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Author: Andreas Tille <tille@debian.org>
Aaron M. Ucko <ucko@debian.org>
Last-Update: 2023-01-15 20:56:15 -0500
Description: Find ncbi vdb at Debian location
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -54,8 +54,8 @@ set(CMAKE_MODULE_PATH
"${CMAKE_CURRENT_SOURCE_DIR}/build"
)
-set( VDB_BINDIR "${CMAKE_BINARY_DIR}/../ncbi-vdb" CACHE PATH "Location of NCBI VDB build directory" )
-set( VDB_INCDIR "${CMAKE_SOURCE_DIR}/../ncbi-vdb/interfaces" CACHE PATH "Location of NCBI VDB include directory" )
+set( VDB_BINDIR "/usr/include/ncbi-vdb" CACHE PATH "Location of NCBI VDB build directory" )
+set( VDB_INCDIR "/usr/include/ncbi-vdb/interfaces" CACHE PATH "Location of NCBI VDB include directory" )
include(CTest)
enable_testing()
--- a/tools/loaders/bam-loader/CMakeLists.txt
+++ b/tools/loaders/bam-loader/CMakeLists.txt
@@ -27,7 +27,7 @@ if( NOT WIN32)
add_compile_definitions( __mod__="tools/bam-loader" )
- include_directories( ${VDB_INTERFACES_DIR}/ext/ ) # zlib.h
+ include_directories( /usr/include/ncbi-vdb/interfaces/ext/ ) # zlib.h
include_directories(./)
set( SRC
--- a/tools2/shared/cmake/Findncbi-vdb.cmake
+++ b/tools2/shared/cmake/Findncbi-vdb.cmake
@@ -44,7 +44,8 @@ elseif (NOT ncbi-vdb_FIND_QUIETLY)
endif ()
find_path (ncbi-vdb_INCLUDE_DIR "vdb/manager.h"
- PATHS "../ncbi-vdb/interfaces"
+ PATHS "/usr/include/ncbi-vdb/interfaces"
+ "../ncbi-vdb/interfaces"
"../../ncbi-vdb/interfaces"
"../../../ncbi-vdb/interfaces"
"../../../../ncbi-vdb/interfaces"
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