>:${TEST_RUNTIME_OUTPUT_DIRECTORY_DEBUG}>$<$<CONFIG:Release>:${TEST_RUNTIME_OUTPUT_DIRECTORY_RELEASE}>" )
set( TESTBINDIR_DEBUG "${TEST_RUNTIME_OUTPUT_DIRECTORY_DEBUG}" )
set( TESTBINDIR_RELEASE "${TEST_RUNTIME_OUTPUT_DIRECTORY_RELEASE}" )
set( TEMPDIR "$<$<CONFIG:Debug>:${TEMPDIR_DEBUG}>$<$<CONFIG:Release>:${TEMPDIR_RELEASE}>" )
link_directories( $<$<CONFIG:Debug>:${NCBI_VDB_LIBDIR_DEBUG}> $<$<CONFIG:Release>:${NCBI_VDB_LIBDIR_RELEASE}> )
link_directories( $<$<CONFIG:Debug>:${NCBI_VDB_ILIBDIR_DEBUG}> $<$<CONFIG:Release>:${NCBI_VDB_ILIBDIR_RELEASE}> )
else() # assume a single-config generator
set( SINGLE_CONFIG true )
if( NOT VDB_LIBDIR OR NOT EXISTS ${VDB_LIBDIR} )
message(FATAL_ERROR "VDB_LIBDIR=\"${VDB_LIBDIR}\" does not exist - ncbi-vdb was not installed in that location. VDB_LIBDIR variable pointing to the ncbi-vdb binary libraries must be specified.")
else()
message("Using ncbi-vdb binary libraries: ${VDB_LIBDIR}")
endif()
set( NCBI_VDB_LIBDIR ${VDB_LIBDIR} )
SetAndCreate( CMAKE_RUNTIME_OUTPUT_DIRECTORY ${TARGDIR}/bin )
SetAndCreate( CMAKE_LIBRARY_OUTPUT_DIRECTORY ${TARGDIR}/lib )
SetAndCreate( CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${TARGDIR}/ilib )
set( CMAKE_JAR_OUTPUT_DIRECTORY ${CMAKE_LIBRARY_OUTPUT_DIRECTORY} )
# to be used in add-test() as the location of executables.
# NOTE: always use the COMMAND_EXPAND_LISTS option of add_test
set( BINDIR "${TARGDIR}/bin" )
set( LIBDIR "${TARGDIR}/lib" )
set( TESTBINDIR "${TARGDIR}/test-bin" )
set( TESTBINDIR_DEBUG "${TESTBINDIR}" )
set( TESTBINDIR_RELEASE "${TESTBINDIR}" )
SetAndCreate( TEMPDIR "${TESTBINDIR}/tmp" )
link_directories( ${NCBI_VDB_LIBDIR} ) # Must point to the installed ncbi-vdb libs
endif()
# ===========================================================================
# ncbi-vdb sources
# Using installed ncbi-vdb directory
if( WIN32 )
# TODO: WIN32 and Mac still work in an assumption that ncbi-vdb sources are checked out alongside with sra-tools
set( USE_INSTALLED_NCBI_VDB 0 )
elseif( SINGLE_CONFIG )
set( USE_INSTALLED_NCBI_VDB 1 )
else() # XCode
# TODO: WIN32 and Mac still work in an assumption that ncbi-vdb sources are checked out alongside with sra-tools
set( USE_INSTALLED_NCBI_VDB 0 )
# Workaround for Xcode's signing phase code-braking behavior
set(CMAKE_XCODE_ATTRIBUTE_OTHER_CODE_SIGN_FLAGS "-o 131072" ) # linker-signed
endif()
include_directories( ${VDB_INTERFACES_DIR} )
if ( "GNU" STREQUAL "${CMAKE_C_COMPILER_ID}")
include_directories(${VDB_INTERFACES_DIR}/cc/gcc)
include_directories(${VDB_INTERFACES_DIR}/cc/gcc/${ARCH})
elseif ( CMAKE_CXX_COMPILER_ID MATCHES "^(Apple)?Clang$" )
include_directories(${VDB_INTERFACES_DIR}/cc/clang)
include_directories(${VDB_INTERFACES_DIR}/cc/clang/${ARCH})
elseif ( "MSVC" STREQUAL "${CMAKE_C_COMPILER_ID}")
include_directories(${VDB_INTERFACES_DIR}/cc/vc++)
include_directories(${VDB_INTERFACES_DIR}/cc/vc++/${ARCH})
endif()
if ( "bsd" STREQUAL ${OS} )
include_directories(${VDB_INTERFACES_DIR}/os/bsd)
include_directories(${VDB_INTERFACES_DIR}/os/unix)
elseif ( "mac" STREQUAL ${OS} )
include_directories(${VDB_INTERFACES_DIR}/os/mac)
include_directories(${VDB_INTERFACES_DIR}/os/unix)
elseif( "linux" STREQUAL ${OS} )
include_directories(${VDB_INTERFACES_DIR}/os/linux)
include_directories(${VDB_INTERFACES_DIR}/os/unix)
elseif( "windows" STREQUAL ${OS} )
include_directories(${VDB_INTERFACES_DIR}/os/win)
endif()
include_directories( ${CMAKE_SOURCE_DIR}/ngs/ngs-sdk )
include_directories( ${CMAKE_SOURCE_DIR}/libs/inc )
# path to schema includes residing in sra-tools
set( SRC_INTERFACES_DIR "${CMAKE_CURRENT_SOURCE_DIR}/libs/schema" )
# ===========================================================================
# DIRTOTEST is the overridable location of the executables to call from scripted test
if( NOT DIRTOTEST )
set( DIRTOTEST ${BINDIR} )
endif()
#message( DIRTOTEST: ${DIRTOTEST})
# CONFIGTOUSE is a way to block user settings ($HOME/.ncbi/user-settings.mkfg). Assign anything but NCBI_SETTINGS to it, and the user settings will be ignored.
if( NOT CONFIGTOUSE )
set( CONFIGTOUSE NCBI_SETTINGS )
endif()
#message( CONFIGTOUSE: ${CONFIGTOUSE})
if( Python3_EXECUTABLE )
set( PythonUserBase ${TEMPDIR}/python )
endif()
#
# Common functions for creation of build artefacts
#
# provide ability to override installation directories
if ( NOT CMAKE_INSTALL_BINDIR )
set( CMAKE_INSTALL_BINDIR ${CMAKE_INSTALL_PREFIX}/bin )
endif()
if ( NOT CMAKE_INSTALL_LIBDIR )
set( CMAKE_INSTALL_LIBDIR ${CMAKE_INSTALL_PREFIX}/lib64 )
endif()
function( ExportStatic name install )
# the output goes to .../lib
if( SINGLE_CONFIG )
# make the output name versioned, create all symlinks
set_target_properties( ${name} PROPERTIES
ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_LIBRARY_OUTPUT_DIRECTORY} )
add_custom_command(TARGET ${name}
POST_BUILD
COMMAND rm -f lib${name}.a.${VERSION}
COMMAND mv lib${name}.a lib${name}.a.${VERSION}
COMMAND ln -f -s lib${name}.a.${VERSION} lib${name}.a.${MAJVERS}
COMMAND ln -f -s lib${name}.a.${MAJVERS} lib${name}.a
COMMAND ln -f -s lib${name}.a lib${name}-static.a
WORKING_DIRECTORY ${CMAKE_LIBRARY_OUTPUT_DIRECTORY}
)
set_property(
TARGET ${name}
APPEND
PROPERTY ADDITIONAL_CLEAN_FILES "${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/lib${name}.a.${VERSION};${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/lib${name}.a.${MAJVERS};${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/lib${name}.a;${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/lib${name}-static.a"
)
if ( ${install} )
install( FILES ${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/lib${name}.a.${VERSION}
${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/lib${name}.a.${MAJVERS}
${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/lib${name}.a
${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/lib${name}-static.a
DESTINATION ${CMAKE_INSTALL_LIBDIR}
)
endif()
else()
set_target_properties( ${name} PROPERTIES
ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CMAKE_LIBRARY_OUTPUT_DIRECTORY_DEBUG})
set_target_properties( ${name} PROPERTIES
ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CMAKE_LIBRARY_OUTPUT_DIRECTORY_RELEASE})
if ( ${install} )
install( TARGETS ${name} DESTINATION ${CMAKE_INSTALL_LIBDIR} )
endif()
endif()
endfunction()
#
# create versioned names and symlinks for a shared library
#
function(MakeLinksShared target name install)
if( SINGLE_CONFIG )
if( ${OS} STREQUAL "mac" )
set( LIBSUFFIX ".${VERSION}.${SHLX}" )
set( MAJLIBSUFFIX ".${MAJVERS}.${SHLX}" )
else()
set( LIBSUFFIX ".${SHLX}.${VERSION}" )
set( MAJLIBSUFFIX ".${SHLX}.${MAJVERS}" )
endif()
set_target_properties(
${target} PROPERTIES VERSION ${VERSION} SOVERSION ${MAJVERS})
#add_custom_command(TARGET ${target}
# POST_BUILD
# COMMAND rm -f lib${name}${LIBSUFFIX}
# COMMAND mv lib${name}.${SHLX} lib${name}${LIBSUFFIX}
# COMMAND ln -f -s lib${name}${LIBSUFFIX} lib${name}${MAJLIBSUFFIX}
# COMMAND ln -f -s lib${name}${MAJLIBSUFFIX} lib${name}.${SHLX}
# WORKING_DIRECTORY ${CMAKE_LIBRARY_OUTPUT_DIRECTORY}
#)
#set_property(
# TARGET ${target}
# APPEND
# PROPERTY ADDITIONAL_CLEAN_FILES "${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/lib${name}${LIBSUFFIX};${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/lib${name}${MAJLIBSUFFIX};${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/lib${name}.${SHLX}"
#)
if ( ${install} )
install( PROGRAMS ${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/lib${name}${LIBSUFFIX}
${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/lib${name}${MAJLIBSUFFIX}
${CMAKE_LIBRARY_OUTPUT_DIRECTORY}/lib${name}.${SHLX}
DESTINATION ${CMAKE_INSTALL_LIBDIR}
)
endif()
else()
set_target_properties( ${target} PROPERTIES
ARCHIVE_OUTPUT_DIRECTORY_DEBUG ${CMAKE_RUNTIME_OUTPUT_DIRECTORY_DEBUG})
set_target_properties( ${target} PROPERTIES
ARCHIVE_OUTPUT_DIRECTORY_RELEASE ${CMAKE_RUNTIME_OUTPUT_DIRECTORY_RELEASE})
if ( ${install} )
install( TARGETS ${target}
ARCHIVE DESTINATION ${CMAKE_INSTALL_BINDIR}
RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}
)
endif()
if (WIN32)
install(FILES $<TARGET_PDB_FILE:${target}> DESTINATION ${CMAKE_INSTALL_BINDIR} OPTIONAL)
endif()
endif()
endfunction()
#
# for a static library target, create a public shared target with the same base name and contents
#
function(ExportShared lib install)
if ( NOT WIN32 )
get_target_property( src ${lib} SOURCES )
add_library( ${lib}-shared SHARED ${src} )
set_target_properties( ${lib}-shared PROPERTIES OUTPUT_NAME ${lib} )
MakeLinksShared( ${lib}-shared ${lib} ${install} )
endif()
endfunction()
include(CheckCXXSourceRuns)
#
# Ensure static linking against C/C++ runtime.
# Create versioned names and symlinks for an executable.
#
# if ( "GNU" STREQUAL "${CMAKE_C_COMPILER_ID}" )
# # check for the presence of static C/C++ runtime libraries
# set(CMAKE_REQUIRED_LINK_OPTIONS -static-libgcc)
# check_cxx_source_runs("int main(int argc, char *argv[]) { return 0; }" HAVE_STATIC_LIBGCC)
# set(CMAKE_REQUIRED_LINK_OPTIONS -static-libstdc++)
# check_cxx_source_runs("int main(int argc, char *argv[]) { return 0; }" HAVE_STATIC_LIBSTDCXX)
# endif()
function(MakeLinksExe target install_via_driver)
if ( "GNU" STREQUAL "${CMAKE_C_COMPILER_ID}" )
if ( HAVE_STATIC_LIBGCC )
target_link_options( ${target} PRIVATE -static-libgcc )
endif()
if ( HAVE_STATIC_LIBSTDCXX )
target_link_options( ${target} PRIVATE -static-libstdc++ )
endif()
endif()
# creates dependency loops
# if ( install_via_driver )
# add_dependencies( ${target} sratools )
# endif()
if( SINGLE_CONFIG )
if ( install_via_driver )
add_custom_command(TARGET ${target}
POST_BUILD
COMMAND rm -f ${target}.${VERSION}
COMMAND mv ${target} ${target}.${VERSION}
COMMAND ln -f -s ${target}.${VERSION} ${target}.${MAJVERS}
COMMAND ln -f -s ${target}.${MAJVERS} ${target}
COMMAND ln -f -s sratools.${VERSION} ${target}-driver
WORKING_DIRECTORY ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}
)
install(
PROGRAMS
${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${target}
${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${target}.${MAJVERS}
DESTINATION ${CMAKE_INSTALL_PREFIX}/bin
)
install(
PROGRAMS ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${target}.${VERSION}
RENAME ${target}-orig.${VERSION}
DESTINATION ${CMAKE_INSTALL_PREFIX}/bin
)
install(
PROGRAMS ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${target}-driver
RENAME ${target}.${VERSION}
DESTINATION ${CMAKE_INSTALL_PREFIX}/bin
)
else()
add_custom_command(TARGET ${target}
POST_BUILD
COMMAND rm -f ${target}.${VERSION}
COMMAND mv ${target} ${target}.${VERSION}
COMMAND ln -f -s ${target}.${VERSION} ${target}.${MAJVERS}
COMMAND ln -f -s ${target}.${MAJVERS} ${target}
WORKING_DIRECTORY ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}
)
install( PROGRAMS ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${target}.${VERSION}
${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${target}.${MAJVERS}
${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${target}
DESTINATION ${CMAKE_INSTALL_PREFIX}/bin
)
endif()
set_property(
TARGET ${target}
APPEND
PROPERTY ADDITIONAL_CLEAN_FILES "${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${target}.${VERSION};${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${target}.${MAJVERS};${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${target};${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${target}-driver"
)
else()
if ( install_via_driver )
# on Windows/XCode, ${target}-orig file names have no version attached
install( PROGRAMS ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/${target}${EXE}
RENAME ${target}-orig${EXE}
DESTINATION ${CMAKE_INSTALL_BINDIR}
)
install( PROGRAMS ${CMAKE_RUNTIME_OUTPUT_DIRECTORY}/sratools${EXE}
RENAME ${target}${EXE}
DESTINATION ${CMAKE_INSTALL_BINDIR}
)
if (WIN32)
# on install, copy/rename the .pdb files if any
install(FILES $<TARGET_PDB_FILE:${target}>
RENAME ${target}-orig.pdb
DESTINATION ${CMAKE_INSTALL_BINDIR} OPTIONAL)
# add the driver-tool's .pdb
install(FILES $<TARGET_PDB_FILE:sratools>
RENAME ${target}.pdb
DESTINATION ${CMAKE_INSTALL_BINDIR} OPTIONAL)
endif()
else()
install( TARGETS ${target} DESTINATION ${CMAKE_INSTALL_BINDIR} )
if (WIN32) # copy the .pdb files if any
install(FILES $<TARGET_PDB_FILE:${target}> DESTINATION ${CMAKE_INSTALL_BINDIR} OPTIONAL)
endif()
endif()
endif()
endfunction()
include(CheckIncludeFileCXX)
unset(HAVE_MBEDTLS_H CACHE) # TODO: remove
unset(HAVE_MBEDTLS_F CACHE) # TODO: remove
check_include_file_cxx(mbedtls/md.h HAVE_MBEDTLS_H)
if ( HAVE_MBEDTLS_H )
set( MBEDTLS_LIBS mbedx509 mbedtls mbedcrypto )
set(CMAKE_REQUIRED_LIBRARIES ${MBEDTLS_LIBS})
include(CheckCXXSourceRuns)
check_cxx_source_runs("
#include <stdio.h>
#include \"mbedtls/md.h\"
#include \"mbedtls/sha256.h\"
int main(int argc, char *argv[]) {
mbedtls_md_context_t ctx;
mbedtls_md_type_t md_type = MBEDTLS_MD_SHA256;
mbedtls_md_init(&ctx);
printf(\"test p: %p\", ctx.md_ctx);
}
" HAVE_MBEDTLS_F)
endif()
if( NOT SINGLE_CONFIG )
set( COMMON_LINK_LIBRARIES kapp tk-version )
set( COMMON_LIBS_READ $<$<CONFIG:Debug>:${NCBI_VDB_LIBDIR_DEBUG}>$<$<CONFIG:Release>:${NCBI_VDB_LIBDIR_RELEASE}>/${LIBPFX}ncbi-vdb.${SHLX} ${MBEDTLS_LIBS} )
set( COMMON_LIBS_WRITE $<$<CONFIG:Debug>:${NCBI_VDB_LIBDIR_DEBUG}>$<$<CONFIG:Release>:${NCBI_VDB_LIBDIR_RELEASE}>/${LIBPFX}ncbi-wvdb.${SHLX} ${MBEDTLS_LIBS} )
else()
# single-config generators need full path to ncbi-vdb libraries in order to handle the dependency correctly
set( COMMON_LINK_LIBRARIES ${NCBI_VDB_LIBDIR}/libkapp.${STLX} tk-version )
set( COMMON_LIBS_READ ${NCBI_VDB_LIBDIR}/libncbi-vdb.${SHLX} pthread dl m ${MBEDTLS_LIBS} )
set( COMMON_LIBS_WRITE ${NCBI_VDB_LIBDIR}/libncbi-wvdb.${SHLX} pthread dl m ${MBEDTLS_LIBS} )
endif()
if( WIN32 )
add_compile_definitions( UNICODE _UNICODE )
set( CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} /ENTRY:wmainCRTStartup" )
set( CMAKE_MSVC_RUNTIME_LIBRARY "MultiThreaded$<$<CONFIG:Debug>:Debug>" )
set( COMMON_LINK_LIBRARIES ${COMMON_LINK_LIBRARIES} Ws2_32 Crypt32 ${MBEDTLS_LIBS} )
endif()
if ( SINGLE_CONFIG )
# standard kfg files
if ( BUILD_TOOLS_INTERNAL )
set( VDB_COPY_DIR ${CMAKE_SOURCE_DIR}/tools/internal/vdb-copy )
endif()
install( SCRIPT CODE
"execute_process( COMMAND /bin/sh -c \
\"${CMAKE_SOURCE_DIR}/build/install.sh \
${VDB_INCDIR}/kfg/ncbi \
'${VDB_COPY_DIR}' \
${CMAKE_INSTALL_PREFIX}/bin/ncbi \
/etc/ncbi \
${CMAKE_INSTALL_BINDIR} \
${CMAKE_INSTALL_LIBDIR} \
${CMAKE_SOURCE_DIR}/shared/kfgsums \
\" )"
)
endif()
if( NOT SINGLE_CONFIG )
if( RUN_SANITIZER_TESTS )
message( "RUN_SANITIZER_TESTS (${RUN_SANITIZER_TESTS}) cannot be turned on in a non single config mode - overriding to OFF" )
endif()
set( RUN_SANITIZER_TESTS OFF )
endif()
if( RUN_SANITIZER_TESTS )
find_program(LSB_RELEASE_EXEC lsb_release)
execute_process(COMMAND ${LSB_RELEASE_EXEC} -is
OUTPUT_VARIABLE LSB_RELEASE_ID_SHORT
OUTPUT_STRIP_TRAILING_WHITESPACE
)
message("LSB_RELEASE_ID_SHORT: ${LSB_RELEASE_ID_SHORT}")
if( LSB_RELEASE_ID_SHORT STREQUAL "Ubuntu" )
message("Disabling sanitizer tests on Ubuntu...")
set( RUN_SANITIZER_TESTS OFF )
endif()
endif()
if( RUN_SANITIZER_TESTS_OVERRIDE )
message("Overriding sanitizer tests due to RUN_SANITIZER_TESTS_OVERRIDE: ${RUN_SANITIZER_TESTS_OVERRIDE}")
set( RUN_SANITIZER_TESTS ON )
endif()
message( "RUN_SANITIZER_TESTS: ${RUN_SANITIZER_TESTS}" )
function( GenerateStaticLibsWithDefs target_name sources compile_defs include_dirs )
add_library( ${target_name} STATIC ${sources} )
if( RUN_SANITIZER_TESTS )
add_library( "${target_name}-asan" STATIC ${sources} )
target_compile_options( "${target_name}-asan" PUBLIC -fsanitize=address )
target_link_options( "${target_name}-asan" PUBLIC -fsanitize=address )
add_library( "${target_name}-tsan" STATIC ${sources} )
target_compile_options( "${target_name}-tsan" PUBLIC -fsanitize=thread )
target_link_options( "${target_name}-tsan" PUBLIC -fsanitize=thread )
endif()
if( NOT "" STREQUAL "${compile_defs}" )
target_compile_definitions( ${target_name} PRIVATE ${compile_defs} )
if( RUN_SANITIZER_TESTS )
target_compile_definitions( "${target_name}-asan" PRIVATE ${compile_defs} )
target_compile_definitions( "${target_name}-tsan" PRIVATE ${compile_defs} )
endif()
endif()
if( NOT "" STREQUAL "${include_dirs}" )
target_include_directories( ${target_name} PUBLIC "${include_dirs}" )
if( RUN_SANITIZER_TESTS )
target_include_directories( "${target_name}-asan" PUBLIC "${include_dirs}" )
target_include_directories( "${target_name}-tsan" PUBLIC "${include_dirs}" )
endif()
endif()
endfunction()
function( GenerateStaticLibs target_name sources )
GenerateStaticLibsWithDefs( ${target_name} "${sources}" "" "" )
endfunction()
function( GenerateExecutableWithDefs target_name sources compile_defs include_dirs link_libs )
add_executable( ${target_name} ${sources} )
# always link as c++
set_target_properties(${target_name} PROPERTIES LINKER_LANGUAGE CXX)
if (RUN_SANITIZER_TESTS)
add_executable( "${target_name}-asan" ${sources} )
set_target_properties("${target_name}-asan" PROPERTIES LINKER_LANGUAGE CXX)
target_compile_options( "${target_name}-asan" PRIVATE -fsanitize=address )
target_link_options( "${target_name}-asan" PRIVATE -fsanitize=address )
add_executable( "${target_name}-tsan" ${sources} )
set_target_properties("${target_name}-tsan" PROPERTIES LINKER_LANGUAGE CXX)
target_compile_options( "${target_name}-tsan" PRIVATE -fsanitize=thread )
target_link_options( "${target_name}-tsan" PRIVATE -fsanitize=thread )
endif()
if( NOT "" STREQUAL "${compile_defs}" )
target_compile_definitions( ${target_name} PRIVATE "${compile_defs}" )
if (RUN_SANITIZER_TESTS)
target_compile_definitions( "${target_name}-asan" PRIVATE "${compile_defs}" )
target_compile_definitions( "${target_name}-tsan" PRIVATE "${compile_defs}" )
endif()
endif()
if( NOT "" STREQUAL "${include_dirs}" )
target_include_directories( ${target_name} PRIVATE "${include_dirs}" )
if (RUN_SANITIZER_TESTS)
target_include_directories( "${target_name}-asan" PRIVATE "${include_dirs}" )
target_include_directories( "${target_name}-tsan" PRIVATE "${include_dirs}" )
endif()
endif()
if( NOT "" STREQUAL "${link_libs}" )
target_link_libraries( ${target_name} "${link_libs}" )
if (RUN_SANITIZER_TESTS)
target_link_libraries( "${target_name}-asan" "${link_libs}" )
target_link_libraries( "${target_name}-tsan" "${link_libs}" )
endif()
endif()
endfunction()
function( AddExecutableTest test_name sources libraries include_dirs )
GenerateExecutableWithDefs( "${test_name}" "${sources}" "" "${include_dirs}" "${libraries}" )
add_test( NAME ${test_name} COMMAND ${test_name} WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )
if( RUN_SANITIZER_TESTS )
add_test( NAME "${test_name}-asan" COMMAND "${test_name}-asan" WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )
add_test( NAME "${test_name}-tsan" COMMAND "${test_name}-tsan" WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR} )
endif()
endfunction()
# use to make sure a test script has the tool(s) it needs built before it executes
macro(ToolsRequired tool) # may provide additional tools
add_custom_target(Build-${tool} ALL )
foreach(loop_var ${ARGV})
add_dependencies(Build-${tool} ${loop_var})
endforeach()
endmacro()
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