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/*===========================================================================
*
* PUBLIC DOMAIN NOTICE
* National Center for Biotechnology Information
*
* This software/database is a "United States Government Work" under the
* terms of the United States Copyright Act. It was written as part of
* the author's official duties as a United States Government employee and
* thus cannot be copyrighted. This software/database is freely available
* to the public for use. The National Library of Medicine and the U.S.
* Government have not placed any restriction on its use or reproduction.
*
* Although all reasonable efforts have been taken to ensure the accuracy
* and reliability of the software and data, the NLM and the U.S.
* Government do not and cannot warrant the performance or results that
* may be obtained by using this software or data. The NLM and the U.S.
* Government disclaim all warranties, express or implied, including
* warranties of performance, merchantability or fitness for any particular
* purpose.
*
* Please cite the author in any work or product based on this material.
*
* ===========================================================================
*
*/
#ifndef _h_sra_sort_db_pair_
#define _h_sra_sort_db_pair_
#ifndef _h_sra_sort_defs_
#include "sort-defs.h"
#endif
#ifndef _h_klib_vector_
#include <klib/vector.h>
#endif
#ifndef _h_klib_refcount_
#include <klib/refcount.h>
#endif
/*--------------------------------------------------------------------------
* forwards
*/
struct KDirectory;
struct VTable;
struct VDatabase;
struct TablePair;
struct MetaPair;
struct DirPair;
/*--------------------------------------------------------------------------
* DbPair
* interface to pairing of source and destination tables
*/
typedef struct DbPair_vt DbPair_vt;
typedef struct DbPair DbPair;
struct DbPair
{
/* polymorphic */
const DbPair_vt *vt;
/* the pair of VDatabases */
struct VDatabase const *sdb;
struct VDatabase *ddb;
/* the set of enclosed DbPairs */
Vector dbs;
/* the set of TablePairs */
Vector tbls;
/* the set of DirPairs */
Vector dirs;
/* the pair of KMetadata */
struct MetaPair *meta;
/* exclusions */
const char **exclude_dbs;
const char **exclude_tbls;
const char **exclude_meta;
/* simple db name */
const char *name;
/* full db spec */
size_t full_spec_size;
const char *full_spec;
/* reference counting */
KRefcount refcount;
uint32_t align;
};
#ifndef DBPAIR_IMPL
#define DBPAIR_IMPL DbPair
#endif
struct DbPair_vt
{
void ( * whack ) ( DBPAIR_IMPL *self, const ctx_t *ctx );
void ( * explode ) ( DBPAIR_IMPL *self, const ctx_t *ctx );
const char* ( * get_tbl_mbr ) ( const DBPAIR_IMPL *self, const ctx_t *ctx,
struct VTable const *src, const char *name );
};
/* Make
* makes an object based upon open source and destination VDatabase objects
*/
DbPair *DbPairMake ( const ctx_t *ctx,
struct VDatabase const *src, struct VDatabase *dst, const char *name );
/* Release
*/
void DbPairRelease ( DbPair *self, const ctx_t *ctx );
/* Duplicate
*/
DbPair *DbPairDuplicate ( DbPair *self, const ctx_t *ctx );
/* Copy
* copy from source to destination
*/
void DbPairCopy ( DbPair *self, const ctx_t *ctx );
/* Run
*/
void DbPairRun ( DbPair *self, const ctx_t *ctx );
/* MakeDbPair
*/
DbPair *DbPairMakeDbPair ( DbPair *self, const ctx_t *ctx, const char *member, const char *name, bool required,
DbPair* ( * make ) ( DbPair *self, const ctx_t *ctx,
struct VDatabase const *src, struct VDatabase *dst, const char *name )
);
DbPair *DbPairMakeStdDbPair ( struct DbPair *self, const ctx_t *ctx,
struct VDatabase const *src, struct VDatabase *dst, const char *name );
/* MakeTablePair
*/
struct TablePair *DbPairMakeTablePair ( DbPair *self, const ctx_t *ctx,
const char *member, const char *name, bool required, bool reorder,
struct TablePair* ( * make ) ( DbPair *self, const ctx_t *ctx,
struct VTable const *src, struct VTable *dst, const char *name, bool reorder )
);
/* GetTblMember
* v1 schema does not preserve member name with an object
* some schemas confuse types with the same name
*/
#define DbPairGetTblMember( self, ctx, src, name ) \
POLY_DISPATCH_PTR ( get_tbl_mbr, self, const DBPAIR_IMPL, ctx, src, name )
/* AddDbPair
* called from implementations
*/
void DbPairAddDbPair ( DbPair *self, const ctx_t *ctx, DbPair *db );
/* AddTablePair
* called from implementations
*/
void DbPairAddTablePair ( DbPair *self, const ctx_t *ctx, struct TablePair *tbl );
/* MakeDirPair
*/
struct DirPair *DbPairMakeDirPair ( DbPair *self, const ctx_t *ctx, const char *name, bool required,
struct DirPair* ( * make ) ( DbPair *self, const ctx_t *ctx,
struct KDirectory const *src, struct KDirectory *dst, const char *name )
);
/* AddDirPair
* called from implementations
*/
void DbPairAddDirPair ( DbPair *self, const ctx_t *ctx, struct DirPair *dir );
/* Init
* initialize superclass with vt
* also db pair and name
* plus optional full-spec
*/
void DbPairInit ( DbPair *self, const ctx_t *ctx, const DbPair_vt *vt,
struct VDatabase const *src, struct VDatabase *dst,
const char *name, const char *opt_full_spec );
/* Destroy
* destroys superclass items
*/
void DbPairDestroy ( DbPair *self, const ctx_t *ctx );
#endif /* _h_sra_sort_db_pair_ */
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